EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000001292 (Gene tree)
Gene ID: 101568696
Gene Symbol: -
Alias: -
Full Name: La ribonucleoprotein domain family member 1B
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 18253 bases
Position: chrJH651583.1:5180839-5199091
Accession: 101568696
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000001634	La	PF05383.17	2.2e-22	1	1
ENSODEP00000001635	La	PF05383.17	4.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000001674	-	1005	XM_012515541	ENSODEP00000001634	334 (aa)	-	-
ENSODET00000001675	-	864	-	ENSODEP00000001635	287 (aa)	-	-

Gene Model

Click here to download ENSODEG00000001292's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000001292's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000001292	-	100	87.164	ENSG00000138709	LARP1B	100	87.164	Homo_sapiens
ENSODEG00000001292	-	100	88.358	ENSAMEG00000002748	LARP1B	100	88.358	Ailuropoda_melanoleuca
ENSODEG00000001292	-	99	74.772	ENSANAG00000034618	LARP1B	96	74.772	Aotus_nancymaae
ENSODEG00000001292	-	98	85.758	ENSBTAG00000012135	LARP1B	63	85.758	Bos_taurus
ENSODEG00000001292	-	100	87.761	ENSCJAG00000003338	LARP1B	100	87.761	Callithrix_jacchus
ENSODEG00000001292	-	100	87.847	ENSCAFG00020018899	LARP1B	100	87.847	Canis_lupus_dingo
ENSODEG00000001292	-	100	85.467	ENSCHIG00000023144	LARP1B	100	84.429	Capra_hircus
ENSODEG00000001292	-	99	84.321	ENSTSYG00000002037	-	99	84.321	Carlito_syrichta
ENSODEG00000001292	-	100	75.347	ENSCPOG00000034668	-	92	99.107	Cavia_porcellus
ENSODEG00000001292	-	99	88.024	ENSCCAG00000021948	LARP1B	99	88.024	Cebus_capucinus
ENSODEG00000001292	-	100	84.478	ENSCATG00000013541	LARP1B	100	84.478	Cercocebus_atys
ENSODEG00000001292	-	100	91.940	ENSCLAG00000006448	-	100	91.940	Chinchilla_lanigera
ENSODEG00000001292	-	100	87.847	ENSCANG00000026958	LARP1B	100	87.847	Colobus_angolensis_palliatus
ENSODEG00000001292	-	100	86.458	ENSCGRG00001004660	-	100	86.458	Cricetulus_griseus_chok1gshd
ENSODEG00000001292	-	100	86.458	ENSCGRG00000001914	-	100	86.458	Cricetulus_griseus_crigri
ENSODEG00000001292	-	98	84.802	ENSDNOG00000018765	-	64	84.802	Dasypus_novemcinctus
ENSODEG00000001292	-	99	88.922	ENSEASG00005018106	LARP1B	99	88.922	Equus_asinus_asinus
ENSODEG00000001292	-	100	88.060	ENSFCAG00000014650	-	100	88.060	Felis_catus
ENSODEG00000001292	-	100	87.164	ENSGGOG00000015900	LARP1B	100	87.164	Gorilla_gorilla
ENSODEG00000001292	-	100	86.431	ENSHGLG00000006728	-	99	86.726	Heterocephalus_glaber_female
ENSODEG00000001292	-	98	74.164	ENSHGLG00000013922	-	96	73.860	Heterocephalus_glaber_female
ENSODEG00000001292	-	100	87.463	ENSHGLG00100014041	-	96	86.567	Heterocephalus_glaber_male
ENSODEG00000001292	-	98	74.164	ENSHGLG00100016491	-	96	73.860	Heterocephalus_glaber_male
ENSODEG00000001292	-	90	72.201	ENSSTOG00000033183	-	100	72.201	Ictidomys_tridecemlineatus
ENSODEG00000001292	-	100	84.524	ENSSTOG00000008596	-	100	84.226	Ictidomys_tridecemlineatus
ENSODEG00000001292	-	99	74.545	ENSSTOG00000021917	-	94	75.758	Ictidomys_tridecemlineatus
ENSODEG00000001292	-	96	70.405	ENSSTOG00000034510	-	87	70.093	Ictidomys_tridecemlineatus
ENSODEG00000001292	-	99	82.927	ENSJJAG00000022360	Larp1b	99	82.927	Jaculus_jaculus
ENSODEG00000001292	-	97	66.972	ENSLACG00000015247	LARP1B	84	67.173	Latimeria_chalumnae
ENSODEG00000001292	-	99	86.310	ENSLAFG00000008473	-	99	86.228	Loxodonta_africana
ENSODEG00000001292	-	100	88.060	ENSMFAG00000002218	LARP1B	100	88.060	Macaca_fascicularis
ENSODEG00000001292	-	100	65.278	ENSMFAG00000003306	-	94	82.051	Macaca_fascicularis
ENSODEG00000001292	-	100	88.060	ENSMMUG00000021347	LARP1B	100	88.060	Macaca_mulatta
ENSODEG00000001292	-	65	87.413	ENSMNEG00000027747	-	89	87.413	Macaca_nemestrina
ENSODEG00000001292	-	84	55.785	ENSMZEG00005002545	larp1b	52	56.015	Maylandia_zebra
ENSODEG00000001292	-	100	85.764	ENSMAUG00000007879	-	100	85.764	Mesocricetus_auratus
ENSODEG00000001292	-	97	65.644	ENSMICG00000028052	-	63	65.337	Microcebus_murinus
ENSODEG00000001292	-	98	78.322	ENSMICG00000037883	-	88	77.544	Microcebus_murinus
ENSODEG00000001292	-	100	88.060	ENSMICG00000036111	LARP1B	100	88.060	Microcebus_murinus
ENSODEG00000001292	-	79	88.213	ENSMOCG00000001490	Larp1b	95	88.213	Microtus_ochrogaster
ENSODEG00000001292	-	100	85.417	MGP_CAROLIEiJ_G0024962	Larp1b	100	85.417	Mus_caroli
ENSODEG00000001292	-	100	86.111	ENSMUSG00000025762	Larp1b	100	86.111	Mus_musculus
ENSODEG00000001292	-	100	85.075	MGP_PahariEiJ_G0026403	Larp1b	100	85.075	Mus_pahari
ENSODEG00000001292	-	100	86.111	MGP_SPRETEiJ_G0025897	Larp1b	100	86.111	Mus_spretus
ENSODEG00000001292	-	100	87.164	ENSNLEG00000013819	LARP1B	100	87.164	Nomascus_leucogenys
ENSODEG00000001292	-	100	86.866	ENSPPAG00000030439	LARP1B	100	86.866	Pan_paniscus
ENSODEG00000001292	-	100	88.060	ENSPPRG00000002743	-	100	88.060	Panthera_pardus
ENSODEG00000001292	-	100	88.060	ENSPTIG00000011225	LARP1B	100	88.060	Panthera_tigris_altaica
ENSODEG00000001292	-	100	86.567	ENSPTRG00000016437	LARP1B	100	86.567	Pan_troglodytes
ENSODEG00000001292	-	100	87.761	ENSPANG00000012488	LARP1B	100	87.761	Papio_anubis
ENSODEG00000001292	-	99	80.723	ENSPCIG00000026516	LARP1B	86	81.346	Phascolarctos_cinereus
ENSODEG00000001292	-	96	50.427	ENSPFOG00000022837	-	50	50.000	Poecilia_formosa
ENSODEG00000001292	-	80	54.225	ENSPREG00000005955	-	89	53.873	Poecilia_reticulata
ENSODEG00000001292	-	100	87.463	ENSPCOG00000021874	LARP1B	100	87.463	Propithecus_coquereli
ENSODEG00000001292	-	100	86.567	ENSRNOG00000038366	Larp1b	100	86.567	Rattus_norvegicus
ENSODEG00000001292	-	100	85.672	ENSRBIG00000039982	-	100	85.672	Rhinopithecus_bieti
ENSODEG00000001292	-	100	79.403	ENSRBIG00000038568	-	92	79.403	Rhinopithecus_bieti
ENSODEG00000001292	-	100	80.623	ENSRROG00000038525	-	96	80.623	Rhinopithecus_roxellana
ENSODEG00000001292	-	100	88.060	ENSRROG00000030771	LARP1B	100	88.060	Rhinopithecus_roxellana
ENSODEG00000001292	-	99	53.659	ENSSSCG00000040491	-	99	52.613	Sus_scrofa
ENSODEG00000001292	-	98	88.146	ENSSSCG00000034280	LARP1B	63	88.146	Sus_scrofa
ENSODEG00000001292	-	100	78.144	ENSUAMG00000016938	-	90	90.476	Ursus_americanus
ENSODEG00000001292	-	98	87.538	ENSVVUG00000011307	LARP1B	65	87.538	Vulpes_vulpes