EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSOCUG00000027424 (Gene tree)
Gene ID: 100343320
Gene Symbol: PRPF38B
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Oryctolagus_cuniculus
Status: putative
Strand: Minus strand
Length: 10951 bases
Position: chr13:55529742-55540692
Accession: 100343320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOCUP00000016446	PRP38	PF03371.15	6.7e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOCUT00000030253	PRPF38B-201	5972	XM_008264779	ENSOCUP00000016446	454 (aa)	XP_008263001	G1THN5

Gene Model

Click here to download ENSOCUG00000027424's gene model file

Pathways

Pathway ID	Pathway Name	Source
ocu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSOCUG00000027424's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOCUG00000027424	PRPF38B	100	97.137	ENSCJAG00000002510	-	100	97.011	Callithrix_jacchus
ENSOCUG00000027424	PRPF38B	96	94.253	ENSTSYG00000029817	PRPF38B	97	94.062	Carlito_syrichta
ENSOCUG00000027424	PRPF38B	100	97.577	ENSCCAG00000033941	-	83	97.577	Cebus_capucinus
ENSOCUG00000027424	PRPF38B	100	98.458	ENSCSAG00000001531	PRPF38B	83	98.458	Chlorocebus_sabaeus
ENSOCUG00000027424	PRPF38B	100	98.678	ENSCANG00000027711	PRPF38B	83	98.678	Colobus_angolensis_palliatus
ENSOCUG00000027424	PRPF38B	100	97.577	ENSLAFG00000017112	PRPF38B	83	97.577	Loxodonta_africana
ENSOCUG00000027424	PRPF38B	100	98.678	ENSMMUG00000010155	PRPF38B	83	98.678	Macaca_mulatta
ENSOCUG00000027424	PRPF38B	100	98.458	ENSMNEG00000032003	-	83	98.458	Macaca_nemestrina
ENSOCUG00000027424	PRPF38B	100	97.577	ENSMICG00000032109	PRPF38B	83	97.577	Microcebus_murinus
ENSOCUG00000027424	PRPF38B	96	96.092	ENSODEG00000007646	PRPF38B	97	95.962	Octodon_degus
ENSOCUG00000027424	PRPF38B	100	97.797	ENSPPYG00000001092	PRPF38B	83	97.797	Pongo_abelii
ENSOCUG00000027424	PRPF38B	100	97.797	ENSPCOG00000016051	PRPF38B	83	97.797	Propithecus_coquereli
ENSOCUG00000027424	PRPF38B	100	98.238	ENSRBIG00000043351	PRPF38B	83	98.238	Rhinopithecus_bieti
ENSOCUG00000027424	PRPF38B	100	98.238	ENSRROG00000029232	PRPF38B	83	98.238	Rhinopithecus_roxellana