EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000000263 (Gene tree)
Gene ID: -
Gene Symbol: PCBP1
Alias: -
Full Name: poly(rC)-binding protein 1-like
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 1068 bases
Position: chrJH651870.1:746821-747888
Accession: 101572809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000000295	KH_1	PF00013.29	1.3e-38	1	3
ENSODEP00000000295	KH_1	PF00013.29	1.3e-38	2	3
ENSODEP00000000295	KH_1	PF00013.29	1.3e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000000313	PCBP1-201	1035	XM_012513191	ENSODEP00000000295	344 (aa)	XP_012368645	-

Gene Model

Click here to download ENSODEG00000000263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000000263's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000000263	PCBP1	89	54.128	ENSODEG00000015604	-	100	54.128
ENSODEG00000000263	PCBP1	100	58.289	ENSODEG00000013422	-	100	58.289
ENSODEG00000000263	PCBP1	100	54.645	ENSODEG00000003534	-	100	54.645
ENSODEG00000000263	PCBP1	100	66.038	ENSODEG00000006995	-	100	66.038
ENSODEG00000000263	PCBP1	99	62.873	ENSODEG00000013052	-	100	62.873
ENSODEG00000000263	PCBP1	99	63.492	ENSODEG00000020292	-	93	63.492
ENSODEG00000000263	PCBP1	97	47.214	ENSODEG00000018230	PCBP4	75	47.214
ENSODEG00000000263	PCBP1	100	67.102	ENSODEG00000013186	PCBP2	100	67.102
ENSODEG00000000263	PCBP1	54	38.961	ENSODEG00000008485	NOVA2	50	38.961
ENSODEG00000000263	PCBP1	99	54.348	ENSODEG00000012873	PCBP3	91	54.348

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000000263	PCBP1	100	83.427	ENSG00000169564	PCBP1	100	83.427	Homo_sapiens
ENSODEG00000000263	PCBP1	100	80.618	ENSAMEG00000016094	PCBP1	100	80.618	Ailuropoda_melanoleuca
ENSODEG00000000263	PCBP1	100	73.876	ENSANAG00000023938	-	100	73.876	Aotus_nancymaae
ENSODEG00000000263	PCBP1	100	76.744	ENSANAG00000026077	-	100	76.744	Aotus_nancymaae
ENSODEG00000000263	PCBP1	97	80.058	ENSANAG00000026989	-	99	80.058	Aotus_nancymaae
ENSODEG00000000263	PCBP1	88	71.519	ENSANAG00000027108	-	100	71.519	Aotus_nancymaae
ENSODEG00000000263	PCBP1	79	76.408	ENSANAG00000031745	-	100	76.408	Aotus_nancymaae
ENSODEG00000000263	PCBP1	79	73.498	ENSANAG00000022494	-	100	73.498	Aotus_nancymaae
ENSODEG00000000263	PCBP1	79	75.610	ENSANAG00000019364	-	100	75.610	Aotus_nancymaae
ENSODEG00000000263	PCBP1	100	69.806	ENSANAG00000033377	-	100	69.806	Aotus_nancymaae
ENSODEG00000000263	PCBP1	91	81.790	ENSBTAG00000008985	PCBP1	99	81.790	Bos_taurus
ENSODEG00000000263	PCBP1	100	78.652	ENSCJAG00000038388	-	95	78.652	Callithrix_jacchus
ENSODEG00000000263	PCBP1	100	83.146	ENSCAFG00000003326	PCBP1	100	83.146	Canis_familiaris
ENSODEG00000000263	PCBP1	100	83.427	ENSCHIG00000007923	PCBP1	100	83.427	Capra_hircus
ENSODEG00000000263	PCBP1	100	82.865	ENSTSYG00000027848	PCBP1	100	82.865	Carlito_syrichta
ENSODEG00000000263	PCBP1	100	83.427	ENSCPOG00000013511	PCBP1	100	83.427	Cavia_porcellus
ENSODEG00000000263	PCBP1	100	75.623	ENSCCAG00000029186	-	98	75.623	Cebus_capucinus
ENSODEG00000000263	PCBP1	100	83.427	ENSCCAG00000019842	-	100	83.427	Cebus_capucinus
ENSODEG00000000263	PCBP1	100	83.427	ENSCATG00000015029	PCBP1	100	83.427	Cercocebus_atys
ENSODEG00000000263	PCBP1	100	82.865	ENSCLAG00000017909	PCBP1	100	82.865	Chinchilla_lanigera
ENSODEG00000000263	PCBP1	100	83.427	ENSCSAG00000019441	PCBP1	100	83.427	Chlorocebus_sabaeus
ENSODEG00000000263	PCBP1	52	86.111	ENSCANG00000033810	-	62	86.111	Colobus_angolensis_palliatus
ENSODEG00000000263	PCBP1	100	83.427	ENSCANG00000018039	-	100	83.427	Colobus_angolensis_palliatus
ENSODEG00000000263	PCBP1	100	74.157	ENSCANG00000032470	-	94	74.157	Colobus_angolensis_palliatus
ENSODEG00000000263	PCBP1	100	83.427	ENSCGRG00001015078	Pcbp1	100	83.427	Cricetulus_griseus_chok1gshd
ENSODEG00000000263	PCBP1	100	83.427	ENSCGRG00000018899	Pcbp1	100	83.427	Cricetulus_griseus_crigri
ENSODEG00000000263	PCBP1	79	78.621	ENSDNOG00000036372	PCBP1	99	78.621	Dasypus_novemcinctus
ENSODEG00000000263	PCBP1	100	83.427	ENSDORG00000008216	Pcbp1	100	83.427	Dipodomys_ordii
ENSODEG00000000263	PCBP1	100	83.427	ENSFCAG00000022238	PCBP1	100	83.427	Felis_catus
ENSODEG00000000263	PCBP1	100	83.146	ENSFDAG00000019637	PCBP1	100	83.146	Fukomys_damarensis
ENSODEG00000000263	PCBP1	100	83.427	ENSGGOG00000028130	PCBP1	100	83.427	Gorilla_gorilla
ENSODEG00000000263	PCBP1	100	83.146	ENSHGLG00000020345	Pcbp1	100	83.146	Heterocephalus_glaber_female
ENSODEG00000000263	PCBP1	100	81.717	ENSHGLG00000020243	-	100	81.717	Heterocephalus_glaber_female
ENSODEG00000000263	PCBP1	100	82.865	ENSHGLG00100019620	-	100	82.865	Heterocephalus_glaber_male
ENSODEG00000000263	PCBP1	100	83.146	ENSHGLG00100019761	Pcbp1	100	83.146	Heterocephalus_glaber_male
ENSODEG00000000263	PCBP1	100	83.427	ENSSTOG00000026002	PCBP1	100	83.427	Ictidomys_tridecemlineatus
ENSODEG00000000263	PCBP1	100	83.427	ENSJJAG00000000737	Pcbp1	100	83.427	Jaculus_jaculus
ENSODEG00000000263	PCBP1	94	71.513	ENSMFAG00000003400	PCBP1	100	71.513	Macaca_fascicularis
ENSODEG00000000263	PCBP1	100	83.427	ENSMMUG00000038295	PCBP1	100	83.427	Macaca_mulatta
ENSODEG00000000263	PCBP1	100	83.427	ENSMNEG00000002934	PCBP1	100	83.427	Macaca_nemestrina
ENSODEG00000000263	PCBP1	100	83.427	ENSMLEG00000027389	PCBP1	100	83.427	Mandrillus_leucophaeus
ENSODEG00000000263	PCBP1	100	83.427	ENSMAUG00000009843	Pcbp1	100	83.427	Mesocricetus_auratus
ENSODEG00000000263	PCBP1	100	83.427	ENSMICG00000038221	PCBP1	100	83.427	Microcebus_murinus
ENSODEG00000000263	PCBP1	100	83.427	ENSMOCG00000008102	Pcbp1	100	83.427	Microtus_ochrogaster
ENSODEG00000000263	PCBP1	100	83.427	MGP_CAROLIEiJ_G0028598	Pcbp1	100	83.427	Mus_caroli
ENSODEG00000000263	PCBP1	100	83.427	ENSMUSG00000051695	Pcbp1	100	83.427	Mus_musculus
ENSODEG00000000263	PCBP1	100	83.427	MGP_PahariEiJ_G0022335	Pcbp1	100	83.427	Mus_pahari
ENSODEG00000000263	PCBP1	100	83.427	MGP_SPRETEiJ_G0029609	Pcbp1	100	83.427	Mus_spretus
ENSODEG00000000263	PCBP1	100	80.618	ENSMPUG00000007175	PCBP1	100	80.618	Mustela_putorius_furo
ENSODEG00000000263	PCBP1	100	83.427	ENSMLUG00000014173	PCBP1	100	83.427	Myotis_lucifugus
ENSODEG00000000263	PCBP1	100	83.427	ENSNGAG00000011957	-	100	83.427	Nannospalax_galili
ENSODEG00000000263	PCBP1	100	83.427	ENSNGAG00000014909	-	100	83.427	Nannospalax_galili
ENSODEG00000000263	PCBP1	100	83.427	ENSNLEG00000018722	PCBP1	100	83.427	Nomascus_leucogenys
ENSODEG00000000263	PCBP1	100	83.427	ENSOCUG00000003634	PCBP1	100	83.427	Oryctolagus_cuniculus
ENSODEG00000000263	PCBP1	100	80.618	ENSOGAG00000028946	PCBP1	100	80.618	Otolemur_garnettii
ENSODEG00000000263	PCBP1	100	83.427	ENSOARG00000019516	PCBP1	100	83.427	Ovis_aries
ENSODEG00000000263	PCBP1	100	81.742	ENSPPAG00000036116	PCBP1	99	82.353	Pan_paniscus
ENSODEG00000000263	PCBP1	100	83.427	ENSPPRG00000020533	PCBP1	100	83.427	Panthera_pardus
ENSODEG00000000263	PCBP1	100	83.427	ENSPTIG00000007318	PCBP1	100	83.427	Panthera_tigris_altaica
ENSODEG00000000263	PCBP1	100	83.427	ENSPTRG00000012025	PCBP1	100	83.427	Pan_troglodytes
ENSODEG00000000263	PCBP1	100	83.427	ENSPANG00000011314	PCBP1	100	83.427	Papio_anubis
ENSODEG00000000263	PCBP1	100	83.427	ENSPPYG00000012328	PCBP1	100	83.427	Pongo_abelii
ENSODEG00000000263	PCBP1	100	83.427	ENSPCOG00000026934	PCBP1	100	83.427	Propithecus_coquereli
ENSODEG00000000263	PCBP1	93	81.325	ENSRROG00000012514	-	100	81.325	Rhinopithecus_roxellana
ENSODEG00000000263	PCBP1	100	82.865	ENSRROG00000009684	-	95	82.865	Rhinopithecus_roxellana
ENSODEG00000000263	PCBP1	100	70.655	ENSSBOG00000035309	-	94	70.655	Saimiri_boliviensis_boliviensis
ENSODEG00000000263	PCBP1	100	83.146	ENSSSCG00000027224	PCBP1	100	83.146	Sus_scrofa
ENSODEG00000000263	PCBP1	52	93.333	ENSTBEG00000015706	-	51	93.333	Tupaia_belangeri
ENSODEG00000000263	PCBP1	90	80.183	ENSVVUG00000028033	PCBP1	99	80.183	Vulpes_vulpes