EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000002571 (Gene tree)
Gene ID: 101585418
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 24560 bases
Position: chrJH651745.1:2961924-2986483
Accession: 101585418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000003338	PRP21_like_P	PF12230.8	7.9e-52	1	1
ENSODEP00000003338	Surp	PF01805.20	6.2e-46	1	2
ENSODEP00000003338	Surp	PF01805.20	6.2e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000003409	SF3A1-201	2663	XM_004645535	ENSODEP00000003338	792 (aa)	XP_004645592	UPI000333C103

Gene Model

Click here to download ENSODEG00000002571's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000002571's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000002571	SF3A1	100	98.865	ENSG00000099995	SF3A1	100	98.865	Homo_sapiens
ENSODEG00000002571	SF3A1	100	83.375	ENSAPOG00000020465	sf3a1	99	85.419	Acanthochromis_polyacanthus
ENSODEG00000002571	SF3A1	100	98.239	ENSAMEG00000007737	SF3A1	100	98.239	Ailuropoda_melanoleuca
ENSODEG00000002571	SF3A1	100	84.257	ENSACIG00000020672	sf3a1	98	85.696	Amphilophus_citrinellus
ENSODEG00000002571	SF3A1	100	83.123	ENSAOCG00000003060	sf3a1	99	85.419	Amphiprion_ocellaris
ENSODEG00000002571	SF3A1	100	83.249	ENSAPEG00000010735	sf3a1	99	85.548	Amphiprion_percula
ENSODEG00000002571	SF3A1	97	85.938	ENSATEG00000021201	sf3a1	97	85.530	Anabas_testudineus
ENSODEG00000002571	SF3A1	95	94.055	ENSAPLG00000009057	SF3A1	99	93.506	Anas_platyrhynchos
ENSODEG00000002571	SF3A1	100	86.190	ENSACAG00000009415	SF3A1	100	87.423	Anolis_carolinensis
ENSODEG00000002571	SF3A1	100	98.739	ENSANAG00000032045	SF3A1	100	98.739	Aotus_nancymaae
ENSODEG00000002571	SF3A1	100	84.363	ENSACLG00000012622	sf3a1	98	86.068	Astatotilapia_calliptera
ENSODEG00000002571	SF3A1	99	83.565	ENSAMXG00000005382	sf3a1	99	84.447	Astyanax_mexicanus
ENSODEG00000002571	SF3A1	100	98.865	ENSBTAG00000003390	SF3A1	100	98.865	Bos_taurus
ENSODEG00000002571	SF3A1	84	42.986	WBGene00004188	prp-21	94	43.038	Caenorhabditis_elegans
ENSODEG00000002571	SF3A1	100	98.865	ENSCJAG00000010370	SF3A1	100	98.865	Callithrix_jacchus
ENSODEG00000002571	SF3A1	100	98.613	ENSCAFG00000012559	SF3A1	100	98.613	Canis_familiaris
ENSODEG00000002571	SF3A1	100	98.613	ENSCAFG00020000838	SF3A1	100	98.613	Canis_lupus_dingo
ENSODEG00000002571	SF3A1	100	98.739	ENSCHIG00000018642	SF3A1	100	98.739	Capra_hircus
ENSODEG00000002571	SF3A1	100	98.991	ENSTSYG00000004739	SF3A1	100	98.991	Carlito_syrichta
ENSODEG00000002571	SF3A1	94	81.442	ENSCAPG00000015414	SF3A1	98	81.442	Cavia_aperea
ENSODEG00000002571	SF3A1	100	99.117	ENSCPOG00000014589	SF3A1	100	99.117	Cavia_porcellus
ENSODEG00000002571	SF3A1	100	98.739	ENSCCAG00000032006	SF3A1	100	98.739	Cebus_capucinus
ENSODEG00000002571	SF3A1	100	99.117	ENSCATG00000029241	SF3A1	100	99.117	Cercocebus_atys
ENSODEG00000002571	SF3A1	100	98.991	ENSCLAG00000006508	SF3A1	100	98.991	Chinchilla_lanigera
ENSODEG00000002571	SF3A1	100	98.991	ENSCSAG00000009470	SF3A1	100	98.991	Chlorocebus_sabaeus
ENSODEG00000002571	SF3A1	61	100.000	ENSCHOG00000005201	SF3A1	69	100.000	Choloepus_hoffmanni
ENSODEG00000002571	SF3A1	100	91.173	ENSCPBG00000007595	SF3A1	100	91.299	Chrysemys_picta_bellii
ENSODEG00000002571	SF3A1	94	52.381	ENSCING00000008526	-	67	57.795	Ciona_intestinalis
ENSODEG00000002571	SF3A1	96	51.613	ENSCSAVG00000005608	-	92	63.559	Ciona_savignyi
ENSODEG00000002571	SF3A1	100	98.991	ENSCANG00000033564	SF3A1	100	98.991	Colobus_angolensis_palliatus
ENSODEG00000002571	SF3A1	100	98.613	ENSCGRG00001008933	Sf3a1	100	98.613	Cricetulus_griseus_chok1gshd
ENSODEG00000002571	SF3A1	100	98.613	ENSCGRG00000006127	Sf3a1	100	98.613	Cricetulus_griseus_crigri
ENSODEG00000002571	SF3A1	100	81.761	ENSCSEG00000010792	sf3a1	98	83.095	Cynoglossus_semilaevis
ENSODEG00000002571	SF3A1	100	82.746	ENSCVAG00000004560	sf3a1	98	84.005	Cyprinodon_variegatus
ENSODEG00000002571	SF3A1	100	82.390	ENSDARG00000041887	sf3a1	98	84.545	Danio_rerio
ENSODEG00000002571	SF3A1	100	98.616	ENSDNOG00000010629	SF3A1	100	98.616	Dasypus_novemcinctus
ENSODEG00000002571	SF3A1	100	98.739	ENSDORG00000005613	Sf3a1	100	98.739	Dipodomys_ordii
ENSODEG00000002571	SF3A1	79	61.869	FBgn0266917	Sf3a1	83	61.070	Drosophila_melanogaster
ENSODEG00000002571	SF3A1	89	95.869	ENSETEG00000017194	SF3A1	100	95.869	Echinops_telfairi
ENSODEG00000002571	SF3A1	98	66.425	ENSEBUG00000001285	sf3a1	95	67.537	Eptatretus_burgeri
ENSODEG00000002571	SF3A1	100	99.117	ENSEASG00005010254	SF3A1	100	99.117	Equus_asinus_asinus
ENSODEG00000002571	SF3A1	100	99.117	ENSECAG00000023962	SF3A1	100	99.117	Equus_caballus
ENSODEG00000002571	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSODEG00000002571	SF3A1	100	82.309	ENSELUG00000022578	sf3a1	97	83.333	Esox_lucius
ENSODEG00000002571	SF3A1	100	98.739	ENSFCAG00000011932	SF3A1	100	98.739	Felis_catus
ENSODEG00000002571	SF3A1	95	92.989	ENSFALG00000006944	SF3A1	100	91.803	Ficedula_albicollis
ENSODEG00000002571	SF3A1	100	99.369	ENSFDAG00000009560	SF3A1	100	99.369	Fukomys_damarensis
ENSODEG00000002571	SF3A1	100	84.257	ENSFHEG00000010866	sf3a1	98	85.084	Fundulus_heteroclitus
ENSODEG00000002571	SF3A1	100	81.211	ENSGMOG00000016024	sf3a1	97	81.323	Gadus_morhua
ENSODEG00000002571	SF3A1	95	94.048	ENSGALG00000007937	SF3A1	100	92.308	Gallus_gallus
ENSODEG00000002571	SF3A1	100	83.501	ENSGAFG00000009111	sf3a1	97	84.706	Gambusia_affinis
ENSODEG00000002571	SF3A1	100	82.346	ENSGACG00000011893	sf3a1	97	83.203	Gasterosteus_aculeatus
ENSODEG00000002571	SF3A1	96	91.184	ENSGAGG00000000762	SF3A1	99	91.316	Gopherus_agassizii
ENSODEG00000002571	SF3A1	100	98.865	ENSGGOG00000012631	SF3A1	100	98.865	Gorilla_gorilla
ENSODEG00000002571	SF3A1	100	84.363	ENSHBUG00000015795	sf3a1	98	86.068	Haplochromis_burtoni
ENSODEG00000002571	SF3A1	100	99.243	ENSHGLG00000007907	SF3A1	100	99.243	Heterocephalus_glaber_female
ENSODEG00000002571	SF3A1	100	99.243	ENSHGLG00100013799	SF3A1	100	99.243	Heterocephalus_glaber_male
ENSODEG00000002571	SF3A1	100	80.227	ENSHCOG00000015423	sf3a1	98	81.356	Hippocampus_comes
ENSODEG00000002571	SF3A1	97	82.041	ENSIPUG00000002470	sf3a1	99	82.300	Ictalurus_punctatus
ENSODEG00000002571	SF3A1	100	98.865	ENSSTOG00000013892	SF3A1	100	98.865	Ictidomys_tridecemlineatus
ENSODEG00000002571	SF3A1	100	98.741	ENSJJAG00000022566	Sf3a1	100	98.741	Jaculus_jaculus
ENSODEG00000002571	SF3A1	100	82.872	ENSKMAG00000002400	sf3a1	98	84.436	Kryptolebias_marmoratus
ENSODEG00000002571	SF3A1	100	82.620	ENSLBEG00000022974	sf3a1	98	83.615	Labrus_bergylta
ENSODEG00000002571	SF3A1	100	87.186	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSODEG00000002571	SF3A1	100	84.693	ENSLOCG00000008251	sf3a1	97	86.528	Lepisosteus_oculatus
ENSODEG00000002571	SF3A1	97	62.468	ENSLAFG00000026032	-	97	62.082	Loxodonta_africana
ENSODEG00000002571	SF3A1	100	98.487	ENSLAFG00000000448	SF3A1	100	98.487	Loxodonta_africana
ENSODEG00000002571	SF3A1	100	98.865	ENSMFAG00000031979	SF3A1	100	98.865	Macaca_fascicularis
ENSODEG00000002571	SF3A1	100	98.865	ENSMMUG00000005547	SF3A1	100	98.865	Macaca_mulatta
ENSODEG00000002571	SF3A1	100	98.739	ENSMNEG00000037229	SF3A1	100	98.739	Macaca_nemestrina
ENSODEG00000002571	SF3A1	100	98.991	ENSMLEG00000041908	SF3A1	100	98.991	Mandrillus_leucophaeus
ENSODEG00000002571	SF3A1	97	85.992	ENSMAMG00000006460	sf3a1	96	86.122	Mastacembelus_armatus
ENSODEG00000002571	SF3A1	100	84.363	ENSMZEG00005009633	sf3a1	98	86.068	Maylandia_zebra
ENSODEG00000002571	SF3A1	95	94.048	ENSMGAG00000001330	SF3A1	99	93.498	Meleagris_gallopavo
ENSODEG00000002571	SF3A1	92	95.082	ENSMAUG00000020317	Sf3a1	94	95.082	Mesocricetus_auratus
ENSODEG00000002571	SF3A1	100	98.865	ENSMICG00000010038	SF3A1	100	98.865	Microcebus_murinus
ENSODEG00000002571	SF3A1	100	98.487	ENSMOCG00000008438	Sf3a1	100	98.487	Microtus_ochrogaster
ENSODEG00000002571	SF3A1	100	81.738	ENSMMOG00000015588	sf3a1	98	82.705	Mola_mola
ENSODEG00000002571	SF3A1	100	97.601	ENSMODG00000009270	SF3A1	100	97.601	Monodelphis_domestica
ENSODEG00000002571	SF3A1	100	84.363	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSODEG00000002571	SF3A1	100	98.235	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.235	Mus_caroli
ENSODEG00000002571	SF3A1	100	98.235	ENSMUSG00000002129	Sf3a1	100	98.235	Mus_musculus
ENSODEG00000002571	SF3A1	100	98.108	MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	Mus_pahari
ENSODEG00000002571	SF3A1	100	98.235	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.235	Mus_spretus
ENSODEG00000002571	SF3A1	100	98.613	ENSMPUG00000013144	SF3A1	100	98.613	Mustela_putorius_furo
ENSODEG00000002571	SF3A1	100	98.865	ENSMLUG00000002139	SF3A1	100	98.865	Myotis_lucifugus
ENSODEG00000002571	SF3A1	100	98.613	ENSNGAG00000016977	Sf3a1	100	98.613	Nannospalax_galili
ENSODEG00000002571	SF3A1	100	84.363	ENSNBRG00000016642	sf3a1	96	86.825	Neolamprologus_brichardi
ENSODEG00000002571	SF3A1	100	98.991	ENSNLEG00000003686	SF3A1	100	98.991	Nomascus_leucogenys
ENSODEG00000002571	SF3A1	96	87.879	ENSMEUG00000008741	SF3A1	100	87.879	Notamacropus_eugenii
ENSODEG00000002571	SF3A1	100	98.487	ENSOPRG00000016636	SF3A1	100	98.487	Ochotona_princeps
ENSODEG00000002571	SF3A1	100	84.383	ENSONIG00000010848	sf3a1	98	85.436	Oreochromis_niloticus
ENSODEG00000002571	SF3A1	100	98.613	ENSOCUG00000007633	SF3A1	100	98.613	Oryctolagus_cuniculus
ENSODEG00000002571	SF3A1	96	81.997	ENSORLG00000013050	sf3a1	98	83.962	Oryzias_latipes
ENSODEG00000002571	SF3A1	99	80.482	ENSORLG00020003236	sf3a1	96	82.199	Oryzias_latipes_hni
ENSODEG00000002571	SF3A1	100	82.242	ENSORLG00015017411	sf3a1	99	83.871	Oryzias_latipes_hsok
ENSODEG00000002571	SF3A1	100	82.620	ENSOMEG00000013362	sf3a1	98	83.875	Oryzias_melastigma
ENSODEG00000002571	SF3A1	100	98.739	ENSOGAG00000012931	SF3A1	100	98.739	Otolemur_garnettii
ENSODEG00000002571	SF3A1	100	96.974	ENSOARG00000006849	SF3A1	100	96.974	Ovis_aries
ENSODEG00000002571	SF3A1	100	97.856	ENSPPAG00000041790	SF3A1	100	97.856	Pan_paniscus
ENSODEG00000002571	SF3A1	100	98.739	ENSPPRG00000004391	SF3A1	100	98.739	Panthera_pardus
ENSODEG00000002571	SF3A1	97	98.834	ENSPTIG00000000844	SF3A1	100	98.834	Panthera_tigris_altaica
ENSODEG00000002571	SF3A1	100	98.865	ENSPTRG00000014240	SF3A1	100	98.865	Pan_troglodytes
ENSODEG00000002571	SF3A1	100	98.991	ENSPANG00000020772	SF3A1	100	98.991	Papio_anubis
ENSODEG00000002571	SF3A1	83	93.407	ENSPSIG00000012803	SF3A1	96	94.329	Pelodiscus_sinensis
ENSODEG00000002571	SF3A1	96	84.555	ENSPMGG00000023096	sf3a1	100	84.293	Periophthalmus_magnuspinnatus
ENSODEG00000002571	SF3A1	100	98.613	ENSPEMG00000009494	Sf3a1	100	98.613	Peromyscus_maniculatus_bairdii
ENSODEG00000002571	SF3A1	69	77.858	ENSPMAG00000007139	-	89	79.886	Petromyzon_marinus
ENSODEG00000002571	SF3A1	100	97.475	ENSPCIG00000022692	SF3A1	100	97.475	Phascolarctos_cinereus
ENSODEG00000002571	SF3A1	100	74.969	ENSPFOG00000016768	sf3a1	93	78.776	Poecilia_formosa
ENSODEG00000002571	SF3A1	100	83.501	ENSPLAG00000017268	sf3a1	97	84.967	Poecilia_latipinna
ENSODEG00000002571	SF3A1	96	85.843	ENSPMEG00000019811	sf3a1	98	85.090	Poecilia_mexicana
ENSODEG00000002571	SF3A1	100	83.627	ENSPREG00000010347	sf3a1	97	85.490	Poecilia_reticulata
ENSODEG00000002571	SF3A1	100	98.991	ENSPPYG00000011707	SF3A1	100	98.991	Pongo_abelii
ENSODEG00000002571	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSODEG00000002571	SF3A1	100	98.865	ENSPCOG00000026630	SF3A1	100	98.865	Propithecus_coquereli
ENSODEG00000002571	SF3A1	100	94.451	ENSPVAG00000017719	SF3A1	94	97.987	Pteropus_vampyrus
ENSODEG00000002571	SF3A1	100	84.363	ENSPNYG00000018706	sf3a1	98	86.068	Pundamilia_nyererei
ENSODEG00000002571	SF3A1	98	84.204	ENSPNAG00000003721	sf3a1	99	84.556	Pygocentrus_nattereri
ENSODEG00000002571	SF3A1	100	98.613	ENSRNOG00000005218	Sf3a1	100	98.613	Rattus_norvegicus
ENSODEG00000002571	SF3A1	100	99.117	ENSRBIG00000032167	SF3A1	100	99.117	Rhinopithecus_bieti
ENSODEG00000002571	SF3A1	100	99.117	ENSRROG00000044908	SF3A1	100	99.117	Rhinopithecus_roxellana
ENSODEG00000002571	SF3A1	93	98.909	ENSSBOG00000021960	SF3A1	100	99.114	Saimiri_boliviensis_boliviensis
ENSODEG00000002571	SF3A1	97	95.078	ENSSHAG00000003666	SF3A1	98	95.078	Sarcophilus_harrisii
ENSODEG00000002571	SF3A1	100	83.459	ENSSFOG00015004579	sf3a1	97	86.086	Scleropages_formosus
ENSODEG00000002571	SF3A1	100	81.612	ENSSMAG00000004275	sf3a1	98	82.575	Scophthalmus_maximus
ENSODEG00000002571	SF3A1	100	83.879	ENSSDUG00000022219	sf3a1	98	85.176	Seriola_dumerili
ENSODEG00000002571	SF3A1	100	83.879	ENSSLDG00000012642	sf3a1	98	85.176	Seriola_lalandi_dorsalis
ENSODEG00000002571	SF3A1	97	95.596	ENSSARG00000005960	SF3A1	100	95.596	Sorex_araneus
ENSODEG00000002571	SF3A1	96	92.358	ENSSPUG00000018863	SF3A1	100	92.030	Sphenodon_punctatus
ENSODEG00000002571	SF3A1	100	84.635	ENSSPAG00000011856	sf3a1	99	85.419	Stegastes_partitus
ENSODEG00000002571	SF3A1	100	98.739	ENSSSCG00000010002	SF3A1	100	98.739	Sus_scrofa
ENSODEG00000002571	SF3A1	95	93.931	ENSTGUG00000010547	SF3A1	99	93.515	Taeniopygia_guttata
ENSODEG00000002571	SF3A1	100	81.360	ENSTRUG00000006118	sf3a1	99	81.395	Takifugu_rubripes
ENSODEG00000002571	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSODEG00000002571	SF3A1	100	91.551	ENSTBEG00000012771	SF3A1	100	91.551	Tupaia_belangeri
ENSODEG00000002571	SF3A1	100	98.489	ENSTTRG00000001535	SF3A1	100	98.489	Tursiops_truncatus
ENSODEG00000002571	SF3A1	99	97.840	ENSUAMG00000006750	SF3A1	99	97.840	Ursus_americanus
ENSODEG00000002571	SF3A1	99	97.959	ENSUMAG00000016665	SF3A1	99	97.959	Ursus_maritimus
ENSODEG00000002571	SF3A1	100	98.613	ENSVVUG00000003075	SF3A1	100	98.613	Vulpes_vulpes
ENSODEG00000002571	SF3A1	100	85.571	ENSXETG00000016144	sf3a1	100	85.320	Xenopus_tropicalis
ENSODEG00000002571	SF3A1	100	83.249	ENSXCOG00000015653	sf3a1	97	84.444	Xiphophorus_couchianus
ENSODEG00000002571	SF3A1	100	83.375	ENSXMAG00000002753	sf3a1	97	84.575	Xiphophorus_maculatus