EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOCUG00000023913 (Gene tree)
Gene ID: 100340649
Gene Symbol: -
Alias: -
Full Name: DNA dC->dU-editing enzyme APOBEC-3H
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 11123 bases
Position: chr4:84316206-84327328
Accession: 100340649
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000020104	APOBEC_N	PF08210.11	4.1e-65	1	2
ENSOCUP00000020104	APOBEC_N	PF08210.11	4.1e-65	2	2
ENSOCUP00000020104	APOBEC_C	PF05240.14	6.2e-59	1	2
ENSOCUP00000020104	APOBEC_C	PF05240.14	6.2e-59	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000028369	-	2050	XM_008257024	ENSOCUP00000020104	367 (aa)	XP_008255246	G1TST5

Gene Model

Click here to download ENSOCUG00000023913's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000023913's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOCUG00000023913	-	88	39.011	ENSOCUG00000023739	AICDA	95	39.011
ENSOCUG00000023913	-	76	34.946	ENSOCUG00000028008	APOBEC2	79	33.871
ENSOCUG00000023913	-	82	39.375	ENSOCUG00000023532	-	63	39.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000023913	-	81	40.223	ENSG00000100298	APOBEC3H	98	40.223	Homo_sapiens
ENSOCUG00000023913	-	93	34.813	ENSAMEG00000010818	-	97	34.813	Ailuropoda_melanoleuca
ENSOCUG00000023913	-	84	40.957	ENSANAG00000025410	APOBEC3H	84	40.957	Aotus_nancymaae
ENSOCUG00000023913	-	95	41.111	ENSBTAG00000007755	APOBEC3H	97	41.755	Bos_taurus
ENSOCUG00000023913	-	83	42.135	ENSCJAG00000012524	APOBEC3H	91	41.429	Callithrix_jacchus
ENSOCUG00000023913	-	89	41.143	ENSCAFG00000001361	APOBEC3Z3	94	41.143	Canis_familiaris
ENSOCUG00000023913	-	87	39.773	ENSCAFG00020002584	-	91	39.773	Canis_lupus_dingo
ENSOCUG00000023913	-	96	42.308	ENSCHIG00000026580	-	97	43.989	Capra_hircus
ENSOCUG00000023913	-	88	39.444	ENSTSYG00000032894	-	100	41.618	Carlito_syrichta
ENSOCUG00000023913	-	93	47.397	ENSCPOG00000009257	-	87	49.718	Cavia_porcellus
ENSOCUG00000023913	-	78	42.308	ENSCCAG00000008525	APOBEC3H	91	41.958	Cebus_capucinus
ENSOCUG00000023913	-	87	44.382	ENSCATG00000030302	APOBEC3H	99	44.382	Cercocebus_atys
ENSOCUG00000023913	-	90	44.262	ENSCLAG00000016615	-	96	44.262	Chinchilla_lanigera
ENSOCUG00000023913	-	89	42.021	ENSCSAG00000006371	APOBEC3H	89	42.021	Chlorocebus_sabaeus
ENSOCUG00000023913	-	100	43.812	ENSCGRG00001022976	Apobec3	97	43.812	Cricetulus_griseus_chok1gshd
ENSOCUG00000023913	-	100	43.812	ENSCGRG00000005621	Apobec3	97	43.812	Cricetulus_griseus_crigri
ENSOCUG00000023913	-	99	44.584	ENSDORG00000027271	-	100	58.163	Dipodomys_ordii
ENSOCUG00000023913	-	98	42.458	ENSECAG00000007726	APOBEC3H	90	42.045	Equus_caballus
ENSOCUG00000023913	-	87	42.308	ENSFCAG00000005251	APOBEC3Z3	93	42.308	Felis_catus
ENSOCUG00000023913	-	83	40.223	ENSSTOG00000007125	-	87	40.223	Ictidomys_tridecemlineatus
ENSOCUG00000023913	-	94	44.476	ENSJJAG00000016840	-	90	44.476	Jaculus_jaculus
ENSOCUG00000023913	-	89	42.541	ENSLAFG00000027404	-	96	42.541	Loxodonta_africana
ENSOCUG00000023913	-	88	44.134	ENSMFAG00000031827	APOBEC3H	93	44.134	Macaca_fascicularis
ENSOCUG00000023913	-	88	43.575	ENSMMUG00000001016	APOBEC3H	93	43.575	Macaca_mulatta
ENSOCUG00000023913	-	88	43.575	ENSMNEG00000039259	APOBEC3H	93	43.575	Macaca_nemestrina
ENSOCUG00000023913	-	89	43.617	ENSMLEG00000033417	APOBEC3H	92	43.972	Mandrillus_leucophaeus
ENSOCUG00000023913	-	100	42.716	ENSMAUG00000011683	Apobec3	99	42.607	Mesocricetus_auratus
ENSOCUG00000023913	-	100	40.482	ENSMOCG00000021576	Apobec3	99	40.686	Microtus_ochrogaster
ENSOCUG00000023913	-	100	41.832	MGP_CAROLIEiJ_G0020029	Apobec3	98	55.422	Mus_caroli
ENSOCUG00000023913	-	100	41.191	ENSMUSG00000009585	Apobec3	98	54.217	Mus_musculus
ENSOCUG00000023913	-	100	42.365	MGP_PahariEiJ_G0020031	-	99	41.832	Mus_pahari
ENSOCUG00000023913	-	100	40.943	MGP_SPRETEiJ_G0020927	Apobec3	98	55.422	Mus_spretus
ENSOCUG00000023913	-	92	42.049	ENSMPUG00000013239	-	98	42.049	Mustela_putorius_furo
ENSOCUG00000023913	-	100	44.712	ENSNGAG00000018998	Apobec3	95	49.291	Nannospalax_galili
ENSOCUG00000023913	-	89	39.362	ENSNLEG00000015218	-	89	39.362	Nomascus_leucogenys
ENSOCUG00000023913	-	91	44.505	ENSOARG00000016290	APOBEC3F	98	44.505	Ovis_aries
ENSOCUG00000023913	-	81	41.341	ENSPPAG00000036522	APOBEC3H	98	41.341	Pan_paniscus
ENSOCUG00000023913	-	90	41.530	ENSPPRG00000003941	-	93	41.530	Panthera_pardus
ENSOCUG00000023913	-	74	45.355	ENSPPRG00000003675	-	94	45.355	Panthera_pardus
ENSOCUG00000023913	-	90	41.530	ENSPTIG00000010283	-	93	41.530	Panthera_tigris_altaica
ENSOCUG00000023913	-	81	41.341	ENSPTRG00000014390	APOBEC3H	98	41.341	Pan_troglodytes
ENSOCUG00000023913	-	88	44.693	ENSPANG00000010774	APOBEC3H	93	44.693	Papio_anubis
ENSOCUG00000023913	-	100	39.583	ENSPEMG00000000456	Apobec3	97	39.583	Peromyscus_maniculatus_bairdii
ENSOCUG00000023913	-	89	38.830	ENSPPYG00000011834	-	89	38.830	Pongo_abelii
ENSOCUG00000023913	-	87	35.028	ENSPCAG00000015655	-	100	35.028	Procavia_capensis
ENSOCUG00000023913	-	88	41.808	ENSPVAG00000009462	-	100	41.808	Pteropus_vampyrus
ENSOCUG00000023913	-	61	48.462	ENSPVAG00000024267	-	98	48.462	Pteropus_vampyrus
ENSOCUG00000023913	-	61	49.231	ENSPVAG00000024161	-	98	49.231	Pteropus_vampyrus
ENSOCUG00000023913	-	99	42.680	ENSRNOG00000016852	Apobec3	100	42.680	Rattus_norvegicus
ENSOCUG00000023913	-	89	42.021	ENSRBIG00000029088	APOBEC3H	92	42.553	Rhinopithecus_bieti
ENSOCUG00000023913	-	90	42.408	ENSRROG00000024699	APOBEC3H	92	42.553	Rhinopithecus_roxellana
ENSOCUG00000023913	-	78	43.646	ENSSBOG00000030005	APOBEC3H	99	43.646	Saimiri_boliviensis_boliviensis
ENSOCUG00000023913	-	100	42.250	ENSSSCG00000000091	APOBEC3B	96	42.250	Sus_scrofa
ENSOCUG00000023913	-	82	42.012	ENSTBEG00000001532	-	99	42.012	Tupaia_belangeri
ENSOCUG00000023913	-	84	42.045	ENSTTRG00000001266	-	99	42.045	Tursiops_truncatus
ENSOCUG00000023913	-	89	41.489	ENSUAMG00000004427	-	85	41.489	Ursus_americanus
ENSOCUG00000023913	-	89	44.000	ENSUMAG00000014435	-	95	44.000	Ursus_maritimus
ENSOCUG00000023913	-	53	48.936	ENSVPAG00000011108	-	97	48.936	Vicugna_pacos