EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000000596 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 1131 bases
Position: chrJH653016.1:197-1327
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000000720	Smg4_UPF3	PF03467.15	8.8e-24	1	1
ENSODEP00000000719	Smg4_UPF3	PF03467.15	9.4e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000000743	-	555	-	ENSODEP00000000719	185 (aa)	-	-
ENSODET00000000744	-	564	-	ENSODEP00000000720	187 (aa)	-	-

Gene Model

Click here to download ENSODEG00000000596's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000000596's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000000596	-	100	67.580	ENSODEG00000006064	-	100	67.580
ENSODEG00000000596	-	99	61.502	ENSODEG00000007164	-	95	61.502
ENSODEG00000000596	-	68	48.889	ENSODEG00000009176	-	53	49.630
ENSODEG00000000596	-	95	71.292	ENSODEG00000002186	-	51	71.560

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000000596	-	100	68.493	ENSG00000125351	UPF3B	100	68.493	Homo_sapiens
ENSODEG00000000596	-	67	59.398	ENSACIG00000020468	upf3a	52	62.025	Amphilophus_citrinellus
ENSODEG00000000596	-	95	68.137	ENSANAG00000025598	-	67	64.593	Aotus_nancymaae
ENSODEG00000000596	-	86	65.169	ENSANAG00000033169	-	75	61.194	Aotus_nancymaae
ENSODEG00000000596	-	95	68.421	ENSANAG00000021894	-	97	68.421	Aotus_nancymaae
ENSODEG00000000596	-	95	68.421	ENSBTAG00000035615	UPF3B	71	68.807	Bos_taurus
ENSODEG00000000596	-	59	59.322	ENSBTAG00000047365	-	53	60.169	Bos_taurus
ENSODEG00000000596	-	95	68.900	ENSCJAG00000004975	UPF3B	97	68.900	Callithrix_jacchus
ENSODEG00000000596	-	95	67.943	ENSCHIG00000018011	-	71	68.349	Capra_hircus
ENSODEG00000000596	-	95	68.900	ENSTSYG00000014690	UPF3B	96	63.256	Carlito_syrichta
ENSODEG00000000596	-	89	69.318	ENSCCAG00000029813	-	73	65.969	Cebus_capucinus
ENSODEG00000000596	-	95	49.735	ENSCCAG00000021964	-	63	51.269	Cebus_capucinus
ENSODEG00000000596	-	95	69.378	ENSCATG00000017506	UPF3B	97	69.378	Cercocebus_atys
ENSODEG00000000596	-	67	36.842	ENSCING00000008396	-	71	41.228	Ciona_intestinalis
ENSODEG00000000596	-	95	69.378	ENSCANG00000029220	UPF3B	68	70.046	Colobus_angolensis_palliatus
ENSODEG00000000596	-	95	60.287	ENSCGRG00001013643	-	59	61.290	Cricetulus_griseus_chok1gshd
ENSODEG00000000596	-	59	63.025	ENSGALG00000016815	-	55	63.025	Gallus_gallus
ENSODEG00000000596	-	66	62.879	ENSGACG00000017435	upf3b	51	63.571	Gasterosteus_aculeatus
ENSODEG00000000596	-	59	61.345	ENSGAGG00000001952	UPF3A	67	62.185	Gopherus_agassizii
ENSODEG00000000596	-	95	69.378	ENSGGOG00000023995	UPF3B	80	62.025	Gorilla_gorilla
ENSODEG00000000596	-	94	60.577	ENSHGLG00000011189	-	51	61.751	Heterocephalus_glaber_female
ENSODEG00000000596	-	94	60.577	ENSHGLG00100001889	-	52	61.468	Heterocephalus_glaber_male
ENSODEG00000000596	-	66	58.333	ENSHCOG00000013985	upf3a	52	60.800	Hippocampus_comes
ENSODEG00000000596	-	76	46.667	ENSSTOG00000030282	-	54	51.493	Ictidomys_tridecemlineatus
ENSODEG00000000596	-	59	52.941	ENSJJAG00000018099	-	55	53.782	Jaculus_jaculus
ENSODEG00000000596	-	100	50.000	ENSMFAG00000045275	-	100	51.739	Macaca_fascicularis
ENSODEG00000000596	-	95	69.378	ENSMFAG00000045414	UPF3B	97	69.378	Macaca_fascicularis
ENSODEG00000000596	-	100	52.970	ENSMMUG00000046682	-	100	54.950	Macaca_mulatta
ENSODEG00000000596	-	95	69.378	ENSMMUG00000020222	UPF3B	97	69.378	Macaca_mulatta
ENSODEG00000000596	-	95	69.378	ENSMNEG00000039794	UPF3B	97	69.378	Macaca_nemestrina
ENSODEG00000000596	-	100	49.565	ENSMNEG00000040898	-	100	51.304	Macaca_nemestrina
ENSODEG00000000596	-	95	69.378	ENSMLEG00000010999	UPF3B	97	69.378	Mandrillus_leucophaeus
ENSODEG00000000596	-	95	69.378	ENSMICG00000001743	UPF3B	68	70.046	Microcebus_murinus
ENSODEG00000000596	-	95	45.876	ENSNBRG00000011560	upf3b	94	45.876	Neolamprologus_brichardi
ENSODEG00000000596	-	100	60.294	ENSNLEG00000027516	-	100	60.294	Nomascus_leucogenys
ENSODEG00000000596	-	88	68.367	ENSNLEG00000014897	UPF3B	79	61.074	Nomascus_leucogenys
ENSODEG00000000596	-	95	69.378	ENSPPAG00000040390	UPF3B	80	62.025	Pan_paniscus
ENSODEG00000000596	-	95	68.900	ENSPTIG00000015264	UPF3B	68	69.585	Panthera_tigris_altaica
ENSODEG00000000596	-	95	69.378	ENSPTRG00000022228	UPF3B	80	62.025	Pan_troglodytes
ENSODEG00000000596	-	95	69.378	ENSPANG00000000900	UPF3B	97	69.378	Papio_anubis
ENSODEG00000000596	-	99	53.333	ENSPANG00000029350	-	99	53.810	Papio_anubis
ENSODEG00000000596	-	68	63.433	ENSPKIG00000019226	upf3b	51	61.250	Paramormyrops_kingsleyae
ENSODEG00000000596	-	66	64.394	ENSPMGG00000016067	upf3b	51	64.539	Periophthalmus_magnuspinnatus
ENSODEG00000000596	-	67	56.391	ENSPCIG00000019590	-	52	58.824	Phascolarctos_cinereus
ENSODEG00000000596	-	95	69.378	ENSPPYG00000020675	-	66	69.725	Pongo_abelii
ENSODEG00000000596	-	95	69.856	ENSPCOG00000021960	UPF3B	68	70.507	Propithecus_coquereli
ENSODEG00000000596	-	95	69.378	ENSRROG00000041031	UPF3B	97	69.378	Rhinopithecus_roxellana
ENSODEG00000000596	-	95	67.943	ENSSBOG00000019740	UPF3B	99	67.464	Saimiri_boliviensis_boliviensis
ENSODEG00000000596	-	67	59.398	ENSSMAG00000003858	upf3a	54	59.756	Scophthalmus_maximus
ENSODEG00000000596	-	67	59.398	ENSSPAG00000007938	upf3a	61	59.398	Stegastes_partitus
ENSODEG00000000596	-	95	68.900	ENSVVUG00000011594	UPF3B	97	68.900	Vulpes_vulpes
ENSODEG00000000596	-	69	63.235	ENSXETG00000007440	upf3b	61	65.957	Xenopus_tropicalis
ENSODEG00000000596	-	67	63.158	ENSXCOG00000016586	upf3b	98	48.731	Xiphophorus_couchianus