EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000002307 (Gene tree)
Gene ID: 101561098
Gene Symbol: -
Alias: YDR378C
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 5586 bases
Position: chrJH651742.1:1263021-1268606
Accession: 101561098
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000003006	LSM	PF01423.22	1.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000003071	-	243	XM_004645438	ENSODEP00000003006	80 (aa)	XP_004645495	UPI0003340717

Gene Model

Click here to download ENSODEG00000002307's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000002307's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000002307	-	83	51.515	ENSODEG00000010328	-	78	51.515
ENSODEG00000002307	-	96	87.013	ENSODEG00000018684	-	100	87.013
ENSODEG00000002307	-	100	96.250	ENSODEG00000020420	-	100	96.250
ENSODEG00000002307	-	100	95.000	ENSODEG00000019419	-	100	95.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000002307	-	100	98.750	ENSG00000164167	LSM6	100	98.750	Homo_sapiens
ENSODEG00000002307	-	100	93.750	ENSAPOG00000019832	lsm6	100	93.750	Acanthochromis_polyacanthus
ENSODEG00000002307	-	100	98.750	ENSAMEG00000016671	LSM6	100	98.750	Ailuropoda_melanoleuca
ENSODEG00000002307	-	100	93.750	ENSACIG00000016711	lsm6	100	93.750	Amphilophus_citrinellus
ENSODEG00000002307	-	100	93.750	ENSAOCG00000002110	lsm6	52	93.750	Amphiprion_ocellaris
ENSODEG00000002307	-	100	93.750	ENSAPEG00000023992	lsm6	100	93.750	Amphiprion_percula
ENSODEG00000002307	-	100	93.750	ENSATEG00000012610	lsm6	100	93.750	Anabas_testudineus
ENSODEG00000002307	-	96	98.701	ENSAPLG00000012594	LSM6	99	98.701	Anas_platyrhynchos
ENSODEG00000002307	-	100	98.750	ENSACAG00000004004	LSM6	100	98.750	Anolis_carolinensis
ENSODEG00000002307	-	100	98.750	ENSANAG00000030568	-	100	98.750	Aotus_nancymaae
ENSODEG00000002307	-	100	85.000	ENSANAG00000021839	-	100	85.000	Aotus_nancymaae
ENSODEG00000002307	-	100	93.750	ENSACLG00000025621	lsm6	100	93.750	Astatotilapia_calliptera
ENSODEG00000002307	-	100	95.000	ENSAMXG00000038738	lsm6	100	95.000	Astyanax_mexicanus
ENSODEG00000002307	-	100	98.750	ENSBTAG00000014060	LSM6	100	98.750	Bos_taurus
ENSODEG00000002307	-	100	92.500	ENSBTAG00000052085	-	100	92.500	Bos_taurus
ENSODEG00000002307	-	94	80.000	WBGene00003080	lsm-6	97	80.000	Caenorhabditis_elegans
ENSODEG00000002307	-	100	98.750	ENSCJAG00000002482	LSM6	100	98.750	Callithrix_jacchus
ENSODEG00000002307	-	100	98.750	ENSCAFG00000007738	LSM6	100	98.750	Canis_familiaris
ENSODEG00000002307	-	100	98.750	ENSCAFG00020025902	LSM6	100	98.750	Canis_lupus_dingo
ENSODEG00000002307	-	89	98.592	ENSCHIG00000012864	-	100	98.592	Capra_hircus
ENSODEG00000002307	-	100	98.750	ENSCHIG00000010334	-	100	98.750	Capra_hircus
ENSODEG00000002307	-	100	82.500	ENSCHIG00000024198	-	95	82.500	Capra_hircus
ENSODEG00000002307	-	100	98.750	ENSTSYG00000026972	LSM6	100	98.750	Carlito_syrichta
ENSODEG00000002307	-	94	82.667	ENSTSYG00000012759	-	89	82.667	Carlito_syrichta
ENSODEG00000002307	-	81	95.385	ENSCAPG00000011179	-	100	95.385	Cavia_aperea
ENSODEG00000002307	-	100	98.750	ENSCAPG00000008104	LSM6	100	98.750	Cavia_aperea
ENSODEG00000002307	-	100	98.750	ENSCPOG00000032655	LSM6	100	98.750	Cavia_porcellus
ENSODEG00000002307	-	99	97.468	ENSCCAG00000020665	-	99	97.468	Cebus_capucinus
ENSODEG00000002307	-	100	98.750	ENSCCAG00000036437	LSM6	100	98.750	Cebus_capucinus
ENSODEG00000002307	-	100	98.750	ENSCATG00000002770	-	100	98.750	Cercocebus_atys
ENSODEG00000002307	-	100	72.500	ENSCATG00000038799	-	100	72.500	Cercocebus_atys
ENSODEG00000002307	-	89	78.873	ENSCLAG00000005685	-	100	78.873	Chinchilla_lanigera
ENSODEG00000002307	-	100	98.750	ENSCLAG00000005495	LSM6	100	98.750	Chinchilla_lanigera
ENSODEG00000002307	-	100	98.750	ENSCSAG00000003421	LSM6	100	98.750	Chlorocebus_sabaeus
ENSODEG00000002307	-	100	77.500	ENSCHOG00000003420	LSM6	100	77.500	Choloepus_hoffmanni
ENSODEG00000002307	-	100	98.750	ENSCPBG00000027472	LSM6	84	98.750	Chrysemys_picta_bellii
ENSODEG00000002307	-	95	94.737	ENSCING00000019152	-	93	94.737	Ciona_intestinalis
ENSODEG00000002307	-	95	96.053	ENSCSAVG00000002065	-	93	96.053	Ciona_savignyi
ENSODEG00000002307	-	100	98.750	ENSCANG00000006849	-	100	98.750	Colobus_angolensis_palliatus
ENSODEG00000002307	-	100	71.250	ENSCANG00000035214	-	100	71.250	Colobus_angolensis_palliatus
ENSODEG00000002307	-	100	98.750	ENSCANG00000041263	-	100	98.750	Colobus_angolensis_palliatus
ENSODEG00000002307	-	100	98.750	ENSCGRG00001017142	Lsm6	100	98.750	Cricetulus_griseus_chok1gshd
ENSODEG00000002307	-	100	98.750	ENSCGRG00000008320	Lsm6	100	98.750	Cricetulus_griseus_crigri
ENSODEG00000002307	-	100	93.750	ENSCSEG00000000423	lsm6	100	93.750	Cynoglossus_semilaevis
ENSODEG00000002307	-	100	93.750	ENSCVAG00000001592	lsm6	100	93.750	Cyprinodon_variegatus
ENSODEG00000002307	-	100	95.000	ENSDARG00000036995	lsm6	100	95.000	Danio_rerio
ENSODEG00000002307	-	86	98.551	ENSDNOG00000040186	-	74	98.551	Dasypus_novemcinctus
ENSODEG00000002307	-	100	97.500	ENSDNOG00000044848	-	100	97.500	Dasypus_novemcinctus
ENSODEG00000002307	-	100	98.750	ENSDORG00000000933	Lsm6	100	98.750	Dipodomys_ordii
ENSODEG00000002307	-	96	84.416	FBgn0034564	CG9344	97	84.416	Drosophila_melanogaster
ENSODEG00000002307	-	60	97.917	ENSETEG00000013098	LSM6	100	97.917	Echinops_telfairi
ENSODEG00000002307	-	100	97.500	ENSEBUG00000017073	lsm6	100	97.500	Eptatretus_burgeri
ENSODEG00000002307	-	86	98.551	ENSEASG00005001533	LSM6	72	98.551	Equus_asinus_asinus
ENSODEG00000002307	-	100	98.750	ENSECAG00000021036	LSM6	100	98.750	Equus_caballus
ENSODEG00000002307	-	99	70.886	ENSEEUG00000002101	LSM6	100	70.886	Erinaceus_europaeus
ENSODEG00000002307	-	100	95.000	ENSELUG00000014301	LSM6	100	95.000	Esox_lucius
ENSODEG00000002307	-	100	98.750	ENSFCAG00000003047	LSM6	100	98.750	Felis_catus
ENSODEG00000002307	-	100	98.750	ENSFALG00000005509	LSM6	92	98.750	Ficedula_albicollis
ENSODEG00000002307	-	100	98.750	ENSFDAG00000020913	-	100	98.750	Fukomys_damarensis
ENSODEG00000002307	-	100	86.250	ENSFDAG00000019073	-	100	86.250	Fukomys_damarensis
ENSODEG00000002307	-	100	93.750	ENSFHEG00000007948	lsm6	100	93.750	Fundulus_heteroclitus
ENSODEG00000002307	-	100	93.750	ENSGMOG00000015550	lsm6	100	93.750	Gadus_morhua
ENSODEG00000002307	-	100	98.750	ENSGALG00000009985	LSM6	100	98.750	Gallus_gallus
ENSODEG00000002307	-	100	93.750	ENSGAFG00000017763	lsm6	100	93.750	Gambusia_affinis
ENSODEG00000002307	-	99	94.937	ENSGACG00000017223	lsm6	99	94.937	Gasterosteus_aculeatus
ENSODEG00000002307	-	100	98.750	ENSGAGG00000020980	LSM6	100	98.750	Gopherus_agassizii
ENSODEG00000002307	-	100	98.750	ENSGGOG00000001310	LSM6	100	98.750	Gorilla_gorilla
ENSODEG00000002307	-	100	93.750	ENSHBUG00000008618	lsm6	100	93.750	Haplochromis_burtoni
ENSODEG00000002307	-	100	98.750	ENSHGLG00000000205	LSM6	100	98.750	Heterocephalus_glaber_female
ENSODEG00000002307	-	100	98.750	ENSHGLG00100014341	LSM6	100	98.750	Heterocephalus_glaber_male
ENSODEG00000002307	-	100	93.750	ENSHCOG00000005591	lsm6	100	93.750	Hippocampus_comes
ENSODEG00000002307	-	100	93.750	ENSIPUG00000004508	lsm6	100	93.750	Ictalurus_punctatus
ENSODEG00000002307	-	100	98.750	ENSSTOG00000002678	LSM6	100	98.750	Ictidomys_tridecemlineatus
ENSODEG00000002307	-	100	98.750	ENSJJAG00000013845	-	100	98.750	Jaculus_jaculus
ENSODEG00000002307	-	100	88.750	ENSJJAG00000011211	-	100	88.750	Jaculus_jaculus
ENSODEG00000002307	-	96	77.922	ENSJJAG00000016942	-	97	77.922	Jaculus_jaculus
ENSODEG00000002307	-	100	93.750	ENSKMAG00000004105	lsm6	100	93.750	Kryptolebias_marmoratus
ENSODEG00000002307	-	100	93.750	ENSLBEG00000018441	lsm6	100	93.750	Labrus_bergylta
ENSODEG00000002307	-	100	98.750	ENSLACG00000006937	LSM6	100	98.750	Latimeria_chalumnae
ENSODEG00000002307	-	100	95.000	ENSLOCG00000008852	lsm6	100	95.000	Lepisosteus_oculatus
ENSODEG00000002307	-	100	93.750	ENSLOCG00000017683	-	100	93.750	Lepisosteus_oculatus
ENSODEG00000002307	-	100	98.750	ENSLAFG00000001952	LSM6	100	98.750	Loxodonta_africana
ENSODEG00000002307	-	100	98.750	ENSMFAG00000033073	LSM6	100	98.750	Macaca_fascicularis
ENSODEG00000002307	-	100	98.750	ENSMNEG00000034820	-	100	98.750	Macaca_nemestrina
ENSODEG00000002307	-	100	73.750	ENSMNEG00000040412	-	100	73.750	Macaca_nemestrina
ENSODEG00000002307	-	100	98.750	ENSMLEG00000035153	LSM6	100	98.750	Mandrillus_leucophaeus
ENSODEG00000002307	-	100	93.750	ENSMAMG00000014029	lsm6	100	93.750	Mastacembelus_armatus
ENSODEG00000002307	-	100	93.750	ENSMZEG00005009146	lsm6	100	93.750	Maylandia_zebra
ENSODEG00000002307	-	100	98.750	ENSMGAG00000003802	LSM6	100	98.750	Meleagris_gallopavo
ENSODEG00000002307	-	100	98.750	ENSMAUG00000014938	Lsm6	100	98.750	Mesocricetus_auratus
ENSODEG00000002307	-	98	89.744	ENSMICG00000047411	-	92	89.744	Microcebus_murinus
ENSODEG00000002307	-	100	98.750	ENSMICG00000042599	LSM6	100	98.750	Microcebus_murinus
ENSODEG00000002307	-	100	98.750	ENSMOCG00000020049	Lsm6	100	98.750	Microtus_ochrogaster
ENSODEG00000002307	-	100	93.750	ENSMMOG00000005470	lsm6	100	93.750	Mola_mola
ENSODEG00000002307	-	100	87.500	ENSMMOG00000007379	-	100	87.500	Mola_mola
ENSODEG00000002307	-	100	98.750	ENSMODG00000000526	LSM6	100	98.750	Monodelphis_domestica
ENSODEG00000002307	-	100	93.750	ENSMALG00000002419	lsm6	100	93.750	Monopterus_albus
ENSODEG00000002307	-	100	98.750	MGP_CAROLIEiJ_G0031245	Lsm6	100	98.750	Mus_caroli
ENSODEG00000002307	-	100	98.750	ENSMUSG00000031683	Lsm6	100	98.750	Mus_musculus
ENSODEG00000002307	-	100	98.750	MGP_PahariEiJ_G0022851	Lsm6	100	98.750	Mus_pahari
ENSODEG00000002307	-	100	98.750	MGP_SPRETEiJ_G0032365	Lsm6	100	98.750	Mus_spretus
ENSODEG00000002307	-	99	98.734	ENSMPUG00000006936	LSM6	92	98.734	Mustela_putorius_furo
ENSODEG00000002307	-	100	98.750	ENSMLUG00000026355	LSM6	100	98.750	Myotis_lucifugus
ENSODEG00000002307	-	100	98.750	ENSNGAG00000019116	Lsm6	100	98.750	Nannospalax_galili
ENSODEG00000002307	-	100	93.750	ENSNBRG00000004887	lsm6	100	93.750	Neolamprologus_brichardi
ENSODEG00000002307	-	100	98.750	ENSNLEG00000005584	LSM6	100	98.750	Nomascus_leucogenys
ENSODEG00000002307	-	100	97.500	ENSOPRG00000011199	LSM6	100	97.500	Ochotona_princeps
ENSODEG00000002307	-	100	93.750	ENSONIG00000010005	lsm6	100	93.750	Oreochromis_niloticus
ENSODEG00000002307	-	98	73.077	ENSOANG00000006895	-	100	73.077	Ornithorhynchus_anatinus
ENSODEG00000002307	-	98	73.077	ENSOANG00000006894	-	100	73.077	Ornithorhynchus_anatinus
ENSODEG00000002307	-	100	92.500	ENSORLG00000024158	lsm6	100	92.500	Oryzias_latipes
ENSODEG00000002307	-	100	92.500	ENSORLG00020017383	lsm6	100	92.500	Oryzias_latipes_hni
ENSODEG00000002307	-	100	92.500	ENSORLG00015016903	lsm6	100	92.500	Oryzias_latipes_hsok
ENSODEG00000002307	-	100	93.750	ENSOMEG00000000074	lsm6	100	93.750	Oryzias_melastigma
ENSODEG00000002307	-	100	98.750	ENSOGAG00000026665	-	100	98.750	Otolemur_garnettii
ENSODEG00000002307	-	100	98.750	ENSOGAG00000033153	-	100	98.750	Otolemur_garnettii
ENSODEG00000002307	-	86	98.551	ENSOARG00000008509	-	88	98.551	Ovis_aries
ENSODEG00000002307	-	99	92.405	ENSOARG00000011641	-	92	92.405	Ovis_aries
ENSODEG00000002307	-	100	98.750	ENSPPAG00000037929	LSM6	100	98.750	Pan_paniscus
ENSODEG00000002307	-	100	98.750	ENSPPRG00000012806	LSM6	100	98.750	Panthera_pardus
ENSODEG00000002307	-	100	98.750	ENSPTIG00000019769	LSM6	100	98.750	Panthera_tigris_altaica
ENSODEG00000002307	-	100	98.750	ENSPTRG00000016488	LSM6	100	98.750	Pan_troglodytes
ENSODEG00000002307	-	100	98.750	ENSPANG00000006552	LSM6	100	98.750	Papio_anubis
ENSODEG00000002307	-	100	95.000	ENSPKIG00000016176	lsm6	100	95.000	Paramormyrops_kingsleyae
ENSODEG00000002307	-	100	98.750	ENSPSIG00000016942	LSM6	100	98.750	Pelodiscus_sinensis
ENSODEG00000002307	-	100	93.750	ENSPMGG00000018004	lsm6	100	93.750	Periophthalmus_magnuspinnatus
ENSODEG00000002307	-	100	98.750	ENSPEMG00000012410	Lsm6	100	98.750	Peromyscus_maniculatus_bairdii
ENSODEG00000002307	-	100	97.500	ENSPMAG00000006949	lsm6	100	97.500	Petromyzon_marinus
ENSODEG00000002307	-	100	98.750	ENSPCIG00000023469	LSM6	80	98.551	Phascolarctos_cinereus
ENSODEG00000002307	-	100	93.750	ENSPFOG00000008881	lsm6	100	93.750	Poecilia_formosa
ENSODEG00000002307	-	100	93.750	ENSPLAG00000003202	lsm6	100	93.750	Poecilia_latipinna
ENSODEG00000002307	-	100	93.750	ENSPMEG00000004000	lsm6	100	93.750	Poecilia_mexicana
ENSODEG00000002307	-	100	93.750	ENSPREG00000023235	lsm6	100	93.750	Poecilia_reticulata
ENSODEG00000002307	-	100	98.750	ENSPPYG00000015105	LSM6	100	98.750	Pongo_abelii
ENSODEG00000002307	-	100	98.750	ENSPCOG00000013899	LSM6	100	98.750	Propithecus_coquereli
ENSODEG00000002307	-	100	93.750	ENSPNYG00000012614	lsm6	100	93.750	Pundamilia_nyererei
ENSODEG00000002307	-	100	95.000	ENSPNAG00000018779	lsm6	100	95.000	Pygocentrus_nattereri
ENSODEG00000002307	-	100	98.750	ENSRNOG00000030374	Lsm6	100	98.750	Rattus_norvegicus
ENSODEG00000002307	-	100	98.750	ENSRNOG00000049370	LOC100360750	100	98.750	Rattus_norvegicus
ENSODEG00000002307	-	100	98.750	ENSRBIG00000027878	LSM6	100	98.750	Rhinopithecus_bieti
ENSODEG00000002307	-	100	98.750	ENSRROG00000024868	LSM6	100	98.750	Rhinopithecus_roxellana
ENSODEG00000002307	-	95	41.250	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSODEG00000002307	-	100	72.500	ENSSBOG00000028103	-	100	72.500	Saimiri_boliviensis_boliviensis
ENSODEG00000002307	-	100	98.750	ENSSBOG00000021229	-	100	98.750	Saimiri_boliviensis_boliviensis
ENSODEG00000002307	-	100	95.000	ENSSFOG00015016480	lsm6	100	95.000	Scleropages_formosus
ENSODEG00000002307	-	100	93.750	ENSSMAG00000004550	lsm6	100	93.750	Scophthalmus_maximus
ENSODEG00000002307	-	100	93.750	ENSSDUG00000020459	lsm6	50	93.750	Seriola_dumerili
ENSODEG00000002307	-	86	95.652	ENSSLDG00000004136	-	59	95.652	Seriola_lalandi_dorsalis
ENSODEG00000002307	-	100	93.750	ENSSLDG00000020533	lsm6	83	93.750	Seriola_lalandi_dorsalis
ENSODEG00000002307	-	60	97.917	ENSSARG00000000689	LSM6	100	97.917	Sorex_araneus
ENSODEG00000002307	-	100	98.750	ENSSPUG00000008657	LSM6	100	98.750	Sphenodon_punctatus
ENSODEG00000002307	-	100	93.750	ENSSPAG00000003246	lsm6	100	93.750	Stegastes_partitus
ENSODEG00000002307	-	100	98.750	ENSSSCG00000035973	LSM6	100	98.750	Sus_scrofa
ENSODEG00000002307	-	100	98.750	ENSTGUG00000002663	LSM6	100	98.750	Taeniopygia_guttata
ENSODEG00000002307	-	100	93.750	ENSTRUG00000023398	lsm6	100	93.750	Takifugu_rubripes
ENSODEG00000002307	-	100	93.750	ENSTNIG00000017725	lsm6	100	93.750	Tetraodon_nigroviridis
ENSODEG00000002307	-	100	98.750	ENSTTRG00000004609	LSM6	100	98.750	Tursiops_truncatus
ENSODEG00000002307	-	98	89.744	ENSUAMG00000014213	LSM6	64	89.744	Ursus_americanus
ENSODEG00000002307	-	98	89.744	ENSUMAG00000015727	LSM6	64	89.744	Ursus_maritimus
ENSODEG00000002307	-	100	98.750	ENSVPAG00000006922	LSM6	100	98.750	Vicugna_pacos
ENSODEG00000002307	-	100	98.750	ENSVVUG00000009254	LSM6	68	98.750	Vulpes_vulpes
ENSODEG00000002307	-	100	98.750	ENSXETG00000023683	lsm6	100	98.750	Xenopus_tropicalis
ENSODEG00000002307	-	100	93.750	ENSXMAG00000009606	lsm6	100	93.750	Xiphophorus_maculatus