EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000002970 (Gene tree)
Gene ID: 101572091
Gene Symbol: TRNAU1AP
Alias: FLJ20503|SECP43|TRSPAP1
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 22735 bases
Position: chrJH651678.1:2488061-2510795
Accession: 101572091
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000003874	RRM_1	PF00076.22	2.1e-27	1	2
ENSODEP00000003874	RRM_1	PF00076.22	2.1e-27	2	2
ENSODEP00000003875	RRM_1	PF00076.22	9.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000003952	TRNAU1AP-202	744	-	ENSODEP00000003875	247 (aa)	-	-
ENSODET00000003951	TRNAU1AP-201	961	XM_004642890	ENSODEP00000003874	287 (aa)	XP_004642947	UPI000334070B

Gene Model

Click here to download ENSODEG00000002970's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000002970's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000002970	TRNAU1AP	60	30.366	ENSODEG00000017741	TIAL1	69	30.366
ENSODEG00000002970	TRNAU1AP	78	30.198	ENSODEG00000009409	TIA1	60	31.285

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSG00000180098	TRNAU1AP	100	98.955	Homo_sapiens
ENSODEG00000002970	TRNAU1AP	98	58.746	ENSAPOG00000007148	TRNAU1AP	98	58.746	Acanthochromis_polyacanthus
ENSODEG00000002970	TRNAU1AP	100	97.909	ENSAMEG00000011367	TRNAU1AP	100	97.909	Ailuropoda_melanoleuca
ENSODEG00000002970	TRNAU1AP	91	70.115	ENSACIG00000004161	trnau1apa	93	70.115	Amphilophus_citrinellus
ENSODEG00000002970	TRNAU1AP	98	58.416	ENSAOCG00000008056	trnau1apa	98	58.416	Amphiprion_ocellaris
ENSODEG00000002970	TRNAU1AP	98	58.416	ENSAPEG00000008868	trnau1apa	98	58.586	Amphiprion_percula
ENSODEG00000002970	TRNAU1AP	96	59.732	ENSATEG00000012140	trnau1apa	98	56.270	Anabas_testudineus
ENSODEG00000002970	TRNAU1AP	94	94.074	ENSAPLG00000002606	TRNAU1AP	99	94.074	Anas_platyrhynchos
ENSODEG00000002970	TRNAU1AP	67	51.295	ENSACAG00000004205	-	74	51.295	Anolis_carolinensis
ENSODEG00000002970	TRNAU1AP	99	76.923	ENSACAG00000003995	-	99	76.923	Anolis_carolinensis
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSANAG00000018976	TRNAU1AP	100	98.955	Aotus_nancymaae
ENSODEG00000002970	TRNAU1AP	98	59.000	ENSACLG00000018515	trnau1apa	98	60.403	Astatotilapia_calliptera
ENSODEG00000002970	TRNAU1AP	99	56.401	ENSAMXG00000013750	trnau1apa	94	56.401	Astyanax_mexicanus
ENSODEG00000002970	TRNAU1AP	94	65.556	ENSAMXG00000029240	-	96	65.556	Astyanax_mexicanus
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSBTAG00000010393	TRNAU1AP	100	98.606	Bos_taurus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSCJAG00000009717	TRNAU1AP	100	98.955	Callithrix_jacchus
ENSODEG00000002970	TRNAU1AP	100	99.303	ENSCAFG00000011735	TRNAU1AP	100	99.303	Canis_familiaris
ENSODEG00000002970	TRNAU1AP	100	99.303	ENSCAFG00020023584	TRNAU1AP	100	99.303	Canis_lupus_dingo
ENSODEG00000002970	TRNAU1AP	100	98.381	ENSCHIG00000023215	TRNAU1AP	100	98.381	Capra_hircus
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSTSYG00000003506	TRNAU1AP	100	98.606	Carlito_syrichta
ENSODEG00000002970	TRNAU1AP	100	99.652	ENSCPOG00000001925	TRNAU1AP	100	99.652	Cavia_porcellus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSCCAG00000037506	TRNAU1AP	100	98.955	Cebus_capucinus
ENSODEG00000002970	TRNAU1AP	100	98.785	ENSCATG00000044617	TRNAU1AP	100	98.785	Cercocebus_atys
ENSODEG00000002970	TRNAU1AP	100	99.652	ENSCLAG00000008223	TRNAU1AP	100	99.652	Chinchilla_lanigera
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSCSAG00000001014	TRNAU1AP	100	98.606	Chlorocebus_sabaeus
ENSODEG00000002970	TRNAU1AP	95	93.796	ENSCPBG00000000121	TRNAU1AP	100	93.796	Chrysemys_picta_bellii
ENSODEG00000002970	TRNAU1AP	99	44.681	ENSCSAVG00000011781	-	98	44.681	Ciona_savignyi
ENSODEG00000002970	TRNAU1AP	100	87.108	ENSCANG00000041949	TRNAU1AP	100	98.305	Colobus_angolensis_palliatus
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSCGRG00001004713	Trnau1ap	100	98.606	Cricetulus_griseus_chok1gshd
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSCGRG00000014532	Trnau1ap	100	98.606	Cricetulus_griseus_crigri
ENSODEG00000002970	TRNAU1AP	98	58.333	ENSCSEG00000006663	trnau1apa	94	58.607	Cynoglossus_semilaevis
ENSODEG00000002970	TRNAU1AP	97	57.823	ENSCVAG00000018069	trnau1apa	94	59.341	Cyprinodon_variegatus
ENSODEG00000002970	TRNAU1AP	96	53.357	ENSDARG00000101323	trnau1apa	89	51.761	Danio_rerio
ENSODEG00000002970	TRNAU1AP	67	77.604	ENSDNOG00000047959	-	97	78.075	Dasypus_novemcinctus
ENSODEG00000002970	TRNAU1AP	100	99.303	ENSDNOG00000033009	TRNAU1AP	100	99.303	Dasypus_novemcinctus
ENSODEG00000002970	TRNAU1AP	99	90.909	ENSDORG00000006349	Trnau1ap	100	100.000	Dipodomys_ordii
ENSODEG00000002970	TRNAU1AP	96	51.493	FBgn0031607	CG15440	51	52.023	Drosophila_melanogaster
ENSODEG00000002970	TRNAU1AP	85	94.286	ENSETEG00000012594	TRNAU1AP	100	94.286	Echinops_telfairi
ENSODEG00000002970	TRNAU1AP	55	59.341	ENSEBUG00000006349	-	60	59.341	Eptatretus_burgeri
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSEASG00005010062	TRNAU1AP	100	98.955	Equus_asinus_asinus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSECAG00000012980	TRNAU1AP	100	98.955	Equus_caballus
ENSODEG00000002970	TRNAU1AP	96	63.415	ENSELUG00000017686	trnau1apa	94	63.066	Esox_lucius
ENSODEG00000002970	TRNAU1AP	96	70.526	ENSELUG00000022790	-	94	53.390	Esox_lucius
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSFCAG00000013401	TRNAU1AP	100	98.955	Felis_catus
ENSODEG00000002970	TRNAU1AP	95	94.161	ENSFALG00000001371	TRNAU1AP	100	94.161	Ficedula_albicollis
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSFDAG00000018599	TRNAU1AP	100	98.955	Fukomys_damarensis
ENSODEG00000002970	TRNAU1AP	79	60.816	ENSFHEG00000018232	trnau1apa	86	56.757	Fundulus_heteroclitus
ENSODEG00000002970	TRNAU1AP	95	53.846	ENSGMOG00000016508	trnau1apa	93	54.930	Gadus_morhua
ENSODEG00000002970	TRNAU1AP	68	48.826	ENSGALG00000012721	C2H6orf52	95	44.402	Gallus_gallus
ENSODEG00000002970	TRNAU1AP	100	92.683	ENSGALG00000001310	-	100	92.683	Gallus_gallus
ENSODEG00000002970	TRNAU1AP	78	58.403	ENSGAFG00000004928	trnau1apa	90	59.244	Gambusia_affinis
ENSODEG00000002970	TRNAU1AP	98	60.274	ENSGACG00000001443	trnau1apa	95	59.932	Gasterosteus_aculeatus
ENSODEG00000002970	TRNAU1AP	95	94.161	ENSGAGG00000004940	TRNAU1AP	100	94.161	Gopherus_agassizii
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSGGOG00000003511	TRNAU1AP	100	98.955	Gorilla_gorilla
ENSODEG00000002970	TRNAU1AP	98	58.033	ENSHBUG00000002510	trnau1apa	98	59.406	Haplochromis_burtoni
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSHGLG00000010380	TRNAU1AP	100	98.955	Heterocephalus_glaber_female
ENSODEG00000002970	TRNAU1AP	100	96.516	ENSHGLG00100012699	TRNAU1AP	100	96.516	Heterocephalus_glaber_male
ENSODEG00000002970	TRNAU1AP	99	58.086	ENSHCOG00000014770	trnau1apa	97	66.429	Hippocampus_comes
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSSTOG00000000079	TRNAU1AP	100	98.955	Ictidomys_tridecemlineatus
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSJJAG00000010128	Trnau1ap	100	98.606	Jaculus_jaculus
ENSODEG00000002970	TRNAU1AP	95	60.208	ENSKMAG00000001230	trnau1apa	93	58.478	Kryptolebias_marmoratus
ENSODEG00000002970	TRNAU1AP	95	60.751	ENSLBEG00000011683	trnau1apa	93	59.864	Labrus_bergylta
ENSODEG00000002970	TRNAU1AP	99	72.632	ENSLACG00000005541	TRNAU1AP	99	72.632	Latimeria_chalumnae
ENSODEG00000002970	TRNAU1AP	99	72.378	ENSLOCG00000004041	trnau1apa	99	71.329	Lepisosteus_oculatus
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSLAFG00000007628	TRNAU1AP	100	98.606	Loxodonta_africana
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSMFAG00000043751	TRNAU1AP	100	98.606	Macaca_fascicularis
ENSODEG00000002970	TRNAU1AP	100	98.785	ENSMMUG00000006561	TRNAU1AP	100	98.785	Macaca_mulatta
ENSODEG00000002970	TRNAU1AP	100	98.785	ENSMNEG00000044201	TRNAU1AP	100	98.785	Macaca_nemestrina
ENSODEG00000002970	TRNAU1AP	100	98.606	ENSMLEG00000015649	TRNAU1AP	100	98.606	Mandrillus_leucophaeus
ENSODEG00000002970	TRNAU1AP	98	58.958	ENSMAMG00000001247	trnau1apa	98	58.824	Mastacembelus_armatus
ENSODEG00000002970	TRNAU1AP	98	59.000	ENSMZEG00005017722	trnau1apa	98	60.403	Maylandia_zebra
ENSODEG00000002970	TRNAU1AP	97	92.446	ENSMGAG00000002105	TRNAU1AP	100	92.446	Meleagris_gallopavo
ENSODEG00000002970	TRNAU1AP	100	99.303	ENSMICG00000008386	TRNAU1AP	100	99.303	Microcebus_murinus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSMOCG00000011189	Trnau1ap	100	98.955	Microtus_ochrogaster
ENSODEG00000002970	TRNAU1AP	95	58.088	ENSMMOG00000012107	trnau1apa	92	58.088	Mola_mola
ENSODEG00000002970	TRNAU1AP	100	95.819	ENSMODG00000010927	TRNAU1AP	100	95.819	Monodelphis_domestica
ENSODEG00000002970	TRNAU1AP	96	61.092	ENSMALG00000016778	trnau1apa	94	58.362	Monopterus_albus
ENSODEG00000002970	TRNAU1AP	100	98.381	MGP_CAROLIEiJ_G0026563	Trnau1ap	100	100.000	Mus_caroli
ENSODEG00000002970	TRNAU1AP	100	98.381	ENSMUSG00000028898	Trnau1ap	100	100.000	Mus_musculus
ENSODEG00000002970	TRNAU1AP	100	98.785	MGP_PahariEiJ_G0028896	Trnau1ap	100	100.000	Mus_pahari
ENSODEG00000002970	TRNAU1AP	100	98.785	MGP_SPRETEiJ_G0027544	Trnau1ap	100	100.000	Mus_spretus
ENSODEG00000002970	TRNAU1AP	100	98.258	ENSMPUG00000015511	TRNAU1AP	100	98.258	Mustela_putorius_furo
ENSODEG00000002970	TRNAU1AP	100	99.303	ENSMLUG00000012586	TRNAU1AP	100	99.303	Myotis_lucifugus
ENSODEG00000002970	TRNAU1AP	100	97.976	ENSNGAG00000015881	Trnau1ap	100	97.976	Nannospalax_galili
ENSODEG00000002970	TRNAU1AP	99	56.997	ENSNBRG00000001758	trnau1apa	98	56.997	Neolamprologus_brichardi
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSNLEG00000009822	TRNAU1AP	100	98.955	Nomascus_leucogenys
ENSODEG00000002970	TRNAU1AP	97	94.604	ENSMEUG00000006117	TRNAU1AP	100	94.604	Notamacropus_eugenii
ENSODEG00000002970	TRNAU1AP	82	97.273	ENSOPRG00000007084	-	69	97.273	Ochotona_princeps
ENSODEG00000002970	TRNAU1AP	80	59.671	ENSONIG00000004715	trnau1apa	95	59.917	Oreochromis_niloticus
ENSODEG00000002970	TRNAU1AP	99	75.175	ENSOANG00000005325	-	99	75.175	Ornithorhynchus_anatinus
ENSODEG00000002970	TRNAU1AP	100	96.864	ENSOCUG00000011704	-	100	96.864	Oryctolagus_cuniculus
ENSODEG00000002970	TRNAU1AP	89	76.953	ENSOCUG00000006834	-	100	75.000	Oryctolagus_cuniculus
ENSODEG00000002970	TRNAU1AP	100	76.736	ENSOCUG00000002353	-	100	76.736	Oryctolagus_cuniculus
ENSODEG00000002970	TRNAU1AP	98	58.865	ENSORLG00000010428	trnau1apa	95	57.042	Oryzias_latipes
ENSODEG00000002970	TRNAU1AP	98	58.020	ENSORLG00020000926	trnau1ap	95	56.849	Oryzias_latipes_hni
ENSODEG00000002970	TRNAU1AP	98	58.020	ENSORLG00015009858	trnau1ap	95	56.849	Oryzias_latipes_hsok
ENSODEG00000002970	TRNAU1AP	98	59.044	ENSOMEG00000007873	trnau1apa	95	56.164	Oryzias_melastigma
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSOGAG00000002274	TRNAU1AP	100	98.955	Otolemur_garnettii
ENSODEG00000002970	TRNAU1AP	100	98.258	ENSOARG00000002843	TRNAU1AP	100	98.258	Ovis_aries
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSPPAG00000033927	TRNAU1AP	100	98.955	Pan_paniscus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSPPRG00000004416	TRNAU1AP	100	98.955	Panthera_pardus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSPTIG00000016677	TRNAU1AP	100	98.955	Panthera_tigris_altaica
ENSODEG00000002970	TRNAU1AP	93	80.074	ENSPTRG00000000434	-	97	78.967	Pan_troglodytes
ENSODEG00000002970	TRNAU1AP	100	98.785	ENSPANG00000016019	TRNAU1AP	100	98.785	Papio_anubis
ENSODEG00000002970	TRNAU1AP	95	59.717	ENSPKIG00000015511	trnau1apa	92	57.951	Paramormyrops_kingsleyae
ENSODEG00000002970	TRNAU1AP	94	74.468	ENSPKIG00000022205	-	93	77.528	Paramormyrops_kingsleyae
ENSODEG00000002970	TRNAU1AP	95	94.161	ENSPSIG00000006864	TRNAU1AP	100	94.161	Pelodiscus_sinensis
ENSODEG00000002970	TRNAU1AP	94	61.397	ENSPMGG00000023893	trnau1apa	91	60.148	Periophthalmus_magnuspinnatus
ENSODEG00000002970	TRNAU1AP	100	98.258	ENSPEMG00000007877	Trnau1ap	100	98.258	Peromyscus_maniculatus_bairdii
ENSODEG00000002970	TRNAU1AP	78	60.987	ENSPMAG00000005934	trnau1apa	96	60.185	Petromyzon_marinus
ENSODEG00000002970	TRNAU1AP	60	60.227	ENSPMAG00000000592	trnau1apa	97	60.227	Petromyzon_marinus
ENSODEG00000002970	TRNAU1AP	95	56.944	ENSPFOG00000008100	trnau1apa	93	57.639	Poecilia_formosa
ENSODEG00000002970	TRNAU1AP	91	56.679	ENSPLAG00000010236	trnau1apa	93	57.401	Poecilia_latipinna
ENSODEG00000002970	TRNAU1AP	96	55.862	ENSPMEG00000016387	trnau1apa	92	56.552	Poecilia_mexicana
ENSODEG00000002970	TRNAU1AP	93	53.903	ENSPREG00000019821	trnau1apa	86	64.286	Poecilia_reticulata
ENSODEG00000002970	TRNAU1AP	100	89.879	ENSPPYG00000001639	-	100	89.879	Pongo_abelii
ENSODEG00000002970	TRNAU1AP	98	95.041	ENSPCOG00000023470	-	100	95.041	Propithecus_coquereli
ENSODEG00000002970	TRNAU1AP	100	99.303	ENSPCOG00000027712	-	100	99.303	Propithecus_coquereli
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSPVAG00000017214	TRNAU1AP	100	98.955	Pteropus_vampyrus
ENSODEG00000002970	TRNAU1AP	98	58.033	ENSPNYG00000010130	trnau1apa	98	59.406	Pundamilia_nyererei
ENSODEG00000002970	TRNAU1AP	99	53.898	ENSPNAG00000024905	trnau1apa	94	53.103	Pygocentrus_nattereri
ENSODEG00000002970	TRNAU1AP	94	90.775	ENSRNOG00000055344	Trnau1ap	92	90.775	Rattus_norvegicus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSRBIG00000029083	TRNAU1AP	100	98.955	Rhinopithecus_bieti
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSRROG00000029128	TRNAU1AP	100	98.955	Rhinopithecus_roxellana
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSSBOG00000021299	TRNAU1AP	100	98.955	Saimiri_boliviensis_boliviensis
ENSODEG00000002970	TRNAU1AP	100	95.122	ENSSHAG00000008108	TRNAU1AP	100	95.122	Sarcophilus_harrisii
ENSODEG00000002970	TRNAU1AP	98	53.722	ENSSMAG00000020851	trnau1apa	98	57.049	Scophthalmus_maximus
ENSODEG00000002970	TRNAU1AP	85	71.111	ENSSDUG00000011734	trnau1apa	94	57.483	Seriola_dumerili
ENSODEG00000002970	TRNAU1AP	95	60.851	ENSSLDG00000012101	trnau1apa	92	60.851	Seriola_lalandi_dorsalis
ENSODEG00000002970	TRNAU1AP	97	98.201	ENSSARG00000007536	TRNAU1AP	100	98.201	Sorex_araneus
ENSODEG00000002970	TRNAU1AP	99	85.664	ENSSPUG00000010400	-	100	85.664	Sphenodon_punctatus
ENSODEG00000002970	TRNAU1AP	61	81.250	ENSSPUG00000010415	-	100	81.250	Sphenodon_punctatus
ENSODEG00000002970	TRNAU1AP	96	59.524	ENSSPAG00000005029	trnau1apa	98	57.980	Stegastes_partitus
ENSODEG00000002970	TRNAU1AP	100	98.955	ENSSSCG00000030284	TRNAU1AP	100	98.955	Sus_scrofa
ENSODEG00000002970	TRNAU1AP	68	52.551	ENSTGUG00000005908	-	100	52.551	Taeniopygia_guttata
ENSODEG00000002970	TRNAU1AP	97	94.604	ENSTGUG00000000735	-	100	94.604	Taeniopygia_guttata
ENSODEG00000002970	TRNAU1AP	98	58.804	ENSTRUG00000003352	trnau1apa	98	71.852	Takifugu_rubripes
ENSODEG00000002970	TRNAU1AP	95	58.885	ENSTNIG00000006129	trnau1apa	98	56.766	Tetraodon_nigroviridis
ENSODEG00000002970	TRNAU1AP	85	86.939	ENSTBEG00000008049	-	100	86.939	Tupaia_belangeri
ENSODEG00000002970	TRNAU1AP	100	99.303	ENSTTRG00000001854	TRNAU1AP	100	99.303	Tursiops_truncatus
ENSODEG00000002970	TRNAU1AP	95	98.540	ENSUAMG00000008789	TRNAU1AP	100	98.540	Ursus_americanus
ENSODEG00000002970	TRNAU1AP	100	98.258	ENSUMAG00000011068	TRNAU1AP	100	98.258	Ursus_maritimus
ENSODEG00000002970	TRNAU1AP	100	88.014	ENSVPAG00000006778	TRNAU1AP	100	88.014	Vicugna_pacos
ENSODEG00000002970	TRNAU1AP	99	97.535	ENSVVUG00000012518	TRNAU1AP	93	97.535	Vulpes_vulpes
ENSODEG00000002970	TRNAU1AP	95	55.903	ENSXMAG00000017361	trnau1apa	93	57.639	Xiphophorus_maculatus