EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000001290 (Gene tree)
Gene ID: 101561729
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 132909 bases
Position: chrJH651648.1:2870913-3003821
Accession: 101561729
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000001632	Upf2	PF04050.14	5.4e-33	1	1
ENSODEP00000001632	MIF4G	PF02854.19	3.3e-76	1	3
ENSODEP00000001632	MIF4G	PF02854.19	3.3e-76	2	3
ENSODEP00000001632	MIF4G	PF02854.19	3.3e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000001672	UPF2-201	5177	XM_004641272	ENSODEP00000001632	1270 (aa)	XP_004641329	UPI00033374B2

Gene Model

Click here to download ENSODEG00000001290's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000001290's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000001290	UPF2	100	96.619	ENSG00000151461	UPF2	100	96.619	Homo_sapiens
ENSODEG00000001290	UPF2	99	77.561	ENSAPOG00000015837	UPF2	100	77.508	Acanthochromis_polyacanthus
ENSODEG00000001290	UPF2	100	97.404	ENSAMEG00000004586	UPF2	100	97.404	Ailuropoda_melanoleuca
ENSODEG00000001290	UPF2	99	81.626	ENSACIG00000018078	UPF2	100	81.704	Amphilophus_citrinellus
ENSODEG00000001290	UPF2	100	81.620	ENSAOCG00000016766	UPF2	100	81.733	Amphiprion_ocellaris
ENSODEG00000001290	UPF2	100	81.698	ENSAPEG00000019084	UPF2	100	81.811	Amphiprion_percula
ENSODEG00000001290	UPF2	100	81.634	ENSATEG00000021677	UPF2	99	81.712	Anabas_testudineus
ENSODEG00000001290	UPF2	100	86.399	ENSAPLG00000010287	UPF2	90	90.791	Anas_platyrhynchos
ENSODEG00000001290	UPF2	100	91.267	ENSACAG00000009259	UPF2	100	91.581	Anolis_carolinensis
ENSODEG00000001290	UPF2	99	87.569	ENSANAG00000028451	UPF2	99	85.602	Aotus_nancymaae
ENSODEG00000001290	UPF2	100	80.874	ENSACLG00000012696	UPF2	100	81.733	Astatotilapia_calliptera
ENSODEG00000001290	UPF2	99	82.551	ENSAMXG00000013700	UPF2	99	82.003	Astyanax_mexicanus
ENSODEG00000001290	UPF2	100	97.325	ENSBTAG00000000288	UPF2	100	97.325	Bos_taurus
ENSODEG00000001290	UPF2	100	96.617	ENSCJAG00000020685	UPF2	100	96.617	Callithrix_jacchus
ENSODEG00000001290	UPF2	100	97.561	ENSCAFG00000004839	UPF2	100	97.561	Canis_familiaris
ENSODEG00000001290	UPF2	99	94.563	ENSCAFG00020005882	UPF2	98	97.329	Canis_lupus_dingo
ENSODEG00000001290	UPF2	100	97.404	ENSCHIG00000020359	UPF2	100	97.404	Capra_hircus
ENSODEG00000001290	UPF2	100	95.830	ENSTSYG00000000935	UPF2	97	99.432	Carlito_syrichta
ENSODEG00000001290	UPF2	91	88.038	ENSCAPG00000016658	UPF2	95	87.608	Cavia_aperea
ENSODEG00000001290	UPF2	99	96.987	ENSCPOG00000008809	UPF2	100	96.987	Cavia_porcellus
ENSODEG00000001290	UPF2	100	91.109	ENSCCAG00000035991	UPF2	100	91.109	Cebus_capucinus
ENSODEG00000001290	UPF2	100	96.777	ENSCATG00000032679	UPF2	100	96.777	Cercocebus_atys
ENSODEG00000001290	UPF2	100	98.740	ENSCLAG00000011434	UPF2	100	98.740	Chinchilla_lanigera
ENSODEG00000001290	UPF2	100	96.777	ENSCSAG00000013372	UPF2	100	96.777	Chlorocebus_sabaeus
ENSODEG00000001290	UPF2	87	98.438	ENSCHOG00000000422	UPF2	89	98.438	Choloepus_hoffmanni
ENSODEG00000001290	UPF2	99	92.350	ENSCPBG00000027823	UPF2	100	92.114	Chrysemys_picta_bellii
ENSODEG00000001290	UPF2	79	48.865	ENSCSAVG00000007772	-	99	48.467	Ciona_savignyi
ENSODEG00000001290	UPF2	99	89.844	ENSCANG00000040396	UPF2	100	89.221	Colobus_angolensis_palliatus
ENSODEG00000001290	UPF2	100	97.404	ENSCGRG00001019347	Upf2	100	97.404	Cricetulus_griseus_chok1gshd
ENSODEG00000001290	UPF2	100	97.404	ENSCGRG00000017993	Upf2	100	97.404	Cricetulus_griseus_crigri
ENSODEG00000001290	UPF2	91	80.985	ENSCSEG00000003520	UPF2	91	80.498	Cynoglossus_semilaevis
ENSODEG00000001290	UPF2	99	81.412	ENSCVAG00000006167	UPF2	100	81.020	Cyprinodon_variegatus
ENSODEG00000001290	UPF2	100	97.089	ENSDNOG00000018160	UPF2	100	97.089	Dasypus_novemcinctus
ENSODEG00000001290	UPF2	100	97.718	ENSDORG00000002478	Upf2	100	97.718	Dipodomys_ordii
ENSODEG00000001290	UPF2	89	36.139	FBgn0029992	Upf2	90	39.040	Drosophila_melanogaster
ENSODEG00000001290	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSODEG00000001290	UPF2	69	68.358	ENSEBUG00000012448	-	87	73.154	Eptatretus_burgeri
ENSODEG00000001290	UPF2	100	97.323	ENSEASG00005019274	UPF2	100	97.323	Equus_asinus_asinus
ENSODEG00000001290	UPF2	100	97.402	ENSECAG00000017022	UPF2	100	97.402	Equus_caballus
ENSODEG00000001290	UPF2	82	93.291	ENSEEUG00000007819	UPF2	82	93.291	Erinaceus_europaeus
ENSODEG00000001290	UPF2	99	80.610	ENSELUG00000012014	UPF2	100	80.575	Esox_lucius
ENSODEG00000001290	UPF2	100	98.895	ENSFCAG00000005785	UPF2	100	97.246	Felis_catus
ENSODEG00000001290	UPF2	100	92.683	ENSFALG00000001889	UPF2	98	93.155	Ficedula_albicollis
ENSODEG00000001290	UPF2	100	98.425	ENSFDAG00000014348	UPF2	100	98.425	Fukomys_damarensis
ENSODEG00000001290	UPF2	99	81.818	ENSFHEG00000009826	UPF2	99	81.423	Fundulus_heteroclitus
ENSODEG00000001290	UPF2	91	82.699	ENSGMOG00000005557	UPF2	100	79.703	Gadus_morhua
ENSODEG00000001290	UPF2	100	93.160	ENSGALG00000033772	UPF2	100	92.217	Gallus_gallus
ENSODEG00000001290	UPF2	100	79.829	ENSGAFG00000020867	UPF2	100	80.607	Gambusia_affinis
ENSODEG00000001290	UPF2	91	84.397	ENSGACG00000001080	UPF2	100	81.357	Gasterosteus_aculeatus
ENSODEG00000001290	UPF2	100	92.054	ENSGAGG00000002700	UPF2	100	92.447	Gopherus_agassizii
ENSODEG00000001290	UPF2	100	96.619	ENSGGOG00000001479	UPF2	100	96.619	Gorilla_gorilla
ENSODEG00000001290	UPF2	100	80.718	ENSHBUG00000004249	UPF2	100	81.704	Haplochromis_burtoni
ENSODEG00000001290	UPF2	99	87.392	ENSHGLG00000003822	-	99	86.367	Heterocephalus_glaber_female
ENSODEG00000001290	UPF2	100	98.504	ENSHGLG00000015176	-	100	98.504	Heterocephalus_glaber_female
ENSODEG00000001290	UPF2	99	95.426	ENSHGLG00100010036	UPF2	100	95.426	Heterocephalus_glaber_male
ENSODEG00000001290	UPF2	100	79.860	ENSHCOG00000004025	UPF2	99	79.860	Hippocampus_comes
ENSODEG00000001290	UPF2	100	80.967	ENSIPUG00000015524	UPF2	100	81.513	Ictalurus_punctatus
ENSODEG00000001290	UPF2	100	97.876	ENSSTOG00000013075	UPF2	100	97.876	Ictidomys_tridecemlineatus
ENSODEG00000001290	UPF2	100	96.696	ENSJJAG00000004913	Upf2	100	96.696	Jaculus_jaculus
ENSODEG00000001290	UPF2	92	84.681	ENSKMAG00000001071	UPF2	92	84.269	Kryptolebias_marmoratus
ENSODEG00000001290	UPF2	100	81.712	ENSLBEG00000016394	-	99	81.839	Labrus_bergylta
ENSODEG00000001290	UPF2	80	81.004	ENSLBEG00000000728	-	93	81.102	Labrus_bergylta
ENSODEG00000001290	UPF2	91	80.825	ENSLACG00000015945	UPF2	100	78.213	Latimeria_chalumnae
ENSODEG00000001290	UPF2	99	84.791	ENSLOCG00000015698	UPF2	100	84.712	Lepisosteus_oculatus
ENSODEG00000001290	UPF2	100	96.698	ENSMFAG00000043865	UPF2	100	96.698	Macaca_fascicularis
ENSODEG00000001290	UPF2	100	96.698	ENSMMUG00000008241	UPF2	100	96.698	Macaca_mulatta
ENSODEG00000001290	UPF2	81	95.220	ENSMNEG00000008062	UPF2	99	94.515	Macaca_nemestrina
ENSODEG00000001290	UPF2	95	97.108	ENSMLEG00000036120	UPF2	100	97.343	Mandrillus_leucophaeus
ENSODEG00000001290	UPF2	100	81.231	ENSMAMG00000018276	UPF2	100	81.231	Mastacembelus_armatus
ENSODEG00000001290	UPF2	100	80.874	ENSMZEG00005021595	UPF2	100	81.733	Maylandia_zebra
ENSODEG00000001290	UPF2	99	92.604	ENSMGAG00000004573	UPF2	99	91.660	Meleagris_gallopavo
ENSODEG00000001290	UPF2	100	95.201	ENSMAUG00000016512	Upf2	100	95.201	Mesocricetus_auratus
ENSODEG00000001290	UPF2	95	98.980	ENSMICG00000001716	UPF2	99	98.974	Microcebus_murinus
ENSODEG00000001290	UPF2	100	96.850	ENSMOCG00000008263	Upf2	100	96.850	Microtus_ochrogaster
ENSODEG00000001290	UPF2	99	79.124	ENSMMOG00000006528	UPF2	100	78.845	Mola_mola
ENSODEG00000001290	UPF2	100	94.571	ENSMODG00000016794	UPF2	100	95.043	Monodelphis_domestica
ENSODEG00000001290	UPF2	99	81.299	ENSMALG00000002663	UPF2	100	81.299	Monopterus_albus
ENSODEG00000001290	UPF2	100	96.932	MGP_CAROLIEiJ_G0023157	Upf2	100	97.467	Mus_caroli
ENSODEG00000001290	UPF2	100	96.932	ENSMUSG00000043241	Upf2	100	96.932	Mus_musculus
ENSODEG00000001290	UPF2	100	96.853	MGP_PahariEiJ_G0019217	Upf2	100	96.853	Mus_pahari
ENSODEG00000001290	UPF2	100	97.168	MGP_SPRETEiJ_G0024075	Upf2	100	97.168	Mus_spretus
ENSODEG00000001290	UPF2	100	97.246	ENSMPUG00000001064	UPF2	100	97.246	Mustela_putorius_furo
ENSODEG00000001290	UPF2	99	97.172	ENSMLUG00000000228	UPF2	100	97.172	Myotis_lucifugus
ENSODEG00000001290	UPF2	100	80.874	ENSNBRG00000013629	UPF2	100	81.733	Neolamprologus_brichardi
ENSODEG00000001290	UPF2	100	96.541	ENSNLEG00000012058	UPF2	100	96.541	Nomascus_leucogenys
ENSODEG00000001290	UPF2	51	97.409	ENSMEUG00000002180	-	54	97.409	Notamacropus_eugenii
ENSODEG00000001290	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSODEG00000001290	UPF2	100	80.952	ENSONIG00000017991	UPF2	100	81.811	Oreochromis_niloticus
ENSODEG00000001290	UPF2	99	96.549	ENSOCUG00000006230	UPF2	100	96.549	Oryctolagus_cuniculus
ENSODEG00000001290	UPF2	100	81.167	ENSORLG00000017189	UPF2	100	80.841	Oryzias_latipes
ENSODEG00000001290	UPF2	100	81.167	ENSORLG00020005969	UPF2	100	80.841	Oryzias_latipes_hni
ENSODEG00000001290	UPF2	100	81.167	ENSORLG00015005713	UPF2	100	80.841	Oryzias_latipes_hsok
ENSODEG00000001290	UPF2	99	77.925	ENSOMEG00000023420	UPF2	98	77.908	Oryzias_melastigma
ENSODEG00000001290	UPF2	100	96.853	ENSOGAG00000005796	UPF2	100	96.853	Otolemur_garnettii
ENSODEG00000001290	UPF2	100	97.251	ENSOARG00000014587	UPF2	100	97.251	Ovis_aries
ENSODEG00000001290	UPF2	99	92.103	ENSPPAG00000037953	UPF2	100	91.575	Pan_paniscus
ENSODEG00000001290	UPF2	100	97.246	ENSPPRG00000000690	UPF2	100	97.246	Panthera_pardus
ENSODEG00000001290	UPF2	100	97.246	ENSPTIG00000008867	UPF2	100	97.246	Panthera_tigris_altaica
ENSODEG00000001290	UPF2	100	96.619	ENSPTRG00000002291	UPF2	100	96.619	Pan_troglodytes
ENSODEG00000001290	UPF2	100	96.698	ENSPANG00000023399	UPF2	100	96.698	Papio_anubis
ENSODEG00000001290	UPF2	100	80.811	ENSPKIG00000025502	UPF2	100	79.875	Paramormyrops_kingsleyae
ENSODEG00000001290	UPF2	59	91.102	ENSPSIG00000015158	UPF2	95	91.633	Pelodiscus_sinensis
ENSODEG00000001290	UPF2	99	78.145	ENSPMGG00000005259	UPF2	100	78.964	Periophthalmus_magnuspinnatus
ENSODEG00000001290	UPF2	93	94.461	ENSPEMG00000015731	Upf2	99	95.918	Peromyscus_maniculatus_bairdii
ENSODEG00000001290	UPF2	100	94.414	ENSPCIG00000006656	UPF2	100	94.650	Phascolarctos_cinereus
ENSODEG00000001290	UPF2	100	80.016	ENSPFOG00000017118	UPF2	100	80.796	Poecilia_formosa
ENSODEG00000001290	UPF2	100	79.984	ENSPLAG00000005094	UPF2	100	80.763	Poecilia_latipinna
ENSODEG00000001290	UPF2	100	79.984	ENSPMEG00000017009	UPF2	100	80.763	Poecilia_mexicana
ENSODEG00000001290	UPF2	99	79.938	ENSPREG00000021880	UPF2	100	81.001	Poecilia_reticulata
ENSODEG00000001290	UPF2	66	97.727	ENSPPYG00000002089	-	100	97.727	Pongo_abelii
ENSODEG00000001290	UPF2	100	82.140	ENSPCAG00000000684	UPF2	100	82.612	Procavia_capensis
ENSODEG00000001290	UPF2	99	93.932	ENSPCOG00000021656	UPF2	100	94.090	Propithecus_coquereli
ENSODEG00000001290	UPF2	100	89.308	ENSPVAG00000017286	UPF2	100	89.701	Pteropus_vampyrus
ENSODEG00000001290	UPF2	99	78.421	ENSPNYG00000017096	UPF2	100	79.281	Pundamilia_nyererei
ENSODEG00000001290	UPF2	100	82.761	ENSPNAG00000009357	UPF2	100	82.293	Pygocentrus_nattereri
ENSODEG00000001290	UPF2	99	90.502	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSODEG00000001290	UPF2	99	94.637	ENSRBIG00000037780	UPF2	100	94.953	Rhinopithecus_bieti
ENSODEG00000001290	UPF2	100	95.597	ENSRROG00000043547	UPF2	100	95.126	Rhinopithecus_roxellana
ENSODEG00000001290	UPF2	100	96.223	ENSSBOG00000020012	UPF2	100	96.538	Saimiri_boliviensis_boliviensis
ENSODEG00000001290	UPF2	100	81.357	ENSSFOG00015023788	upf2	100	82.605	Scleropages_formosus
ENSODEG00000001290	UPF2	90	82.480	ENSSMAG00000007637	UPF2	100	79.054	Scophthalmus_maximus
ENSODEG00000001290	UPF2	100	81.464	ENSSDUG00000017244	UPF2	99	81.811	Seriola_dumerili
ENSODEG00000001290	UPF2	99	79.984	ENSSLDG00000016866	UPF2	100	80.329	Seriola_lalandi_dorsalis
ENSODEG00000001290	UPF2	100	93.234	ENSSARG00000008615	UPF2	100	94.807	Sorex_araneus
ENSODEG00000001290	UPF2	99	89.370	ENSSPUG00000014544	UPF2	99	89.764	Sphenodon_punctatus
ENSODEG00000001290	UPF2	68	98.044	ENSSSCG00000011117	-	100	98.044	Sus_scrofa
ENSODEG00000001290	UPF2	99	92.429	ENSTGUG00000002163	-	100	92.902	Taeniopygia_guttata
ENSODEG00000001290	UPF2	100	81.386	ENSTRUG00000007519	UPF2	99	81.464	Takifugu_rubripes
ENSODEG00000001290	UPF2	100	79.316	ENSTNIG00000004453	UPF2	100	79.082	Tetraodon_nigroviridis
ENSODEG00000001290	UPF2	93	89.077	ENSTBEG00000012679	UPF2	93	88.654	Tupaia_belangeri
ENSODEG00000001290	UPF2	100	96.929	ENSTTRG00000016388	UPF2	100	96.929	Tursiops_truncatus
ENSODEG00000001290	UPF2	94	99.306	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSODEG00000001290	UPF2	100	97.561	ENSUMAG00000012953	UPF2	95	97.561	Ursus_maritimus
ENSODEG00000001290	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSODEG00000001290	UPF2	100	97.482	ENSVVUG00000006166	UPF2	100	97.482	Vulpes_vulpes
ENSODEG00000001290	UPF2	100	82.308	ENSXETG00000033103	UPF2	100	80.934	Xenopus_tropicalis
ENSODEG00000001290	UPF2	99	79.407	ENSXCOG00000011604	UPF2	100	80.655	Xiphophorus_couchianus
ENSODEG00000001290	UPF2	100	79.829	ENSXMAG00000017209	UPF2	100	80.607	Xiphophorus_maculatus