EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000002419 (Gene tree)
Gene ID: 101561647
Gene Symbol: DDB1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 23181 bases
Position: chrJH651794.1:933710-956890
Accession: 101561647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000003152	CPSF_A	PF03178.15	4.2e-86	1	1
ENSODEP00000003153	CPSF_A	PF03178.15	1.8e-82	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000003218	DDB1-201	3572	XM_004646715	ENSODEP00000003152	1140 (aa)	XP_004646772	UPI000333B22F
ENSODET00000003219	DDB1-202	3429	-	ENSODEP00000003153	1142 (aa)	-	-

Gene Model

Click here to download ENSODEG00000002419's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000002419's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000002419	DDB1	100	99.035	ENSG00000167986	DDB1	100	100.000	Homo_sapiens
ENSODEG00000002419	DDB1	98	91.554	ENSAPOG00000005036	ddb1	99	91.531	Acanthochromis_polyacanthus
ENSODEG00000002419	DDB1	100	99.123	ENSAMEG00000016518	DDB1	100	99.123	Ailuropoda_melanoleuca
ENSODEG00000002419	DDB1	86	91.735	ENSACIG00000020624	ddb1	99	91.735	Amphilophus_citrinellus
ENSODEG00000002419	DDB1	100	91.228	ENSAOCG00000003066	ddb1	100	91.228	Amphiprion_ocellaris
ENSODEG00000002419	DDB1	100	91.316	ENSAPEG00000000092	ddb1	100	91.316	Amphiprion_percula
ENSODEG00000002419	DDB1	94	91.628	ENSATEG00000020571	ddb1	97	91.628	Anabas_testudineus
ENSODEG00000002419	DDB1	98	95.822	ENSAPLG00000007174	DDB1	99	95.822	Anas_platyrhynchos
ENSODEG00000002419	DDB1	100	96.491	ENSACAG00000017758	DDB1	100	96.491	Anolis_carolinensis
ENSODEG00000002419	DDB1	100	99.035	ENSANAG00000021878	DDB1	100	99.035	Aotus_nancymaae
ENSODEG00000002419	DDB1	100	91.491	ENSACLG00000012401	ddb1	100	91.491	Astatotilapia_calliptera
ENSODEG00000002419	DDB1	100	98.947	ENSBTAG00000021569	DDB1	93	98.947	Bos_taurus
ENSODEG00000002419	DDB1	100	37.126	WBGene00010890	ddb-1	100	36.860	Caenorhabditis_elegans
ENSODEG00000002419	DDB1	100	99.035	ENSCJAG00000019319	DDB1	100	99.035	Callithrix_jacchus
ENSODEG00000002419	DDB1	100	99.123	ENSCAFG00000016264	DDB1	100	99.123	Canis_familiaris
ENSODEG00000002419	DDB1	94	98.884	ENSCAFG00020012722	DDB1	99	98.884	Canis_lupus_dingo
ENSODEG00000002419	DDB1	100	98.947	ENSCHIG00000014969	DDB1	100	98.947	Capra_hircus
ENSODEG00000002419	DDB1	100	98.684	ENSTSYG00000008027	DDB1	100	98.684	Carlito_syrichta
ENSODEG00000002419	DDB1	98	99.464	ENSCAPG00000010786	DDB1	100	99.464	Cavia_aperea
ENSODEG00000002419	DDB1	100	99.474	ENSCPOG00000009956	DDB1	100	99.474	Cavia_porcellus
ENSODEG00000002419	DDB1	100	99.035	ENSCCAG00000035883	DDB1	100	99.035	Cebus_capucinus
ENSODEG00000002419	DDB1	100	96.528	ENSCATG00000044495	DDB1	100	96.528	Cercocebus_atys
ENSODEG00000002419	DDB1	100	99.649	ENSCLAG00000004126	DDB1	100	99.649	Chinchilla_lanigera
ENSODEG00000002419	DDB1	100	99.035	ENSCSAG00000006392	DDB1	100	99.035	Chlorocebus_sabaeus
ENSODEG00000002419	DDB1	88	92.045	ENSCHOG00000011377	DDB1	90	92.045	Choloepus_hoffmanni
ENSODEG00000002419	DDB1	100	97.105	ENSCPBG00000017728	DDB1	100	97.105	Chrysemys_picta_bellii
ENSODEG00000002419	DDB1	100	61.892	ENSCING00000007437	-	100	61.806	Ciona_intestinalis
ENSODEG00000002419	DDB1	94	60.369	ENSCSAVG00000004783	-	100	60.369	Ciona_savignyi
ENSODEG00000002419	DDB1	100	99.035	ENSCANG00000019948	DDB1	100	99.035	Colobus_angolensis_palliatus
ENSODEG00000002419	DDB1	100	99.211	ENSCGRG00001016599	Ddb1	100	99.211	Cricetulus_griseus_chok1gshd
ENSODEG00000002419	DDB1	100	99.211	ENSCGRG00000013427	Ddb1	100	99.211	Cricetulus_griseus_crigri
ENSODEG00000002419	DDB1	93	91.046	ENSCSEG00000012499	ddb1	99	89.474	Cynoglossus_semilaevis
ENSODEG00000002419	DDB1	94	91.333	ENSCVAG00000019531	ddb1	99	91.333	Cyprinodon_variegatus
ENSODEG00000002419	DDB1	100	88.266	ENSDARG00000074431	ddb1	100	88.266	Danio_rerio
ENSODEG00000002419	DDB1	94	98.791	ENSDNOG00000014884	DDB1	98	98.330	Dasypus_novemcinctus
ENSODEG00000002419	DDB1	84	99.548	ENSDORG00000000127	Ddb1	100	99.548	Dipodomys_ordii
ENSODEG00000002419	DDB1	100	60.786	FBgn0260962	pic	100	60.577	Drosophila_melanogaster
ENSODEG00000002419	DDB1	71	99.606	ENSETEG00000001053	-	71	99.606	Echinops_telfairi
ENSODEG00000002419	DDB1	78	84.814	ENSEBUG00000014593	ddb1	97	84.814	Eptatretus_burgeri
ENSODEG00000002419	DDB1	100	98.947	ENSEASG00005008184	DDB1	100	98.947	Equus_asinus_asinus
ENSODEG00000002419	DDB1	100	98.860	ENSECAG00000012136	DDB1	100	98.860	Equus_caballus
ENSODEG00000002419	DDB1	85	96.633	ENSEEUG00000003194	DDB1	85	96.633	Erinaceus_europaeus
ENSODEG00000002419	DDB1	100	91.228	ENSELUG00000023868	ddb1	100	91.228	Esox_lucius
ENSODEG00000002419	DDB1	100	99.123	ENSFCAG00000029716	DDB1	100	99.123	Felis_catus
ENSODEG00000002419	DDB1	100	96.150	ENSFALG00000011981	DDB1	100	96.150	Ficedula_albicollis
ENSODEG00000002419	DDB1	100	99.035	ENSFDAG00000005128	DDB1	100	99.035	Fukomys_damarensis
ENSODEG00000002419	DDB1	90	90.980	ENSFHEG00000022133	ddb1	98	90.980	Fundulus_heteroclitus
ENSODEG00000002419	DDB1	79	94.314	ENSGMOG00000019386	ddb1	94	94.314	Gadus_morhua
ENSODEG00000002419	DDB1	100	96.404	ENSGALG00000042333	DDB1	100	96.404	Gallus_gallus
ENSODEG00000002419	DDB1	94	91.333	ENSGAFG00000013142	ddb1	99	91.333	Gambusia_affinis
ENSODEG00000002419	DDB1	96	90.467	ENSGACG00000017182	ddb1	100	90.467	Gasterosteus_aculeatus
ENSODEG00000002419	DDB1	95	96.956	ENSGAGG00000014124	DDB1	100	96.956	Gopherus_agassizii
ENSODEG00000002419	DDB1	100	99.035	ENSGGOG00000004052	DDB1	100	99.035	Gorilla_gorilla
ENSODEG00000002419	DDB1	100	91.491	ENSHBUG00000008873	ddb1	100	91.491	Haplochromis_burtoni
ENSODEG00000002419	DDB1	100	98.947	ENSHGLG00000018430	DDB1	100	98.947	Heterocephalus_glaber_female
ENSODEG00000002419	DDB1	100	97.895	ENSHGLG00100014475	DDB1	100	97.895	Heterocephalus_glaber_male
ENSODEG00000002419	DDB1	94	90.892	ENSHCOG00000018670	ddb1	99	90.463	Hippocampus_comes
ENSODEG00000002419	DDB1	100	90.526	ENSIPUG00000005612	DDB1	100	90.526	Ictalurus_punctatus
ENSODEG00000002419	DDB1	100	99.035	ENSSTOG00000007552	DDB1	100	99.035	Ictidomys_tridecemlineatus
ENSODEG00000002419	DDB1	100	98.860	ENSJJAG00000017769	Ddb1	100	98.860	Jaculus_jaculus
ENSODEG00000002419	DDB1	94	91.240	ENSKMAG00000002315	ddb1	99	91.240	Kryptolebias_marmoratus
ENSODEG00000002419	DDB1	85	91.606	ENSLBEG00000017065	ddb1	99	91.606	Labrus_bergylta
ENSODEG00000002419	DDB1	100	93.170	ENSLACG00000017611	DDB1	100	93.170	Latimeria_chalumnae
ENSODEG00000002419	DDB1	92	83.333	ENSLOCG00000000012	ddb1	100	83.333	Lepisosteus_oculatus
ENSODEG00000002419	DDB1	100	98.860	ENSLAFG00000011513	DDB1	100	98.860	Loxodonta_africana
ENSODEG00000002419	DDB1	100	99.035	ENSMFAG00000042035	DDB1	100	99.035	Macaca_fascicularis
ENSODEG00000002419	DDB1	99	99.027	ENSMMUG00000002691	DDB1	99	99.027	Macaca_mulatta
ENSODEG00000002419	DDB1	100	99.035	ENSMNEG00000031559	DDB1	100	99.035	Macaca_nemestrina
ENSODEG00000002419	DDB1	100	99.035	ENSMLEG00000044136	DDB1	100	99.035	Mandrillus_leucophaeus
ENSODEG00000002419	DDB1	100	91.491	ENSMAMG00000014372	ddb1	100	91.491	Mastacembelus_armatus
ENSODEG00000002419	DDB1	100	91.404	ENSMZEG00005013835	ddb1	100	91.404	Maylandia_zebra
ENSODEG00000002419	DDB1	94	95.717	ENSMGAG00000004990	DDB1	100	95.717	Meleagris_gallopavo
ENSODEG00000002419	DDB1	100	99.211	ENSMAUG00000012926	Ddb1	100	99.211	Mesocricetus_auratus
ENSODEG00000002419	DDB1	100	99.035	ENSMICG00000013703	DDB1	100	99.035	Microcebus_murinus
ENSODEG00000002419	DDB1	100	98.947	ENSMOCG00000020499	Ddb1	100	98.947	Microtus_ochrogaster
ENSODEG00000002419	DDB1	86	91.735	ENSMMOG00000001758	ddb1	99	91.735	Mola_mola
ENSODEG00000002419	DDB1	100	88.495	ENSMODG00000020353	DDB1	100	88.495	Monodelphis_domestica
ENSODEG00000002419	DDB1	100	91.491	ENSMALG00000014071	ddb1	100	91.491	Monopterus_albus
ENSODEG00000002419	DDB1	100	99.123	MGP_CAROLIEiJ_G0022695	Ddb1	100	99.123	Mus_caroli
ENSODEG00000002419	DDB1	100	98.947	ENSMUSG00000024740	Ddb1	100	98.947	Mus_musculus
ENSODEG00000002419	DDB1	100	99.123	MGP_PahariEiJ_G0014189	Ddb1	100	99.123	Mus_pahari
ENSODEG00000002419	DDB1	100	99.035	MGP_SPRETEiJ_G0023609	Ddb1	100	99.035	Mus_spretus
ENSODEG00000002419	DDB1	100	95.789	ENSMPUG00000014200	DDB1	100	95.789	Mustela_putorius_furo
ENSODEG00000002419	DDB1	100	98.596	ENSMLUG00000013232	DDB1	100	98.596	Myotis_lucifugus
ENSODEG00000002419	DDB1	100	98.772	ENSNGAG00000009384	Ddb1	100	98.772	Nannospalax_galili
ENSODEG00000002419	DDB1	100	91.579	ENSNBRG00000019581	ddb1	100	91.579	Neolamprologus_brichardi
ENSODEG00000002419	DDB1	100	95.920	ENSNLEG00000002022	DDB1	100	95.920	Nomascus_leucogenys
ENSODEG00000002419	DDB1	90	99.296	ENSMEUG00000001099	DDB1	92	99.296	Notamacropus_eugenii
ENSODEG00000002419	DDB1	90	90.495	ENSOPRG00000008254	DDB1	90	90.495	Ochotona_princeps
ENSODEG00000002419	DDB1	100	91.491	ENSONIG00000005804	ddb1	100	91.491	Oreochromis_niloticus
ENSODEG00000002419	DDB1	91	97.287	ENSOANG00000004897	DDB1	100	97.287	Ornithorhynchus_anatinus
ENSODEG00000002419	DDB1	100	99.035	ENSOCUG00000001667	DDB1	100	99.035	Oryctolagus_cuniculus
ENSODEG00000002419	DDB1	96	89.734	ENSORLG00000001399	ddb1	98	90.970	Oryzias_latipes
ENSODEG00000002419	DDB1	96	89.643	ENSORLG00020001277	ddb1	97	89.643	Oryzias_latipes_hni
ENSODEG00000002419	DDB1	94	90.791	ENSORLG00015002080	ddb1	99	90.791	Oryzias_latipes_hsok
ENSODEG00000002419	DDB1	96	89.608	ENSOMEG00000006181	ddb1	99	89.608	Oryzias_melastigma
ENSODEG00000002419	DDB1	100	98.860	ENSOGAG00000016103	DDB1	100	98.860	Otolemur_garnettii
ENSODEG00000002419	DDB1	99	98.931	ENSOARG00000011716	DDB1	98	98.931	Ovis_aries
ENSODEG00000002419	DDB1	100	99.035	ENSPPAG00000035343	DDB1	100	99.035	Pan_paniscus
ENSODEG00000002419	DDB1	100	99.123	ENSPPRG00000013300	DDB1	100	99.123	Panthera_pardus
ENSODEG00000002419	DDB1	98	99.106	ENSPTIG00000006909	DDB1	98	99.106	Panthera_tigris_altaica
ENSODEG00000002419	DDB1	100	99.035	ENSPTRG00000003737	DDB1	100	99.035	Pan_troglodytes
ENSODEG00000002419	DDB1	100	99.035	ENSPANG00000000242	DDB1	100	99.035	Papio_anubis
ENSODEG00000002419	DDB1	94	91.240	ENSPKIG00000019213	ddb1	94	91.240	Paramormyrops_kingsleyae
ENSODEG00000002419	DDB1	98	96.263	ENSPSIG00000013275	DDB1	100	96.263	Pelodiscus_sinensis
ENSODEG00000002419	DDB1	86	91.224	ENSPMGG00000021179	ddb1	99	91.224	Periophthalmus_magnuspinnatus
ENSODEG00000002419	DDB1	100	99.211	ENSPEMG00000012241	Ddb1	100	99.211	Peromyscus_maniculatus_bairdii
ENSODEG00000002419	DDB1	89	87.033	ENSPMAG00000008479	ddb1	100	87.033	Petromyzon_marinus
ENSODEG00000002419	DDB1	100	98.509	ENSPCIG00000002643	DDB1	100	98.509	Phascolarctos_cinereus
ENSODEG00000002419	DDB1	100	90.885	ENSPFOG00000002768	ddb1	100	90.885	Poecilia_formosa
ENSODEG00000002419	DDB1	100	90.702	ENSPLAG00000017227	ddb1	100	90.702	Poecilia_latipinna
ENSODEG00000002419	DDB1	100	90.702	ENSPMEG00000011398	ddb1	100	90.702	Poecilia_mexicana
ENSODEG00000002419	DDB1	94	91.256	ENSPREG00000004440	ddb1	98	91.256	Poecilia_reticulata
ENSODEG00000002419	DDB1	100	94.241	ENSPPYG00000003193	DDB1	100	94.241	Pongo_abelii
ENSODEG00000002419	DDB1	85	98.806	ENSPCAG00000011040	DDB1	85	98.806	Procavia_capensis
ENSODEG00000002419	DDB1	100	97.461	ENSPCOG00000015176	DDB1	100	97.461	Propithecus_coquereli
ENSODEG00000002419	DDB1	100	98.947	ENSPVAG00000003847	DDB1	100	98.947	Pteropus_vampyrus
ENSODEG00000002419	DDB1	94	91.053	ENSPNAG00000006635	ddb1	97	91.053	Pygocentrus_nattereri
ENSODEG00000002419	DDB1	100	99.123	ENSRNOG00000020715	Ddb1	100	99.123	Rattus_norvegicus
ENSODEG00000002419	DDB1	100	99.035	ENSRBIG00000033611	DDB1	100	99.035	Rhinopithecus_bieti
ENSODEG00000002419	DDB1	100	99.035	ENSRROG00000041407	DDB1	100	99.035	Rhinopithecus_roxellana
ENSODEG00000002419	DDB1	100	98.947	ENSSBOG00000019775	DDB1	100	98.947	Saimiri_boliviensis_boliviensis
ENSODEG00000002419	DDB1	94	96.262	ENSSHAG00000011600	DDB1	100	96.262	Sarcophilus_harrisii
ENSODEG00000002419	DDB1	94	91.357	ENSSFOG00015011151	ddb1	97	91.357	Scleropages_formosus
ENSODEG00000002419	DDB1	100	90.965	ENSSMAG00000009495	ddb1	100	90.965	Scophthalmus_maximus
ENSODEG00000002419	DDB1	100	91.316	ENSSDUG00000004642	ddb1	100	91.316	Seriola_dumerili
ENSODEG00000002419	DDB1	100	91.316	ENSSLDG00000015804	ddb1	100	91.316	Seriola_lalandi_dorsalis
ENSODEG00000002419	DDB1	70	100.000	ENSSARG00000003290	-	72	100.000	Sorex_araneus
ENSODEG00000002419	DDB1	100	97.193	ENSSPUG00000019338	DDB1	100	97.193	Sphenodon_punctatus
ENSODEG00000002419	DDB1	94	91.442	ENSSPAG00000009888	ddb1	99	91.442	Stegastes_partitus
ENSODEG00000002419	DDB1	100	98.070	ENSSSCG00000013094	DDB1	100	98.070	Sus_scrofa
ENSODEG00000002419	DDB1	100	96.316	ENSTGUG00000006414	DDB1	100	96.316	Taeniopygia_guttata
ENSODEG00000002419	DDB1	94	90.214	ENSTRUG00000016682	ddb1	99	89.777	Takifugu_rubripes
ENSODEG00000002419	DDB1	88	85.030	ENSTNIG00000009565	ddb1	99	85.030	Tetraodon_nigroviridis
ENSODEG00000002419	DDB1	92	94.256	ENSTTRG00000011055	DDB1	94	94.256	Tursiops_truncatus
ENSODEG00000002419	DDB1	94	98.884	ENSUAMG00000017793	DDB1	93	98.884	Ursus_americanus
ENSODEG00000002419	DDB1	94	98.884	ENSUMAG00000011788	DDB1	98	98.884	Ursus_maritimus
ENSODEG00000002419	DDB1	90	99.020	ENSVPAG00000007963	DDB1	92	99.020	Vicugna_pacos
ENSODEG00000002419	DDB1	100	99.035	ENSVVUG00000004987	DDB1	100	99.035	Vulpes_vulpes
ENSODEG00000002419	DDB1	100	93.182	ENSXETG00000008820	ddb1	100	93.182	Xenopus_tropicalis
ENSODEG00000002419	DDB1	86	91.224	ENSXCOG00000013956	ddb1	99	91.224	Xiphophorus_couchianus
ENSODEG00000002419	DDB1	94	91.146	ENSXMAG00000000022	ddb1	99	91.146	Xiphophorus_maculatus