EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000002587 (Gene tree)
Gene ID: 101589511
Gene Symbol: URB1
Alias: C21orf108|KIAA0539|NPA1
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 65608 bases
Position: chrJH651740.1:1876574-1942181
Accession: 101589511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000003367	Npa1	PF11707.8	5.2e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000003438	URB1-201	6804	XM_004645358	ENSODEP00000003367	2267 (aa)	XP_004645415	-

Gene Model

Click here to download ENSODEG00000002587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000002587's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000002587	URB1	99	79.700	ENSG00000142207	URB1	100	79.648	Homo_sapiens
ENSODEG00000002587	URB1	95	47.915	ENSAPOG00000020308	urb1	98	47.994	Acanthochromis_polyacanthus
ENSODEG00000002587	URB1	99	76.879	ENSAMEG00000011998	URB1	99	76.967	Ailuropoda_melanoleuca
ENSODEG00000002587	URB1	95	43.871	ENSACIG00000003248	urb1	96	43.594	Amphilophus_citrinellus
ENSODEG00000002587	URB1	99	40.913	ENSAOCG00000010364	urb1	99	40.957	Amphiprion_ocellaris
ENSODEG00000002587	URB1	96	53.198	ENSAPEG00000010758	urb1	99	53.198	Amphiprion_percula
ENSODEG00000002587	URB1	98	44.166	ENSATEG00000011790	urb1	97	44.278	Anabas_testudineus
ENSODEG00000002587	URB1	97	55.356	ENSAPLG00000012791	URB1	100	55.536	Anas_platyrhynchos
ENSODEG00000002587	URB1	98	52.476	ENSACAG00000002817	URB1	99	52.233	Anolis_carolinensis
ENSODEG00000002587	URB1	99	78.866	ENSANAG00000024617	URB1	100	78.866	Aotus_nancymaae
ENSODEG00000002587	URB1	98	44.312	ENSACLG00000024865	urb1	99	44.031	Astatotilapia_calliptera
ENSODEG00000002587	URB1	99	39.860	ENSAMXG00000012306	urb1	99	39.947	Astyanax_mexicanus
ENSODEG00000002587	URB1	99	74.266	ENSBTAG00000012412	URB1	99	74.310	Bos_taurus
ENSODEG00000002587	URB1	99	78.894	ENSCJAG00000009118	URB1	100	78.894	Callithrix_jacchus
ENSODEG00000002587	URB1	99	76.556	ENSCAFG00000008892	URB1	100	76.556	Canis_familiaris
ENSODEG00000002587	URB1	99	76.484	ENSCAFG00020025987	-	100	76.484	Canis_lupus_dingo
ENSODEG00000002587	URB1	99	75.385	ENSCAFG00020025994	-	100	75.385	Canis_lupus_dingo
ENSODEG00000002587	URB1	99	74.134	ENSCHIG00000015645	URB1	99	74.222	Capra_hircus
ENSODEG00000002587	URB1	99	78.716	ENSTSYG00000013286	URB1	99	78.716	Carlito_syrichta
ENSODEG00000002587	URB1	98	83.798	ENSCAPG00000015589	URB1	99	83.798	Cavia_aperea
ENSODEG00000002587	URB1	99	85.022	ENSCPOG00000006748	URB1	99	85.022	Cavia_porcellus
ENSODEG00000002587	URB1	99	79.121	ENSCCAG00000021299	URB1	100	79.121	Cebus_capucinus
ENSODEG00000002587	URB1	99	79.604	ENSCATG00000042630	URB1	100	79.604	Cercocebus_atys
ENSODEG00000002587	URB1	99	87.274	ENSCLAG00000005262	URB1	100	87.274	Chinchilla_lanigera
ENSODEG00000002587	URB1	99	78.249	ENSCSAG00000009584	URB1	100	78.249	Chlorocebus_sabaeus
ENSODEG00000002587	URB1	99	57.598	ENSCPBG00000006454	URB1	99	57.598	Chrysemys_picta_bellii
ENSODEG00000002587	URB1	99	79.385	ENSCANG00000031088	URB1	100	79.385	Colobus_angolensis_palliatus
ENSODEG00000002587	URB1	98	75.357	ENSCGRG00001010616	Urb1	100	75.055	Cricetulus_griseus_chok1gshd
ENSODEG00000002587	URB1	98	75.135	ENSCGRG00000015840	Urb1	100	75.135	Cricetulus_griseus_crigri
ENSODEG00000002587	URB1	99	41.995	ENSCSEG00000012616	urb1	99	42.193	Cynoglossus_semilaevis
ENSODEG00000002587	URB1	94	44.970	ENSCVAG00000009076	urb1	99	53.312	Cyprinodon_variegatus
ENSODEG00000002587	URB1	99	43.923	ENSDARG00000060308	urb1	99	44.098	Danio_rerio
ENSODEG00000002587	URB1	85	75.866	ENSDNOG00000015586	URB1	99	75.866	Dasypus_novemcinctus
ENSODEG00000002587	URB1	99	78.257	ENSDORG00000006735	Urb1	100	78.257	Dipodomys_ordii
ENSODEG00000002587	URB1	92	79.273	ENSETEG00000009080	URB1	92	79.273	Echinops_telfairi
ENSODEG00000002587	URB1	99	76.923	ENSEASG00005007711	URB1	100	76.923	Equus_asinus_asinus
ENSODEG00000002587	URB1	97	87.271	ENSECAG00000013206	URB1	100	86.149	Equus_caballus
ENSODEG00000002587	URB1	57	83.817	ENSEEUG00000003626	-	58	83.817	Erinaceus_europaeus
ENSODEG00000002587	URB1	99	44.806	ENSELUG00000020516	urb1	99	44.894	Esox_lucius
ENSODEG00000002587	URB1	99	76.396	ENSFCAG00000002177	URB1	100	76.396	Felis_catus
ENSODEG00000002587	URB1	97	50.442	ENSFALG00000004636	URB1	99	50.686	Ficedula_albicollis
ENSODEG00000002587	URB1	99	84.345	ENSFDAG00000007288	URB1	95	84.345	Fukomys_damarensis
ENSODEG00000002587	URB1	99	41.327	ENSFHEG00000000202	urb1	99	42.427	Fundulus_heteroclitus
ENSODEG00000002587	URB1	92	48.249	ENSGMOG00000001838	urb1	93	48.249	Gadus_morhua
ENSODEG00000002587	URB1	99	55.721	ENSGALG00000015887	URB1	99	55.546	Gallus_gallus
ENSODEG00000002587	URB1	93	53.122	ENSGAFG00000020694	urb1	97	53.122	Gambusia_affinis
ENSODEG00000002587	URB1	99	43.662	ENSGACG00000011703	urb1	99	43.612	Gasterosteus_aculeatus
ENSODEG00000002587	URB1	99	57.112	ENSGAGG00000022544	URB1	99	57.112	Gopherus_agassizii
ENSODEG00000002587	URB1	99	79.560	ENSGGOG00000000285	URB1	100	79.560	Gorilla_gorilla
ENSODEG00000002587	URB1	98	44.400	ENSHBUG00000001904	urb1	99	44.119	Haplochromis_burtoni
ENSODEG00000002587	URB1	99	84.455	ENSHGLG00000004907	URB1	99	84.455	Heterocephalus_glaber_female
ENSODEG00000002587	URB1	99	85.130	ENSHGLG00100010749	URB1	99	85.130	Heterocephalus_glaber_male
ENSODEG00000002587	URB1	73	48.638	ENSHCOG00000018683	urb1	98	49.027	Hippocampus_comes
ENSODEG00000002587	URB1	99	40.588	ENSIPUG00000014721	urb1	99	40.404	Ictalurus_punctatus
ENSODEG00000002587	URB1	99	79.965	ENSSTOG00000004539	URB1	100	79.965	Ictidomys_tridecemlineatus
ENSODEG00000002587	URB1	99	41.210	ENSKMAG00000006001	urb1	98	47.679	Kryptolebias_marmoratus
ENSODEG00000002587	URB1	96	41.720	ENSLBEG00000027208	urb1	98	51.941	Labrus_bergylta
ENSODEG00000002587	URB1	99	47.613	ENSLACG00000017059	URB1	100	47.527	Latimeria_chalumnae
ENSODEG00000002587	URB1	99	45.905	ENSLOCG00000009190	urb1	99	45.972	Lepisosteus_oculatus
ENSODEG00000002587	URB1	99	74.318	ENSLAFG00000010407	URB1	99	74.318	Loxodonta_africana
ENSODEG00000002587	URB1	99	79.473	ENSMFAG00000034391	URB1	97	79.473	Macaca_fascicularis
ENSODEG00000002587	URB1	99	79.341	ENSMMUG00000010295	URB1	100	79.341	Macaca_mulatta
ENSODEG00000002587	URB1	99	78.154	ENSMNEG00000032981	URB1	100	78.154	Macaca_nemestrina
ENSODEG00000002587	URB1	99	79.648	ENSMLEG00000041435	URB1	100	79.648	Mandrillus_leucophaeus
ENSODEG00000002587	URB1	99	43.444	ENSMAMG00000011238	urb1	99	43.389	Mastacembelus_armatus
ENSODEG00000002587	URB1	98	39.560	ENSMZEG00005011862	urb1	99	39.340	Maylandia_zebra
ENSODEG00000002587	URB1	98	55.808	ENSMGAG00000014512	URB1	99	55.630	Meleagris_gallopavo
ENSODEG00000002587	URB1	93	79.186	ENSMAUG00000010516	Urb1	100	78.248	Mesocricetus_auratus
ENSODEG00000002587	URB1	99	78.628	ENSMICG00000016424	URB1	99	78.628	Microcebus_murinus
ENSODEG00000002587	URB1	99	73.184	ENSMOCG00000012613	Urb1	99	73.184	Microtus_ochrogaster
ENSODEG00000002587	URB1	99	61.727	ENSMODG00000021076	URB1	99	61.727	Monodelphis_domestica
ENSODEG00000002587	URB1	97	52.431	ENSMALG00000017411	urb1	99	52.431	Monopterus_albus
ENSODEG00000002587	URB1	99	74.428	MGP_CAROLIEiJ_G0020948	Urb1	99	74.428	Mus_caroli
ENSODEG00000002587	URB1	99	74.384	ENSMUSG00000039929	Urb1	99	74.384	Mus_musculus
ENSODEG00000002587	URB1	99	74.604	MGP_PahariEiJ_G0016653	Urb1	99	74.604	Mus_pahari
ENSODEG00000002587	URB1	99	74.417	MGP_SPRETEiJ_G0021854	Urb1	99	74.417	Mus_spretus
ENSODEG00000002587	URB1	99	76.056	ENSMPUG00000001123	URB1	100	76.100	Mustela_putorius_furo
ENSODEG00000002587	URB1	99	75.903	ENSNGAG00000001905	Urb1	99	75.903	Nannospalax_galili
ENSODEG00000002587	URB1	81	44.997	ENSNBRG00000001049	urb1	99	44.997	Neolamprologus_brichardi
ENSODEG00000002587	URB1	99	77.891	ENSNLEG00000026872	URB1	100	77.846	Nomascus_leucogenys
ENSODEG00000002587	URB1	95	57.574	ENSMEUG00000010828	URB1	96	57.831	Notamacropus_eugenii
ENSODEG00000002587	URB1	99	71.171	ENSOPRG00000013482	URB1	100	71.171	Ochotona_princeps
ENSODEG00000002587	URB1	99	44.182	ENSONIG00000005599	urb1	99	44.182	Oreochromis_niloticus
ENSODEG00000002587	URB1	99	77.415	ENSOCUG00000009381	URB1	99	77.415	Oryctolagus_cuniculus
ENSODEG00000002587	URB1	99	43.884	ENSORLG00000003429	urb1	99	43.909	Oryzias_latipes
ENSODEG00000002587	URB1	99	43.805	ENSORLG00020013785	urb1	99	43.805	Oryzias_latipes_hni
ENSODEG00000002587	URB1	92	50.000	ENSORLG00015019421	urb1	98	50.000	Oryzias_latipes_hsok
ENSODEG00000002587	URB1	82	50.971	ENSOMEG00000002094	urb1	98	50.971	Oryzias_melastigma
ENSODEG00000002587	URB1	99	78.223	ENSOGAG00000017140	URB1	100	78.223	Otolemur_garnettii
ENSODEG00000002587	URB1	97	75.614	ENSOARG00000013679	URB1	99	75.445	Ovis_aries
ENSODEG00000002587	URB1	99	79.912	ENSPPAG00000003423	URB1	100	79.912	Pan_paniscus
ENSODEG00000002587	URB1	99	76.264	ENSPPRG00000023131	URB1	100	76.264	Panthera_pardus
ENSODEG00000002587	URB1	93	75.579	ENSPTIG00000016125	URB1	98	75.495	Panthera_tigris_altaica
ENSODEG00000002587	URB1	99	79.780	ENSPTRG00000013852	URB1	100	79.780	Pan_troglodytes
ENSODEG00000002587	URB1	99	79.824	ENSPANG00000021964	URB1	100	79.824	Papio_anubis
ENSODEG00000002587	URB1	99	46.446	ENSPKIG00000003683	urb1	98	46.534	Paramormyrops_kingsleyae
ENSODEG00000002587	URB1	99	74.647	ENSPEMG00000021205	Urb1	99	74.647	Peromyscus_maniculatus_bairdii
ENSODEG00000002587	URB1	71	37.416	ENSPMAG00000009733	URB1	99	33.860	Petromyzon_marinus
ENSODEG00000002587	URB1	99	61.620	ENSPCIG00000016350	URB1	99	61.995	Phascolarctos_cinereus
ENSODEG00000002587	URB1	96	42.883	ENSPLAG00000004371	urb1	99	42.974	Poecilia_latipinna
ENSODEG00000002587	URB1	99	43.440	ENSPMEG00000006634	urb1	99	43.572	Poecilia_mexicana
ENSODEG00000002587	URB1	99	43.668	ENSPREG00000013453	urb1	99	43.799	Poecilia_reticulata
ENSODEG00000002587	URB1	99	79.523	ENSPPYG00000011359	URB1	100	79.473	Pongo_abelii
ENSODEG00000002587	URB1	99	64.670	ENSPCAG00000007430	URB1	99	64.670	Procavia_capensis
ENSODEG00000002587	URB1	99	79.112	ENSPCOG00000022695	URB1	100	79.112	Propithecus_coquereli
ENSODEG00000002587	URB1	99	75.066	ENSPVAG00000000889	URB1	100	75.066	Pteropus_vampyrus
ENSODEG00000002587	URB1	98	43.156	ENSPNYG00000010589	urb1	99	42.845	Pundamilia_nyererei
ENSODEG00000002587	URB1	99	40.009	ENSPNAG00000019324	urb1	99	40.131	Pygocentrus_nattereri
ENSODEG00000002587	URB1	100	74.561	ENSRNOG00000002080	Urb1	100	74.649	Rattus_norvegicus
ENSODEG00000002587	URB1	99	79.341	ENSRBIG00000033122	URB1	100	79.341	Rhinopithecus_bieti
ENSODEG00000002587	URB1	99	79.429	ENSRROG00000040237	URB1	100	79.429	Rhinopithecus_roxellana
ENSODEG00000002587	URB1	99	78.779	ENSSBOG00000027672	URB1	100	78.779	Saimiri_boliviensis_boliviensis
ENSODEG00000002587	URB1	99	61.559	ENSSHAG00000005140	URB1	99	61.559	Sarcophilus_harrisii
ENSODEG00000002587	URB1	91	46.538	ENSSFOG00015000339	urb1	98	46.430	Scleropages_formosus
ENSODEG00000002587	URB1	99	43.862	ENSSMAG00000003782	urb1	99	44.100	Scophthalmus_maximus
ENSODEG00000002587	URB1	99	44.624	ENSSDUG00000012313	urb1	99	44.624	Seriola_dumerili
ENSODEG00000002587	URB1	99	44.488	ENSSLDG00000023179	urb1	99	44.488	Seriola_lalandi_dorsalis
ENSODEG00000002587	URB1	99	53.746	ENSSPUG00000012447	URB1	99	53.789	Sphenodon_punctatus
ENSODEG00000002587	URB1	99	43.647	ENSSPAG00000006325	urb1	99	43.802	Stegastes_partitus
ENSODEG00000002587	URB1	99	75.604	ENSSSCG00000032024	URB1	100	75.516	Sus_scrofa
ENSODEG00000002587	URB1	74	57.245	ENSTGUG00000013442	URB1	100	57.245	Taeniopygia_guttata
ENSODEG00000002587	URB1	99	43.195	ENSTRUG00000009372	urb1	100	42.945	Takifugu_rubripes
ENSODEG00000002587	URB1	99	42.510	ENSTNIG00000016277	urb1	100	42.403	Tetraodon_nigroviridis
ENSODEG00000002587	URB1	81	81.792	ENSTBEG00000010044	URB1	81	81.792	Tupaia_belangeri
ENSODEG00000002587	URB1	90	77.557	ENSTTRG00000007712	URB1	92	77.766	Tursiops_truncatus
ENSODEG00000002587	URB1	99	76.967	ENSUAMG00000012231	URB1	99	76.967	Ursus_americanus
ENSODEG00000002587	URB1	92	78.285	ENSUMAG00000017419	URB1	99	76.830	Ursus_maritimus
ENSODEG00000002587	URB1	68	87.075	ENSVPAG00000001164	URB1	68	87.075	Vicugna_pacos
ENSODEG00000002587	URB1	99	76.065	ENSVVUG00000000551	URB1	100	76.065	Vulpes_vulpes
ENSODEG00000002587	URB1	99	49.505	ENSXETG00000009895	urb1	100	49.569	Xenopus_tropicalis
ENSODEG00000002587	URB1	99	41.249	ENSXCOG00000005500	urb1	99	41.249	Xiphophorus_couchianus
ENSODEG00000002587	URB1	99	41.223	ENSXMAG00000007253	urb1	99	41.267	Xiphophorus_maculatus