EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSODEG00000003129 (Gene tree)
Gene ID
101581093
Gene Symbol
CPSF3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Octodon_degus
Status
putative
Strand
Plus strand
Length
23025 bases
Position
chrJH651666.1:804496-827520
Accession
101581093
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSODEP00000004097CPSF73-100_CPF11718.82.1e-5511
ENSODEP00000004097Beta-CaspPF10996.84.6e-3411
ENSODEP00000004097Lactamase_BPF00753.271.1e-1811
ENSODEP00000004097RMMBLPF07521.121e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSODET00000004176CPSF3-2012055XM_004642317ENSODEP00000004097684 (aa)XP_004642374UPI000333916D
Gene Model
Click here to download ENSODEG00000003129's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000003129's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSODEG00000003129CPSF36539.560ENSODEG00000009761INTS117439.560
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSODEG00000003129CPSF310097.076ENSG00000119203CPSF3100100.000Homo_sapiens
ENSODEG00000003129CPSF39985.862ENSAPOG00000022087cpsf39885.862Acanthochromis_polyacanthus
ENSODEG00000003129CPSF37396.994ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSODEG00000003129CPSF310097.368ENSAMEG00000008493CPSF310097.368Ailuropoda_melanoleuca
ENSODEG00000003129CPSF39283.758ENSACIG00000009846cpsf39983.758Amphilophus_citrinellus
ENSODEG00000003129CPSF39286.667ENSACIG00000023663CPSF39986.667Amphilophus_citrinellus
ENSODEG00000003129CPSF39988.088ENSAOCG00000010077CPSF39888.088Amphiprion_ocellaris
ENSODEG00000003129CPSF39986.009ENSAOCG00000022056cpsf39491.327Amphiprion_ocellaris
ENSODEG00000003129CPSF39988.088ENSAPEG00000021167CPSF39888.088Amphiprion_percula
ENSODEG00000003129CPSF39986.156ENSAPEG00000019526cpsf39886.156Amphiprion_percula
ENSODEG00000003129CPSF39984.265ENSATEG00000014525CPSF39884.265Anabas_testudineus
ENSODEG00000003129CPSF39986.156ENSATEG00000003959cpsf39886.156Anabas_testudineus
ENSODEG00000003129CPSF39893.899ENSAPLG00000006941CPSF39893.899Anas_platyrhynchos
ENSODEG00000003129CPSF39391.654ENSACAG00000001759CPSF39991.654Anolis_carolinensis
ENSODEG00000003129CPSF310090.643ENSANAG00000031254CPSF310090.643Aotus_nancymaae
ENSODEG00000003129CPSF39786.165ENSACLG00000014484cpsf39986.165Astatotilapia_calliptera
ENSODEG00000003129CPSF39286.349ENSACLG00000018846CPSF39986.349Astatotilapia_calliptera
ENSODEG00000003129CPSF39988.088ENSAMXG00000004786cpsf39888.088Astyanax_mexicanus
ENSODEG00000003129CPSF310097.222ENSBTAG00000019735CPSF310097.222Bos_taurus
ENSODEG00000003129CPSF39357.663WBGene00013460cpsf-39257.663Caenorhabditis_elegans
ENSODEG00000003129CPSF310097.076ENSCJAG00000006276CPSF310097.076Callithrix_jacchus
ENSODEG00000003129CPSF310097.368ENSCAFG00000003375CPSF39597.368Canis_familiaris
ENSODEG00000003129CPSF39097.738ENSCAFG00020026799CPSF310097.738Canis_lupus_dingo
ENSODEG00000003129CPSF310097.222ENSCHIG00000013973CPSF310097.222Capra_hircus
ENSODEG00000003129CPSF310096.930ENSTSYG00000002967CPSF310096.930Carlito_syrichta
ENSODEG00000003129CPSF39898.801ENSCAPG00000013851CPSF310098.801Cavia_aperea
ENSODEG00000003129CPSF310098.684ENSCPOG00000011299CPSF310098.684Cavia_porcellus
ENSODEG00000003129CPSF310096.930ENSCCAG00000036730CPSF310096.930Cebus_capucinus
ENSODEG00000003129CPSF310094.307ENSCATG00000014770CPSF39998.623Cercocebus_atys
ENSODEG00000003129CPSF310099.123ENSCLAG00000002727CPSF310099.123Chinchilla_lanigera
ENSODEG00000003129CPSF310089.181ENSCSAG00000007125CPSF310089.181Chlorocebus_sabaeus
ENSODEG00000003129CPSF386100.000ENSCHOG00000000180CPSF38570.526Choloepus_hoffmanni
ENSODEG00000003129CPSF39994.428ENSCPBG00000014074CPSF39994.428Chrysemys_picta_bellii
ENSODEG00000003129CPSF39967.496ENSCING00000007214-9867.496Ciona_intestinalis
ENSODEG00000003129CPSF310084.448ENSCANG00000034435CPSF310084.448Colobus_angolensis_palliatus
ENSODEG00000003129CPSF310096.930ENSCGRG00001013134Cpsf310096.930Cricetulus_griseus_chok1gshd
ENSODEG00000003129CPSF310096.930ENSCGRG00000018319Cpsf310096.930Cricetulus_griseus_crigri
ENSODEG00000003129CPSF39987.078ENSCSEG00000002021CPSF39986.862Cynoglossus_semilaevis
ENSODEG00000003129CPSF39988.235ENSCVAG00000015067CPSF39888.235Cyprinodon_variegatus
ENSODEG00000003129CPSF39988.235ENSDARG00000027649cpsf39888.235Danio_rerio
ENSODEG00000003129CPSF310095.766ENSDNOG00000008940CPSF39595.766Dasypus_novemcinctus
ENSODEG00000003129CPSF39597.081ENSDORG00000014263Cpsf310097.081Dipodomys_ordii
ENSODEG00000003129CPSF39967.158FBgn0261065Cpsf739867.158Drosophila_melanogaster
ENSODEG00000003129CPSF39583.564ENSETEG00000003893CPSF310083.564Echinops_telfairi
ENSODEG00000003129CPSF39977.937ENSEBUG00000009018cpsf39878.080Eptatretus_burgeri
ENSODEG00000003129CPSF310097.368ENSEASG00005003970CPSF310097.368Equus_asinus_asinus
ENSODEG00000003129CPSF310097.368ENSECAG00000019911CPSF310097.368Equus_caballus
ENSODEG00000003129CPSF310081.871ENSEEUG00000015422CPSF310081.871Erinaceus_europaeus
ENSODEG00000003129CPSF39988.088ENSELUG00000013775cpsf39888.088Esox_lucius
ENSODEG00000003129CPSF310097.222ENSFCAG00000007852CPSF310097.222Felis_catus
ENSODEG00000003129CPSF39593.663ENSFALG00000006572CPSF310093.663Ficedula_albicollis
ENSODEG00000003129CPSF39997.801ENSFDAG00000006317CPSF39997.801Fukomys_damarensis
ENSODEG00000003129CPSF35969.512ENSFHEG00000012186CPSF39969.512Fundulus_heteroclitus
ENSODEG00000003129CPSF39985.567ENSFHEG00000014774cpsf39885.567Fundulus_heteroclitus
ENSODEG00000003129CPSF39987.059ENSGMOG00000003157cpsf39887.059Gadus_morhua
ENSODEG00000003129CPSF39993.539ENSGALG00000016424CPSF39993.539Gallus_gallus
ENSODEG00000003129CPSF39988.218ENSGAFG00000008016CPSF39888.218Gambusia_affinis
ENSODEG00000003129CPSF39282.512ENSGAFG00000019449cpsf39982.512Gambusia_affinis
ENSODEG00000003129CPSF36892.505ENSGAGG00000025583CPSF39392.505Gopherus_agassizii
ENSODEG00000003129CPSF310094.707ENSGGOG00000001757CPSF310096.850Gorilla_gorilla
ENSODEG00000003129CPSF39986.050ENSHBUG00000001188cpsf39986.050Haplochromis_burtoni
ENSODEG00000003129CPSF35981.481ENSHBUG00000014332CPSF39981.481Haplochromis_burtoni
ENSODEG00000003129CPSF310097.953ENSHGLG00000000666CPSF39997.953Heterocephalus_glaber_female
ENSODEG00000003129CPSF310097.953ENSHGLG00100007765CPSF39997.953Heterocephalus_glaber_male
ENSODEG00000003129CPSF39985.630ENSHCOG00000007251cpsf39985.630Hippocampus_comes
ENSODEG00000003129CPSF39986.176ENSHCOG00000015957CPSF39786.176Hippocampus_comes
ENSODEG00000003129CPSF39987.059ENSIPUG00000023488cpsf39887.059Ictalurus_punctatus
ENSODEG00000003129CPSF310096.784ENSSTOG00000004476CPSF310096.784Ictidomys_tridecemlineatus
ENSODEG00000003129CPSF310095.760ENSJJAG00000023415Cpsf310095.760Jaculus_jaculus
ENSODEG00000003129CPSF39985.272ENSKMAG00000002806cpsf39885.272Kryptolebias_marmoratus
ENSODEG00000003129CPSF39988.088ENSKMAG00000007317CPSF39888.088Kryptolebias_marmoratus
ENSODEG00000003129CPSF35580.429ENSLBEG00000015018-9980.429Labrus_bergylta
ENSODEG00000003129CPSF39979.853ENSLBEG00000020569cpsf39479.853Labrus_bergylta
ENSODEG00000003129CPSF39588.889ENSLBEG00000013492CPSF39888.889Labrus_bergylta
ENSODEG00000003129CPSF39983.211ENSLACG00000008308CPSF39883.211Latimeria_chalumnae
ENSODEG00000003129CPSF39988.546ENSLOCG00000016823cpsf39888.546Lepisosteus_oculatus
ENSODEG00000003129CPSF39995.441ENSLAFG00000009467CPSF310095.441Loxodonta_africana
ENSODEG00000003129CPSF310096.930ENSMFAG00000001339CPSF310096.930Macaca_fascicularis
ENSODEG00000003129CPSF39596.754ENSMMUG00000018038CPSF310096.754Macaca_mulatta
ENSODEG00000003129CPSF310084.211ENSMNEG00000039447CPSF310084.211Macaca_nemestrina
ENSODEG00000003129CPSF310097.076ENSMLEG00000026825CPSF310097.076Mandrillus_leucophaeus
ENSODEG00000003129CPSF39985.862ENSMAMG00000003076cpsf39885.862Mastacembelus_armatus
ENSODEG00000003129CPSF39285.285ENSMAMG00000008835CPSF39985.285Mastacembelus_armatus
ENSODEG00000003129CPSF39988.529ENSMZEG00005006258CPSF39888.529Maylandia_zebra
ENSODEG00000003129CPSF39986.050ENSMZEG00005014358cpsf39986.050Maylandia_zebra
ENSODEG00000003129CPSF39893.403ENSMGAG00000013995CPSF310093.403Meleagris_gallopavo
ENSODEG00000003129CPSF35593.617ENSMAUG00000000166Cpsf310093.617Mesocricetus_auratus
ENSODEG00000003129CPSF310092.105ENSMICG00000002363CPSF310092.105Microcebus_murinus
ENSODEG00000003129CPSF310092.544ENSMOCG00000020067Cpsf310092.544Microtus_ochrogaster
ENSODEG00000003129CPSF39482.326ENSMMOG00000018212CPSF39882.326Mola_mola
ENSODEG00000003129CPSF38072.086ENSMMOG00000011923CPSF38478.214Mola_mola
ENSODEG00000003129CPSF310094.645ENSMODG00000014703CPSF310094.645Monodelphis_domestica
ENSODEG00000003129CPSF39986.197ENSMALG00000016416cpsf39986.197Monopterus_albus
ENSODEG00000003129CPSF39382.969ENSMALG00000011474CPSF39982.969Monopterus_albus
ENSODEG00000003129CPSF310096.637MGP_CAROLIEiJ_G0017640Cpsf310096.637Mus_caroli
ENSODEG00000003129CPSF310096.637ENSMUSG00000054309Cpsf310096.637Mus_musculus
ENSODEG00000003129CPSF310096.491MGP_PahariEiJ_G0029397Cpsf310096.491Mus_pahari
ENSODEG00000003129CPSF310096.637MGP_SPRETEiJ_G0018481Cpsf310096.637Mus_spretus
ENSODEG00000003129CPSF310096.784ENSMPUG00000013213CPSF310096.784Mustela_putorius_furo
ENSODEG00000003129CPSF310096.496ENSMLUG00000010636CPSF310096.496Myotis_lucifugus
ENSODEG00000003129CPSF310096.637ENSNGAG00000019836Cpsf310096.637Nannospalax_galili
ENSODEG00000003129CPSF39985.609ENSNBRG00000004770cpsf39985.609Neolamprologus_brichardi
ENSODEG00000003129CPSF39286.349ENSNBRG00000010525CPSF39986.349Neolamprologus_brichardi
ENSODEG00000003129CPSF310096.930ENSNLEG00000013359CPSF310096.930Nomascus_leucogenys
ENSODEG00000003129CPSF310063.889ENSMEUG00000013117-10063.889Notamacropus_eugenii
ENSODEG00000003129CPSF310087.719ENSOPRG00000008902CPSF310087.719Ochotona_princeps
ENSODEG00000003129CPSF39986.344ENSONIG00000018812cpsf39986.344Oreochromis_niloticus
ENSODEG00000003129CPSF38294.504ENSOANG00000008577CPSF310094.504Ornithorhynchus_anatinus
ENSODEG00000003129CPSF310096.784ENSOCUG00000003728CPSF310096.784Oryctolagus_cuniculus
ENSODEG00000003129CPSF39983.847ENSORLG00000018854cpsf39983.847Oryzias_latipes
ENSODEG00000003129CPSF39983.994ENSORLG00020013331cpsf39983.994Oryzias_latipes_hni
ENSODEG00000003129CPSF39983.847ENSORLG00015011017cpsf39983.847Oryzias_latipes_hsok
ENSODEG00000003129CPSF39983.994ENSOMEG00000010647cpsf39483.994Oryzias_melastigma
ENSODEG00000003129CPSF310087.135ENSOGAG00000001680CPSF310087.135Otolemur_garnettii
ENSODEG00000003129CPSF310097.222ENSOARG00000015073CPSF310097.222Ovis_aries
ENSODEG00000003129CPSF310097.076ENSPPAG00000042457CPSF310097.076Pan_paniscus
ENSODEG00000003129CPSF310096.930ENSPPRG00000016790CPSF310096.930Panthera_pardus
ENSODEG00000003129CPSF39996.912ENSPTIG00000003920CPSF310096.693Panthera_tigris_altaica
ENSODEG00000003129CPSF310097.076ENSPTRG00000011638CPSF310097.076Pan_troglodytes
ENSODEG00000003129CPSF310096.784ENSPANG00000016798CPSF310096.784Papio_anubis
ENSODEG00000003129CPSF39989.559ENSPKIG00000023646cpsf39989.302Paramormyrops_kingsleyae
ENSODEG00000003129CPSF39993.119ENSPSIG00000016144CPSF310093.119Pelodiscus_sinensis
ENSODEG00000003129CPSF35979.012ENSPMGG00000015311CPSF39979.012Periophthalmus_magnuspinnatus
ENSODEG00000003129CPSF38385.515ENSPMGG00000006141-9985.515Periophthalmus_magnuspinnatus
ENSODEG00000003129CPSF310096.637ENSPEMG00000017668Cpsf310096.637Peromyscus_maniculatus_bairdii
ENSODEG00000003129CPSF37890.317ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSODEG00000003129CPSF39895.802ENSPCIG00000009823CPSF39896.012Phascolarctos_cinereus
ENSODEG00000003129CPSF39988.071ENSPFOG00000010418-9888.071Poecilia_formosa
ENSODEG00000003129CPSF39984.604ENSPFOG00000015922cpsf39984.604Poecilia_formosa
ENSODEG00000003129CPSF39984.604ENSPLAG00000000882cpsf39984.604Poecilia_latipinna
ENSODEG00000003129CPSF35980.941ENSPLAG00000021300-9980.941Poecilia_latipinna
ENSODEG00000003129CPSF39984.751ENSPMEG00000018309cpsf39984.751Poecilia_mexicana
ENSODEG00000003129CPSF39982.769ENSPREG00000004482CPSF39882.769Poecilia_reticulata
ENSODEG00000003129CPSF39282.671ENSPREG00000014875cpsf39982.671Poecilia_reticulata
ENSODEG00000003129CPSF310092.544ENSPPYG00000012666CPSF310092.544Pongo_abelii
ENSODEG00000003129CPSF39562.519ENSPCAG00000015042CPSF310062.519Procavia_capensis
ENSODEG00000003129CPSF38891.844ENSPCOG00000023016CPSF39891.844Propithecus_coquereli
ENSODEG00000003129CPSF39997.067ENSPVAG00000005324CPSF39997.067Pteropus_vampyrus
ENSODEG00000003129CPSF39986.050ENSPNYG00000004405cpsf39986.050Pundamilia_nyererei
ENSODEG00000003129CPSF37991.513ENSPNYG00000021047CPSF39091.513Pundamilia_nyererei
ENSODEG00000003129CPSF39987.647ENSPNAG00000023060cpsf39887.647Pygocentrus_nattereri
ENSODEG00000003129CPSF39996.628ENSRNOG00000052418Cpsf39996.628Rattus_norvegicus
ENSODEG00000003129CPSF310091.082ENSRBIG00000041615CPSF39992.272Rhinopithecus_bieti
ENSODEG00000003129CPSF310097.076ENSRROG00000033792CPSF310097.076Rhinopithecus_roxellana
ENSODEG00000003129CPSF39340.537YLR277CYSH19540.537Saccharomyces_cerevisiae
ENSODEG00000003129CPSF310090.725ENSSBOG00000027263CPSF310090.725Saimiri_boliviensis_boliviensis
ENSODEG00000003129CPSF310096.053ENSSHAG00000007024CPSF310096.053Sarcophilus_harrisii
ENSODEG00000003129CPSF39989.427ENSSFOG00015002108cpsf39989.427Scleropages_formosus
ENSODEG00000003129CPSF39587.519ENSSMAG00000020534CPSF39587.519Scophthalmus_maximus
ENSODEG00000003129CPSF39988.382ENSSDUG00000018498CPSF39888.382Seriola_dumerili
ENSODEG00000003129CPSF39986.637ENSSDUG00000002828cpsf39686.637Seriola_dumerili
ENSODEG00000003129CPSF39986.637ENSSLDG00000008469cpsf39191.695Seriola_lalandi_dorsalis
ENSODEG00000003129CPSF39988.382ENSSLDG00000005234CPSF39888.382Seriola_lalandi_dorsalis
ENSODEG00000003129CPSF310079.532ENSSARG00000005186CPSF310079.532Sorex_araneus
ENSODEG00000003129CPSF39891.356ENSSPUG00000015525CPSF39791.356Sphenodon_punctatus
ENSODEG00000003129CPSF39988.088ENSSPAG00000002906CPSF39888.088Stegastes_partitus
ENSODEG00000003129CPSF39986.156ENSSPAG00000018579cpsf39886.156Stegastes_partitus
ENSODEG00000003129CPSF39997.511ENSSSCG00000020799CPSF39997.511Sus_scrofa
ENSODEG00000003129CPSF39993.833ENSTGUG00000013016CPSF39993.833Taeniopygia_guttata
ENSODEG00000003129CPSF39985.441ENSTRUG00000007030cpsf39785.441Takifugu_rubripes
ENSODEG00000003129CPSF35973.219ENSTRUG00000013905CPSF39973.219Takifugu_rubripes
ENSODEG00000003129CPSF38593.425ENSTBEG00000002707CPSF38593.425Tupaia_belangeri
ENSODEG00000003129CPSF38890.860ENSTTRG00000000861CPSF38890.860Tursiops_truncatus
ENSODEG00000003129CPSF39697.412ENSUAMG00000007535CPSF39497.412Ursus_americanus
ENSODEG00000003129CPSF39597.218ENSUMAG00000003676CPSF310097.218Ursus_maritimus
ENSODEG00000003129CPSF39394.479ENSVPAG00000008041CPSF310094.479Vicugna_pacos
ENSODEG00000003129CPSF310097.368ENSVVUG00000002194CPSF310097.368Vulpes_vulpes
ENSODEG00000003129CPSF39989.868ENSXETG00000008263cpsf39889.868Xenopus_tropicalis
ENSODEG00000003129CPSF35478.976ENSXCOG00000000957-8778.976Xiphophorus_couchianus
ENSODEG00000003129CPSF39984.604ENSXCOG00000019695cpsf39984.604Xiphophorus_couchianus
ENSODEG00000003129CPSF39987.923ENSXMAG00000027291CPSF39887.923Xiphophorus_maculatus
ENSODEG00000003129CPSF39984.604ENSXMAG00000009784cpsf39984.604Xiphophorus_maculatus

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