EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSODEG00000002186 (Gene tree)
Gene ID
101560443
Gene Symbol
-
Alias
-
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Octodon_degus
Status
putative
Strand
Minus strand
Length
21725 bases
Position
chrJH651751.1:3277782-3299506
Accession
101560443
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSODEP00000002848Smg4_UPF3PF03467.151.8e-5311
ENSODEP00000002847Smg4_UPF3PF03467.152.1e-5311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSODET00000002911-1377-ENSODEP00000002847458 (aa)--
ENSODET00000002912-1281XM_004645717ENSODEP00000002848426 (aa)XP_023561805-
Gene Model
Click here to download ENSODEG00000002186's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000002186's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSODEG00000002186-5171.560ENSODEG00000000596-9571.292
ENSODEG00000002186-5173.272ENSODEG00000006064-9473.077
ENSODEG00000002186-5280.702ENSODEG00000007164-9080.569
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSODEG00000002186-8450.367ENSG00000169062UPF3A8748.624Homo_sapiens
ENSODEG00000002186-10087.447ENSG00000125351UPF3B9696.635Homo_sapiens
ENSODEG00000002186-9653.392ENSAPOG00000012775upf3b9656.236Acanthochromis_polyacanthus
ENSODEG00000002186-10088.085ENSAMEG00000000163UPF3B10088.298Ailuropoda_melanoleuca
ENSODEG00000002186-9246.396ENSAMEG00000004259UPF3A9540.044Ailuropoda_melanoleuca
ENSODEG00000002186-9452.328ENSACIG00000013582upf3b9454.167Amphilophus_citrinellus
ENSODEG00000002186-9655.120ENSAOCG00000000706upf3b9755.724Amphiprion_ocellaris
ENSODEG00000002186-9656.427ENSAPEG00000005545upf3b9657.081Amphiprion_percula
ENSODEG00000002186-9654.762ENSATEG00000018742upf3b9656.250Anabas_testudineus
ENSODEG00000002186-8550.361ENSACAG00000001540UPF3A9350.123Anolis_carolinensis
ENSODEG00000002186-9166.820ENSACAG00000003625UPF3B9964.211Anolis_carolinensis
ENSODEG00000002186-8443.951ENSANAG00000021713UPF3A8743.155Aotus_nancymaae
ENSODEG00000002186-6370.632ENSANAG00000033169-9568.978Aotus_nancymaae
ENSODEG00000002186-10087.447ENSANAG00000021894-10096.654Aotus_nancymaae
ENSODEG00000002186-10081.915ENSANAG00000025598-10092.035Aotus_nancymaae
ENSODEG00000002186-9655.652ENSACLG00000001649upf3b9756.494Astatotilapia_calliptera
ENSODEG00000002186-6361.210ENSAMXG00000000199upf3b8861.210Astyanax_mexicanus
ENSODEG00000002186-7297.026ENSBTAG00000035615UPF3B10097.026Bos_taurus
ENSODEG00000002186-8848.821ENSCJAG00000019102UPF3A9143.177Callithrix_jacchus
ENSODEG00000002186-10087.447ENSCJAG00000004975UPF3B10096.654Callithrix_jacchus
ENSODEG00000002186-8943.925ENSCAFG00000006504UPF3A9042.155Canis_familiaris
ENSODEG00000002186-10085.300ENSCAFG00000018426UPF3B10087.364Canis_familiaris
ENSODEG00000002186-10085.319ENSCAFG00020004074UPF3B10094.872Canis_lupus_dingo
ENSODEG00000002186-8943.925ENSCAFG00020014268UPF3A8742.155Canis_lupus_dingo
ENSODEG00000002186-10084.472ENSCHIG00000000247-10084.679Capra_hircus
ENSODEG00000002186-9883.898ENSCHIG00000018011-10096.654Capra_hircus
ENSODEG00000002186-9062.740ENSCHIG00000011454-9858.636Capra_hircus
ENSODEG00000002186-10087.447ENSTSYG00000014690UPF3B10093.878Carlito_syrichta
ENSODEG00000002186-7491.837ENSCCAG00000021964-10091.837Cebus_capucinus
ENSODEG00000002186-9955.699ENSCCAG00000029813-8769.630Cebus_capucinus
ENSODEG00000002186-8449.756ENSCCAG00000018406UPF3A8743.880Cebus_capucinus
ENSODEG00000002186-8848.372ENSCATG00000029733UPF3A9046.667Cercocebus_atys
ENSODEG00000002186-10087.660ENSCATG00000017506UPF3B10097.026Cercocebus_atys
ENSODEG00000002186-10088.511ENSCLAG00000003260UPF3B10088.723Chinchilla_lanigera
ENSODEG00000002186-10085.093ENSCSAG00000018348UPF3B10085.300Chlorocebus_sabaeus
ENSODEG00000002186-8848.499ENSCSAG00000017388UPF3A9046.578Chlorocebus_sabaeus
ENSODEG00000002186-9961.845ENSCPBG00000020685UPF3B9961.845Chrysemys_picta_bellii
ENSODEG00000002186-7497.026ENSCANG00000029220UPF3B10097.026Colobus_angolensis_palliatus
ENSODEG00000002186-10077.542ENSCGRG00001006858-10077.966Cricetulus_griseus_chok1gshd
ENSODEG00000002186-8282.051ENSCGRG00001013643-9479.251Cricetulus_griseus_chok1gshd
ENSODEG00000002186-8978.810ENSCGRG00000007627Upf3b10079.286Cricetulus_griseus_crigri
ENSODEG00000002186-9356.404ENSCSEG00000002046upf3b9057.175Cynoglossus_semilaevis
ENSODEG00000002186-9551.096ENSCVAG00000005030upf3b9652.203Cyprinodon_variegatus
ENSODEG00000002186-9751.883ENSDARG00000000489upf3b9756.000Danio_rerio
ENSODEG00000002186-10083.230ENSDNOG00000008665UPF3B10083.437Dasypus_novemcinctus
ENSODEG00000002186-8350.559ENSDNOG00000034391UPF3A7055.793Dasypus_novemcinctus
ENSODEG00000002186-10082.090ENSDORG00000006077Upf3b10082.303Dipodomys_ordii
ENSODEG00000002186-8642.891ENSETEG00000010110UPF3A8937.054Echinops_telfairi
ENSODEG00000002186-9048.961ENSEASG00005021884UPF3A8744.104Equus_asinus_asinus
ENSODEG00000002186-9985.501ENSEASG00005012919UPF3B10093.805Equus_asinus_asinus
ENSODEG00000002186-9048.174ENSECAG00000017141UPF3A8743.357Equus_caballus
ENSODEG00000002186-9985.501ENSECAG00000016947UPF3B10085.965Equus_caballus
ENSODEG00000002186-7858.790ENSELUG00000020389upf3b10051.600Esox_lucius
ENSODEG00000002186-9446.336ENSFCAG00000014602UPF3A8743.908Felis_catus
ENSODEG00000002186-10086.653ENSFCAG00000004388UPF3B10087.500Felis_catus
ENSODEG00000002186-9962.624ENSFALG00000001569UPF3B9962.425Ficedula_albicollis
ENSODEG00000002186-10089.574ENSFDAG00000018869UPF3B10089.787Fukomys_damarensis
ENSODEG00000002186-9352.018ENSFHEG00000017895upf3b9353.915Fundulus_heteroclitus
ENSODEG00000002186-9352.863ENSGMOG00000001621upf3b9353.524Gadus_morhua
ENSODEG00000002186-9965.690ENSGALG00000008618UPF3B9965.063Gallus_gallus
ENSODEG00000002186-9653.377ENSGAFG00000000829upf3b9655.165Gambusia_affinis
ENSODEG00000002186-9155.756ENSGACG00000017435upf3b9467.279Gasterosteus_aculeatus
ENSODEG00000002186-9964.990ENSGAGG00000001219UPF3B9964.990Gopherus_agassizii
ENSODEG00000002186-10087.447ENSGGOG00000023995UPF3B10097.026Gorilla_gorilla
ENSODEG00000002186-8640.238ENSGGOG00000043074-8636.993Gorilla_gorilla
ENSODEG00000002186-8342.786ENSGGOG00000041219-8836.804Gorilla_gorilla
ENSODEG00000002186-8450.122ENSGGOG00000015428UPF3A9147.033Gorilla_gorilla
ENSODEG00000002186-9655.435ENSHBUG00000017393upf3b9756.277Haplochromis_burtoni
ENSODEG00000002186-10089.362ENSHGLG00000019582-10089.574Heterocephalus_glaber_female
ENSODEG00000002186-6854.082ENSHGLG00000001544UPF3A6646.897Heterocephalus_glaber_female
ENSODEG00000002186-7787.651ENSHGLG00000011189-9086.544Heterocephalus_glaber_female
ENSODEG00000002186-10086.383ENSHGLG00100002042-10086.809Heterocephalus_glaber_male
ENSODEG00000002186-7787.651ENSHGLG00100001889-9085.752Heterocephalus_glaber_male
ENSODEG00000002186-6854.082ENSHGLG00100013244UPF3A6646.897Heterocephalus_glaber_male
ENSODEG00000002186-10053.320ENSHCOG00000017004upf3b10053.320Hippocampus_comes
ENSODEG00000002186-10053.196ENSIPUG00000019249upf3b10054.227Ictalurus_punctatus
ENSODEG00000002186-10085.532ENSSTOG00000001101UPF3B10085.745Ictidomys_tridecemlineatus
ENSODEG00000002186-10081.568ENSJJAG00000000053Upf3b10081.992Jaculus_jaculus
ENSODEG00000002186-5054.717ENSKMAG00000004381upf3a8350.121Kryptolebias_marmoratus
ENSODEG00000002186-9652.079ENSKMAG00000020300upf3b9655.022Kryptolebias_marmoratus
ENSODEG00000002186-6566.192ENSLBEG00000028689upf3b5866.667Labrus_bergylta
ENSODEG00000002186-6434.211ENSLACG00000006645UPF3A7565.385Latimeria_chalumnae
ENSODEG00000002186-9058.957ENSLACG00000008691UPF3B10056.162Latimeria_chalumnae
ENSODEG00000002186-9053.409ENSLOCG00000002665upf3a9153.182Lepisosteus_oculatus
ENSODEG00000002186-5175.424ENSLOCG00000015238upf3b9958.734Lepisosteus_oculatus
ENSODEG00000002186-8843.095ENSLAFG00000023358UPF3A9942.721Loxodonta_africana
ENSODEG00000002186-10085.532ENSLAFG00000001267UPF3B10085.745Loxodonta_africana
ENSODEG00000002186-10087.447ENSMFAG00000045414UPF3B10097.026Macaca_fascicularis
ENSODEG00000002186-5171.681ENSMFAG00000045275-9470.968Macaca_fascicularis
ENSODEG00000002186-8149.367ENSMMUG00000007449UPF3A8647.816Macaca_mulatta
ENSODEG00000002186-10087.447ENSMMUG00000020222UPF3B10097.026Macaca_mulatta
ENSODEG00000002186-5168.584ENSMMUG00000046682-9467.742Macaca_mulatta
ENSODEG00000002186-8647.754ENSMNEG00000036402UPF3A8347.045Macaca_nemestrina
ENSODEG00000002186-10087.447ENSMNEG00000039794UPF3B10097.026Macaca_nemestrina
ENSODEG00000002186-5171.239ENSMNEG00000040898-9470.507Macaca_nemestrina
ENSODEG00000002186-8647.518ENSMLEG00000014726UPF3A9446.809Mandrillus_leucophaeus
ENSODEG00000002186-10087.660ENSMLEG00000010999UPF3B10097.026Mandrillus_leucophaeus
ENSODEG00000002186-9655.652ENSMZEG00005007871upf3b9756.494Maylandia_zebra
ENSODEG00000002186-8549.275ENSMGAG00000014837UPF3A9848.317Meleagris_gallopavo
ENSODEG00000002186-8066.150ENSMGAG00000007728UPF3B9966.150Meleagris_gallopavo
ENSODEG00000002186-10076.907ENSMAUG00000008705Upf3b10077.119Mesocricetus_auratus
ENSODEG00000002186-7496.667ENSMICG00000001743UPF3B10096.667Microcebus_murinus
ENSODEG00000002186-10077.320ENSMOCG00000017893Upf3b10077.732Microtus_ochrogaster
ENSODEG00000002186-9553.744ENSMMOG00000004183upf3b9655.022Mola_mola
ENSODEG00000002186-8750.701ENSMODG00000003159UPF3A9650.234Monodelphis_domestica
ENSODEG00000002186-8970.188ENSMODG00000010232UPF3B9970.588Monodelphis_domestica
ENSODEG00000002186-7561.801ENSMALG00000008042upf3b9654.095Monopterus_albus
ENSODEG00000002186-10077.331MGP_CAROLIEiJ_G0032999Upf3b10077.754Mus_caroli
ENSODEG00000002186-10077.754ENSMUSG00000036572Upf3b10078.178Mus_musculus
ENSODEG00000002186-10076.483MGP_PahariEiJ_G0031543Upf3b10076.907Mus_pahari
ENSODEG00000002186-10077.754MGP_SPRETEiJ_G0034152Upf3b10078.178Mus_spretus
ENSODEG00000002186-9244.018ENSMPUG00000009139UPF3A8941.943Mustela_putorius_furo
ENSODEG00000002186-9887.364ENSMPUG00000001531UPF3B10087.582Mustela_putorius_furo
ENSODEG00000002186-10086.596ENSMLUG00000010821UPF3B10086.809Myotis_lucifugus
ENSODEG00000002186-8549.398ENSMLUG00000015905UPF3A9543.552Myotis_lucifugus
ENSODEG00000002186-10078.390ENSNGAG00000008231Upf3b10080.508Nannospalax_galili
ENSODEG00000002186-9787.090ENSNLEG00000014897UPF3B10087.447Nomascus_leucogenys
ENSODEG00000002186-5175.115ENSNLEG00000027516-9474.519Nomascus_leucogenys
ENSODEG00000002186-8450.000ENSNLEG00000007563UPF3A8947.309Nomascus_leucogenys
ENSODEG00000002186-6583.871ENSMEUG00000015615UPF3B7183.974Notamacropus_eugenii
ENSODEG00000002186-5054.673ENSONIG00000006817upf3a8351.332Oreochromis_niloticus
ENSODEG00000002186-10055.809ENSONIG00000002536upf3b10057.025Oreochromis_niloticus
ENSODEG00000002186-8860.606ENSOANG00000002594-9957.343Ornithorhynchus_anatinus
ENSODEG00000002186-7846.334ENSOANG00000006985-7450.836Ornithorhynchus_anatinus
ENSODEG00000002186-10084.679ENSOCUG00000010213UPF3B10084.886Oryctolagus_cuniculus
ENSODEG00000002186-9851.464ENSORLG00000001026upf3b9954.968Oryzias_latipes
ENSODEG00000002186-8452.068ENSORLG00000010911upf3a8345.721Oryzias_latipes
ENSODEG00000002186-8448.578ENSORLG00020014317upf3a8345.455Oryzias_latipes_hni
ENSODEG00000002186-9850.833ENSORLG00020003758upf3b9954.526Oryzias_latipes_hni
ENSODEG00000002186-9851.255ENSORLG00015012954upf3b9955.158Oryzias_latipes_hsok
ENSODEG00000002186-8756.295ENSOMEG00000014736upf3b9954.140Oryzias_melastigma
ENSODEG00000002186-10087.872ENSOGAG00000004643-10088.085Otolemur_garnettii
ENSODEG00000002186-9775.217ENSOGAG00000033003-10075.652Otolemur_garnettii
ENSODEG00000002186-10083.951ENSOARG00000016051-10084.156Ovis_aries
ENSODEG00000002186-8948.730ENSOARG00000009004UPF3A8748.380Ovis_aries
ENSODEG00000002186-9067.386ENSOARG00000007869-9964.916Ovis_aries
ENSODEG00000002186-10087.447ENSPPAG00000040390UPF3B10097.026Pan_paniscus
ENSODEG00000002186-8449.878ENSPPAG00000042267UPF3A9147.007Pan_paniscus
ENSODEG00000002186-10087.660ENSPPRG00000023536UPF3B10087.872Panthera_pardus
ENSODEG00000002186-9446.552ENSPPRG00000025062UPF3A8744.138Panthera_pardus
ENSODEG00000002186-10083.264ENSPTIG00000015264UPF3B10097.398Panthera_tigris_altaica
ENSODEG00000002186-8338.442ENSPTRG00000041187-8739.196Pan_troglodytes
ENSODEG00000002186-10087.447ENSPTRG00000022228UPF3B10097.026Pan_troglodytes
ENSODEG00000002186-8449.878ENSPTRG00000006073UPF3A9147.007Pan_troglodytes
ENSODEG00000002186-8339.196ENSPTRG00000041835-9236.993Pan_troglodytes
ENSODEG00000002186-8341.562ENSPTRG00000051640-9235.437Pan_troglodytes
ENSODEG00000002186-10087.660ENSPANG00000000900UPF3B10097.026Papio_anubis
ENSODEG00000002186-9245.708ENSPANG00000004346UPF3A9046.120Papio_anubis
ENSODEG00000002186-5071.556ENSPANG00000029350-9370.833Papio_anubis
ENSODEG00000002186-10052.075ENSPKIG00000019226upf3b9365.823Paramormyrops_kingsleyae
ENSODEG00000002186-8651.064ENSPSIG00000007468UPF3A9950.469Pelodiscus_sinensis
ENSODEG00000002186-6273.783ENSPSIG00000005833UPF3B9075.591Pelodiscus_sinensis
ENSODEG00000002186-6665.385ENSPMGG00000016067upf3b9865.385Periophthalmus_magnuspinnatus
ENSODEG00000002186-10079.493ENSPEMG00000012352Upf3b10079.915Peromyscus_maniculatus_bairdii
ENSODEG00000002186-9267.269ENSPCIG00000028914UPF3B9665.142Phascolarctos_cinereus
ENSODEG00000002186-5356.769ENSPCIG00000019590-7363.842Phascolarctos_cinereus
ENSODEG00000002186-9654.846ENSPLAG00000005105upf3b9656.044Poecilia_latipinna
ENSODEG00000002186-9654.846ENSPLAG00000019922upf3b9656.044Poecilia_latipinna
ENSODEG00000002186-9655.066ENSPMEG00000023532upf3b9655.824Poecilia_mexicana
ENSODEG00000002186-7596.667ENSPPYG00000020675-9696.667Pongo_abelii
ENSODEG00000002186-8449.879ENSPPYG00000005536UPF3A8747.500Pongo_abelii
ENSODEG00000002186-10081.988ENSPCAG00000009464UPF3B10082.195Procavia_capensis
ENSODEG00000002186-10088.110ENSPCOG00000021960UPF3B10097.407Propithecus_coquereli
ENSODEG00000002186-10075.776ENSPVAG00000014075UPF3B10075.776Pteropus_vampyrus
ENSODEG00000002186-8845.940ENSPVAG00000005656UPF3A9138.852Pteropus_vampyrus
ENSODEG00000002186-9655.799ENSPNYG00000009846upf3b9656.739Pundamilia_nyererei
ENSODEG00000002186-9853.878ENSPNAG00000021528upf3b8666.667Pygocentrus_nattereri
ENSODEG00000002186-10078.178ENSRNOG00000039994Upf3b10078.602Rattus_norvegicus
ENSODEG00000002186-8648.104ENSRBIG00000034007UPF3A9646.256Rhinopithecus_bieti
ENSODEG00000002186-8184.073ENSRBIG00000037219UPF3B10084.334Rhinopithecus_bieti
ENSODEG00000002186-10087.447ENSRROG00000041031UPF3B10097.026Rhinopithecus_roxellana
ENSODEG00000002186-8648.104ENSRROG00000012212UPF3A8547.393Rhinopithecus_roxellana
ENSODEG00000002186-7944.819ENSSBOG00000029989UPF3A8540.838Saimiri_boliviensis_boliviensis
ENSODEG00000002186-10087.021ENSSBOG00000019740UPF3B10096.283Saimiri_boliviensis_boliviensis
ENSODEG00000002186-8749.417ENSSHAG00000009895UPF3A9849.415Sarcophilus_harrisii
ENSODEG00000002186-8770.813ENSSHAG00000008634UPF3B9966.525Sarcophilus_harrisii
ENSODEG00000002186-10057.652ENSSFOG00015005614upf3b10058.996Scleropages_formosus
ENSODEG00000002186-9351.225ENSSMAG00000012913upf3b8467.647Scophthalmus_maximus
ENSODEG00000002186-8942.923ENSSDUG00000009680upf3a5776.344Seriola_dumerili
ENSODEG00000002186-6565.836ENSSDUG00000005682upf3b9754.230Seriola_dumerili
ENSODEG00000002186-9653.796ENSSLDG00000003130upf3b9754.230Seriola_lalandi_dorsalis
ENSODEG00000002186-8973.502ENSSARG00000004147UPF3B10075.346Sorex_araneus
ENSODEG00000002186-9962.994ENSSPUG00000013082UPF3B9961.826Sphenodon_punctatus
ENSODEG00000002186-7860.355ENSSPAG00000009989upf3b9656.645Stegastes_partitus
ENSODEG00000002186-10087.234ENSSSCG00000012617UPF3B10086.809Sus_scrofa
ENSODEG00000002186-8352.970ENSTGUG00000009493UPF3A9952.970Taeniopygia_guttata
ENSODEG00000002186-8967.840ENSTGUG00000003413UPF3B9967.840Taeniopygia_guttata
ENSODEG00000002186-8357.179ENSTRUG00000010645upf3b9853.579Takifugu_rubripes
ENSODEG00000002186-9452.000ENSTNIG00000015763upf3b9550.000Tetraodon_nigroviridis
ENSODEG00000002186-10069.772ENSTBEG00000003229UPF3B10069.565Tupaia_belangeri
ENSODEG00000002186-10084.322ENSUAMG00000024565UPF3B10092.035Ursus_americanus
ENSODEG00000002186-9279.741ENSUMAG00000002150UPF3B9979.310Ursus_maritimus
ENSODEG00000002186-8483.415ENSVPAG00000009971UPF3B10083.659Vicugna_pacos
ENSODEG00000002186-8645.894ENSVPAG00000003525UPF3A9845.074Vicugna_pacos
ENSODEG00000002186-10085.532ENSVVUG00000011594UPF3B10095.726Vulpes_vulpes
ENSODEG00000002186-9142.237ENSVVUG00000013538UPF3A8839.651Vulpes_vulpes
ENSODEG00000002186-8344.335ENSXETG00000002572upf3a9044.417Xenopus_tropicalis
ENSODEG00000002186-8553.641ENSXETG00000007440upf3b7876.667Xenopus_tropicalis
ENSODEG00000002186-9651.528ENSXCOG00000016586upf3b9765.403Xiphophorus_couchianus
ENSODEG00000002186-9655.385ENSXMAG00000013680upf3b9655.604Xiphophorus_maculatus

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