EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000002650 (Gene tree)
Gene ID: 101567683
Gene Symbol: -
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 47298 bases
Position: chrJH651649.1:3545837-3593134
Accession: 101567683
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000003454	ResIII	PF04851.15	3e-13	1	1
ENSODEP00000003455	ResIII	PF04851.15	3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000003526	-	2199	XM_023701380	ENSODEP00000003454	732 (aa)	XP_023557148	-
ENSODET00000003527	-	2235	XM_004649023	ENSODEP00000003455	744 (aa)	-	-

Gene Model

Click here to download ENSODEG00000002650's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000002650's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000002650	-	76	32.051	ENSODEG00000016588	ERCC6L2	89	30.250
ENSODEG00000002650	-	67	31.456	ENSODEG00000002494	CHD1L	50	31.456
ENSODEG00000002650	-	77	48.217	ENSODEG00000008519	RAD54L	76	48.217
ENSODEG00000002650	-	96	96.302	ENSODEG00000019564	-	89	90.199
ENSODEG00000002650	-	78	32.231	ENSODEG00000012163	SMARCA1	52	32.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000002650	-	95	87.191	ENSG00000197275	RAD54B	78	87.191	Homo_sapiens
ENSODEG00000002650	-	91	88.938	ENSG00000265817	FSBP	93	88.938	Homo_sapiens
ENSODEG00000002650	-	96	85.846	ENSAMEG00000005834	-	89	78.863	Ailuropoda_melanoleuca
ENSODEG00000002650	-	93	73.913	ENSACIG00000013005	rad54b	82	75.000	Amphilophus_citrinellus
ENSODEG00000002650	-	93	73.913	ENSAOCG00000008523	rad54b	80	75.000	Amphiprion_ocellaris
ENSODEG00000002650	-	93	75.000	ENSAPEG00000001673	rad54b	79	75.000	Amphiprion_percula
ENSODEG00000002650	-	93	73.913	ENSATEG00000001527	rad54b	79	73.913	Anabas_testudineus
ENSODEG00000002650	-	98	75.740	ENSAPLG00000014366	-	80	75.740	Anas_platyrhynchos
ENSODEG00000002650	-	94	73.333	ENSACAG00000003671	-	99	65.332	Anolis_carolinensis
ENSODEG00000002650	-	87	86.068	ENSANAG00000019528	-	99	86.068	Aotus_nancymaae
ENSODEG00000002650	-	93	73.913	ENSACLG00000007826	rad54b	84	75.000	Astatotilapia_calliptera
ENSODEG00000002650	-	92	65.217	ENSAMXG00000039985	rad54b	83	65.217	Astyanax_mexicanus
ENSODEG00000002650	-	96	83.975	ENSBTAG00000000632	RAD54B	89	77.819	Bos_taurus
ENSODEG00000002650	-	74	39.781	WBGene00013792	Y116A8C.13	74	38.542	Caenorhabditis_elegans
ENSODEG00000002650	-	95	85.317	ENSCJAG00000000080	-	95	86.006	Callithrix_jacchus
ENSODEG00000002650	-	96	84.615	ENSCAFG00000009179	RAD54B	89	78.121	Canis_familiaris
ENSODEG00000002650	-	96	84.154	ENSCAFG00020012084	-	89	77.750	Canis_lupus_dingo
ENSODEG00000002650	-	96	84.284	ENSCHIG00000008230	-	89	78.191	Capra_hircus
ENSODEG00000002650	-	96	86.000	ENSTSYG00000013234	-	89	79.455	Carlito_syrichta
ENSODEG00000002650	-	96	90.462	ENSCPOG00000011643	-	90	84.406	Cavia_porcellus
ENSODEG00000002650	-	95	85.317	ENSCCAG00000011754	-	95	86.006	Cebus_capucinus
ENSODEG00000002650	-	95	86.862	ENSCATG00000030661	-	93	88.331	Cercocebus_atys
ENSODEG00000002650	-	96	91.525	ENSCLAG00000010476	-	91	84.969	Chinchilla_lanigera
ENSODEG00000002650	-	95	86.708	ENSCSAG00000012712	-	78	86.708	Chlorocebus_sabaeus
ENSODEG00000002650	-	95	74.154	ENSCPBG00000003204	-	87	68.742	Chrysemys_picta_bellii
ENSODEG00000002650	-	95	86.553	ENSCANG00000017939	-	93	88.035	Colobus_angolensis_palliatus
ENSODEG00000002650	-	96	81.846	ENSCGRG00001020184	Rad54b	92	75.000	Cricetulus_griseus_chok1gshd
ENSODEG00000002650	-	96	80.308	ENSCGRG00000016752	Rad54b	91	73.762	Cricetulus_griseus_crigri
ENSODEG00000002650	-	93	75.000	ENSCSEG00000001601	rad54b	81	75.000	Cynoglossus_semilaevis
ENSODEG00000002650	-	93	78.261	ENSCVAG00000009200	rad54b	79	79.545	Cyprinodon_variegatus
ENSODEG00000002650	-	93	63.636	ENSDARG00000092134	rad54b	100	60.215	Danio_rerio
ENSODEG00000002650	-	95	84.154	ENSDNOG00000015535	-	88	77.104	Dasypus_novemcinctus
ENSODEG00000002650	-	96	85.538	ENSDORG00000002492	Rad54b	81	85.846	Dipodomys_ordii
ENSODEG00000002650	-	81	85.795	ENSETEG00000010605	-	87	76.642	Echinops_telfairi
ENSODEG00000002650	-	99	47.975	ENSEBUG00000009104	rad54b	86	47.975	Eptatretus_burgeri
ENSODEG00000002650	-	96	84.462	ENSEASG00005004021	-	92	77.599	Equus_asinus_asinus
ENSODEG00000002650	-	96	84.615	ENSECAG00000021949	-	95	77.847	Equus_caballus
ENSODEG00000002650	-	79	83.851	ENSEEUG00000008056	-	65	83.851	Erinaceus_europaeus
ENSODEG00000002650	-	96	72.093	ENSELUG00000009287	rad54b	77	72.093	Esox_lucius
ENSODEG00000002650	-	96	85.890	ENSFCAG00000015513	-	94	87.059	Felis_catus
ENSODEG00000002650	-	97	84.444	ENSFALG00000005467	-	78	84.444	Ficedula_albicollis
ENSODEG00000002650	-	99	92.188	ENSFDAG00000020541	-	89	83.747	Fukomys_damarensis
ENSODEG00000002650	-	96	77.273	ENSFHEG00000014382	rad54b	78	77.273	Fundulus_heteroclitus
ENSODEG00000002650	-	92	72.093	ENSGMOG00000014774	rad54b	94	73.171	Gadus_morhua
ENSODEG00000002650	-	99	74.963	ENSGALG00000043597	RAD54B	80	74.963	Gallus_gallus
ENSODEG00000002650	-	96	77.273	ENSGAFG00000007901	rad54b	83	61.972	Gambusia_affinis
ENSODEG00000002650	-	95	59.908	ENSGACG00000009128	rad54b	88	54.121	Gasterosteus_aculeatus
ENSODEG00000002650	-	95	73.652	ENSGAGG00000018747	-	87	68.204	Gopherus_agassizii
ENSODEG00000002650	-	95	87.077	ENSGGOG00000023516	-	79	87.077	Gorilla_gorilla
ENSODEG00000002650	-	97	59.877	ENSHBUG00000016017	rad54b	77	75.000	Haplochromis_burtoni
ENSODEG00000002650	-	95	91.667	ENSHGLG00000008263	RAD54B	88	82.801	Heterocephalus_glaber_female
ENSODEG00000002650	-	95	91.667	ENSHGLG00100008108	-	88	81.829	Heterocephalus_glaber_male
ENSODEG00000002650	-	92	72.340	ENSHCOG00000004764	rad54b	87	66.667	Hippocampus_comes
ENSODEG00000002650	-	96	58.833	ENSIPUG00000018531	rad54b	84	53.383	Ictalurus_punctatus
ENSODEG00000002650	-	95	85.404	ENSSTOG00000010791	-	88	78.098	Ictidomys_tridecemlineatus
ENSODEG00000002650	-	96	81.692	ENSJJAG00000010314	Rad54b	89	75.248	Jaculus_jaculus
ENSODEG00000002650	-	98	59.259	ENSKMAG00000004744	rad54b	86	59.259	Kryptolebias_marmoratus
ENSODEG00000002650	-	90	68.899	ENSLACG00000000859	-	90	68.899	Latimeria_chalumnae
ENSODEG00000002650	-	99	64.956	ENSLOCG00000010100	rad54b	95	58.642	Lepisosteus_oculatus
ENSODEG00000002650	-	100	77.351	ENSLAFG00000015315	-	100	77.351	Loxodonta_africana
ENSODEG00000002650	-	95	86.553	ENSMFAG00000031629	-	93	88.035	Macaca_fascicularis
ENSODEG00000002650	-	95	86.553	ENSMMUG00000005659	-	78	86.553	Macaca_mulatta
ENSODEG00000002650	-	95	86.553	ENSMNEG00000016408	-	78	86.553	Macaca_nemestrina
ENSODEG00000002650	-	95	86.862	ENSMLEG00000006946	-	78	86.862	Mandrillus_leucophaeus
ENSODEG00000002650	-	97	72.727	ENSMAMG00000012269	rad54b	83	72.727	Mastacembelus_armatus
ENSODEG00000002650	-	93	73.913	ENSMZEG00005005281	rad54b	87	75.000	Maylandia_zebra
ENSODEG00000002650	-	99	75.296	ENSMGAG00000012024	-	80	75.296	Meleagris_gallopavo
ENSODEG00000002650	-	97	77.730	ENSMAUG00000013586	Rad54b	83	81.846	Mesocricetus_auratus
ENSODEG00000002650	-	95	86.574	ENSMICG00000000754	-	82	86.574	Microcebus_murinus
ENSODEG00000002650	-	95	79.661	ENSMOCG00000020035	Rad54b	90	72.333	Microtus_ochrogaster
ENSODEG00000002650	-	97	77.273	ENSMMOG00000003394	rad54b	82	77.273	Mola_mola
ENSODEG00000002650	-	95	78.120	ENSMODG00000007343	-	99	71.891	Monodelphis_domestica
ENSODEG00000002650	-	86	59.938	ENSMALG00000001520	rad54b	99	59.938	Monopterus_albus
ENSODEG00000002650	-	96	82.154	MGP_CAROLIEiJ_G0025810	Rad54b	91	75.371	Mus_caroli
ENSODEG00000002650	-	96	81.077	ENSMUSG00000078773	Rad54b	91	74.226	Mus_musculus
ENSODEG00000002650	-	96	81.385	MGP_PahariEiJ_G0023933	Rad54b	91	74.783	Mus_pahari
ENSODEG00000002650	-	96	82.308	MGP_SPRETEiJ_G0026758	Rad54b	91	75.217	Mus_spretus
ENSODEG00000002650	-	96	84.615	ENSMPUG00000008878	-	99	77.503	Mustela_putorius_furo
ENSODEG00000002650	-	95	85.494	ENSMLUG00000008953	-	88	78.040	Myotis_lucifugus
ENSODEG00000002650	-	96	83.994	ENSNGAG00000017537	Rad54b	80	84.299	Nannospalax_galili
ENSODEG00000002650	-	97	75.000	ENSNBRG00000013394	rad54b	84	75.000	Neolamprologus_brichardi
ENSODEG00000002650	-	95	87.037	ENSNLEG00000003062	-	93	88.791	Nomascus_leucogenys
ENSODEG00000002650	-	75	82.661	ENSMEUG00000012426	-	62	82.661	Notamacropus_eugenii
ENSODEG00000002650	-	97	75.000	ENSONIG00000006067	rad54b	79	75.000	Oreochromis_niloticus
ENSODEG00000002650	-	94	75.036	ENSOANG00000011348	-	92	75.036	Ornithorhynchus_anatinus
ENSODEG00000002650	-	95	84.462	ENSOCUG00000016478	-	88	77.640	Oryctolagus_cuniculus
ENSODEG00000002650	-	93	77.273	ENSORLG00000008918	rad54b	99	62.250	Oryzias_latipes
ENSODEG00000002650	-	86	62.250	ENSORLG00020012171	rad54b	99	62.250	Oryzias_latipes_hni
ENSODEG00000002650	-	93	77.273	ENSORLG00015018536	rad54b	74	77.273	Oryzias_latipes_hsok
ENSODEG00000002650	-	90	75.000	ENSOMEG00000004345	rad54b	87	75.000	Oryzias_melastigma
ENSODEG00000002650	-	96	85.054	ENSOGAG00000007854	-	89	79.182	Otolemur_garnettii
ENSODEG00000002650	-	96	83.821	ENSOARG00000007691	-	99	77.407	Ovis_aries
ENSODEG00000002650	-	95	84.877	ENSPPAG00000029572	-	78	84.877	Pan_paniscus
ENSODEG00000002650	-	96	86.043	ENSPPRG00000007571	-	94	87.206	Panthera_pardus
ENSODEG00000002650	-	91	87.353	ENSPTIG00000012670	-	94	87.353	Panthera_tigris_altaica
ENSODEG00000002650	-	95	87.037	ENSPTRG00000020427	-	93	88.791	Pan_troglodytes
ENSODEG00000002650	-	95	86.862	ENSPANG00000019566	-	78	86.862	Papio_anubis
ENSODEG00000002650	-	95	63.889	ENSPKIG00000014974	rad54b	78	63.889	Paramormyrops_kingsleyae
ENSODEG00000002650	-	95	73.077	ENSPSIG00000002383	-	98	68.244	Pelodiscus_sinensis
ENSODEG00000002650	-	96	82.462	ENSPEMG00000012133	Rad54b	81	82.462	Peromyscus_maniculatus_bairdii
ENSODEG00000002650	-	97	73.913	ENSPMAG00000002916	rad54b	91	73.913	Petromyzon_marinus
ENSODEG00000002650	-	95	78.769	ENSPCIG00000020151	-	94	71.820	Phascolarctos_cinereus
ENSODEG00000002650	-	96	77.273	ENSPFOG00000023411	rad54b	77	77.273	Poecilia_formosa
ENSODEG00000002650	-	96	77.273	ENSPLAG00000010430	rad54b	77	77.273	Poecilia_latipinna
ENSODEG00000002650	-	97	77.273	ENSPMEG00000016873	rad54b	85	77.273	Poecilia_mexicana
ENSODEG00000002650	-	96	77.273	ENSPREG00000018443	rad54b	83	77.273	Poecilia_reticulata
ENSODEG00000002650	-	95	87.191	ENSPPYG00000018750	-	78	87.191	Pongo_abelii
ENSODEG00000002650	-	95	86.883	ENSPCOG00000026845	-	93	88.053	Propithecus_coquereli
ENSODEG00000002650	-	91	86.283	ENSPVAG00000000261	-	78	86.283	Pteropus_vampyrus
ENSODEG00000002650	-	93	73.913	ENSPNYG00000018303	rad54b	88	75.000	Pundamilia_nyererei
ENSODEG00000002650	-	97	67.442	ENSPNAG00000000295	rad54b	85	67.442	Pygocentrus_nattereri
ENSODEG00000002650	-	96	79.846	ENSRNOG00000039949	Rad54b	91	73.573	Rattus_norvegicus
ENSODEG00000002650	-	95	86.090	ENSRBIG00000020419	-	78	86.090	Rhinopithecus_bieti
ENSODEG00000002650	-	95	86.090	ENSRROG00000039897	-	78	86.090	Rhinopithecus_roxellana
ENSODEG00000002650	-	76	41.845	YBR073W	RDH54	61	42.175	Saccharomyces_cerevisiae
ENSODEG00000002650	-	95	85.162	ENSSBOG00000028501	-	78	85.162	Saimiri_boliviensis_boliviensis
ENSODEG00000002650	-	94	79.199	ENSSHAG00000017038	-	87	73.300	Sarcophilus_harrisii
ENSODEG00000002650	-	77	64.561	ENSSFOG00015008483	rad54b	92	62.075	Scleropages_formosus
ENSODEG00000002650	-	92	76.087	ENSSMAG00000018659	rad54b	73	76.087	Scophthalmus_maximus
ENSODEG00000002650	-	94	70.455	ENSSDUG00000001122	rad54b	75	70.455	Seriola_dumerili
ENSODEG00000002650	-	96	70.455	ENSSLDG00000013787	rad54b	83	70.455	Seriola_lalandi_dorsalis
ENSODEG00000002650	-	96	72.994	ENSSPUG00000016497	-	91	67.244	Sphenodon_punctatus
ENSODEG00000002650	-	97	79.545	ENSSPAG00000012800	rad54b	83	79.545	Stegastes_partitus
ENSODEG00000002650	-	96	84.853	ENSSSCG00000006101	-	99	78.463	Sus_scrofa
ENSODEG00000002650	-	93	80.851	ENSTGUG00000011880	-	76	80.851	Taeniopygia_guttata
ENSODEG00000002650	-	93	72.340	ENSTRUG00000010015	rad54b	74	72.340	Takifugu_rubripes
ENSODEG00000002650	-	95	82.258	ENSTTRG00000006312	-	78	82.258	Tursiops_truncatus
ENSODEG00000002650	-	96	86.308	ENSUMAG00000016401	-	89	79.234	Ursus_maritimus
ENSODEG00000002650	-	96	85.208	ENSVPAG00000003157	-	89	77.543	Vicugna_pacos
ENSODEG00000002650	-	94	75.926	ENSXETG00000025924	rad54b	87	75.926	Xenopus_tropicalis
ENSODEG00000002650	-	96	77.273	ENSXMAG00000013141	rad54b	83	77.273	Xiphophorus_maculatus