EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000003465 (Gene tree)
Gene ID: 101583462
Gene Symbol: PUM1
Alias: -
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 136235 bases
Position: chrJH651678.1:4575586-4711820
Accession: 101583462
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	1	8
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	2	8
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	3	8
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	4	8
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	5	8
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	6	8
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	7	8
ENSODEP00000004546	PUF	PF00806.19	1.6e-70	8	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	1	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	2	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	3	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	4	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	5	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	6	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	7	8
ENSODEP00000004545	PUF	PF00806.19	1.4e-69	8	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	1	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	2	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	3	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	4	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	5	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	6	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	7	8
ENSODEP00000004544	PUF	PF00806.19	3e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000004632	PUM1-203	2832	XM_004642922	ENSODEP00000004546	943 (aa)	XP_004642979	UPI000333C594
ENSODET00000004631	PUM1-202	3276	XM_004642920	ENSODEP00000004545	1091 (aa)	XP_004642977	UPI000334160F
ENSODET00000004630	PUM1-201	4147	XM_004642915	ENSODEP00000004544	1187 (aa)	XP_004642972	UPI0003338187

Gene Model

Click here to download ENSODEG00000003465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000003465's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000003465	PUM1	88	83.407	ENSODEG00000007823	PUM2	100	88.164

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000003465	PUM1	100	99.242	ENSG00000134644	PUM1	100	99.242	Homo_sapiens
ENSODEG00000003465	PUM1	90	91.325	ENSAPOG00000021632	pum1	100	79.441	Acanthochromis_polyacanthus
ENSODEG00000003465	PUM1	100	98.739	ENSAMEG00000017656	PUM1	97	98.739	Ailuropoda_melanoleuca
ENSODEG00000003465	PUM1	100	81.064	ENSACIG00000021013	pum1	100	76.325	Amphilophus_citrinellus
ENSODEG00000003465	PUM1	90	91.325	ENSAOCG00000003944	pum1	100	79.441	Amphiprion_ocellaris
ENSODEG00000003465	PUM1	90	91.325	ENSAPEG00000014550	pum1	100	79.441	Amphiprion_percula
ENSODEG00000003465	PUM1	100	81.064	ENSATEG00000016004	pum1	100	79.441	Anabas_testudineus
ENSODEG00000003465	PUM1	100	97.637	ENSAPLG00000009351	PUM1	100	97.225	Anas_platyrhynchos
ENSODEG00000003465	PUM1	100	95.766	ENSACAG00000000682	PUM1	98	95.370	Anolis_carolinensis
ENSODEG00000003465	PUM1	100	98.835	ENSANAG00000027865	PUM1	100	98.835	Aotus_nancymaae
ENSODEG00000003465	PUM1	90	76.552	ENSACLG00000019354	pum1	100	78.816	Astatotilapia_calliptera
ENSODEG00000003465	PUM1	100	84.491	ENSAMXG00000020607	pum1	96	79.097	Astyanax_mexicanus
ENSODEG00000003465	PUM1	100	98.901	ENSBTAG00000018979	PUM1	100	99.275	Bos_taurus
ENSODEG00000003465	PUM1	100	98.907	ENSCJAG00000006035	PUM1	100	99.034	Callithrix_jacchus
ENSODEG00000003465	PUM1	100	98.611	ENSCAFG00000011205	PUM1	100	96.552	Canis_familiaris
ENSODEG00000003465	PUM1	92	96.815	ENSCAFG00020024616	PUM1	99	98.197	Canis_lupus_dingo
ENSODEG00000003465	PUM1	100	98.822	ENSCHIG00000012952	PUM1	100	98.822	Capra_hircus
ENSODEG00000003465	PUM1	100	98.823	ENSTSYG00000008868	PUM1	100	98.823	Carlito_syrichta
ENSODEG00000003465	PUM1	100	99.576	ENSCPOG00000031613	PUM1	100	99.576	Cavia_porcellus
ENSODEG00000003465	PUM1	100	99.176	ENSCATG00000017991	PUM1	100	99.517	Cercocebus_atys
ENSODEG00000003465	PUM1	100	99.634	ENSCLAG00000007662	PUM1	100	99.634	Chinchilla_lanigera
ENSODEG00000003465	PUM1	100	98.611	ENSCSAG00000001028	PUM1	100	98.250	Chlorocebus_sabaeus
ENSODEG00000003465	PUM1	92	98.611	ENSCHOG00000010245	PUM1	93	96.259	Choloepus_hoffmanni
ENSODEG00000003465	PUM1	100	97.385	ENSCPBG00000009288	PUM1	100	97.585	Chrysemys_picta_bellii
ENSODEG00000003465	PUM1	100	99.242	ENSCANG00000042606	PUM1	100	99.047	Colobus_angolensis_palliatus
ENSODEG00000003465	PUM1	100	98.718	ENSCGRG00001024949	Pum1	100	98.718	Cricetulus_griseus_chok1gshd
ENSODEG00000003465	PUM1	100	98.718	ENSCGRG00000014197	Pum1	100	98.718	Cricetulus_griseus_crigri
ENSODEG00000003465	PUM1	90	75.811	ENSCSEG00000015981	pum1	100	77.891	Cynoglossus_semilaevis
ENSODEG00000003465	PUM1	100	80.569	ENSCVAG00000007043	pum1	100	75.537	Cyprinodon_variegatus
ENSODEG00000003465	PUM1	100	84.367	ENSDARG00000099256	pum1	100	79.181	Danio_rerio
ENSODEG00000003465	PUM1	100	98.611	ENSDNOG00000010939	PUM1	100	98.570	Dasypus_novemcinctus
ENSODEG00000003465	PUM1	85	99.517	ENSDORG00000001875	Pum1	100	99.517	Dipodomys_ordii
ENSODEG00000003465	PUM1	85	100.000	ENSETEG00000004355	PUM1	87	93.457	Echinops_telfairi
ENSODEG00000003465	PUM1	100	98.653	ENSEASG00005010813	PUM1	100	98.653	Equus_asinus_asinus
ENSODEG00000003465	PUM1	100	98.486	ENSECAG00000021369	PUM1	100	98.486	Equus_caballus
ENSODEG00000003465	PUM1	80	99.383	ENSEEUG00000003871	PUM1	74	99.383	Erinaceus_europaeus
ENSODEG00000003465	PUM1	100	83.109	ENSELUG00000002409	pum1	100	83.292	Esox_lucius
ENSODEG00000003465	PUM1	100	98.991	ENSFCAG00000010374	PUM1	100	99.275	Felis_catus
ENSODEG00000003465	PUM1	100	96.044	ENSFALG00000001214	PUM1	97	94.556	Ficedula_albicollis
ENSODEG00000003465	PUM1	100	99.359	ENSFDAG00000011319	PUM1	100	99.359	Fukomys_damarensis
ENSODEG00000003465	PUM1	70	88.023	ENSGMOG00000010491	pum1	100	74.587	Gadus_morhua
ENSODEG00000003465	PUM1	100	97.761	ENSGALG00000042598	PUM1	100	97.438	Gallus_gallus
ENSODEG00000003465	PUM1	100	80.693	ENSGAFG00000015617	pum1	100	90.120	Gambusia_affinis
ENSODEG00000003465	PUM1	100	80.788	ENSGACG00000005717	pum1	100	76.112	Gasterosteus_aculeatus
ENSODEG00000003465	PUM1	100	97.264	ENSGAGG00000001290	PUM1	100	96.972	Gopherus_agassizii
ENSODEG00000003465	PUM1	100	99.242	ENSGGOG00000011983	PUM1	100	99.176	Gorilla_gorilla
ENSODEG00000003465	PUM1	100	80.817	ENSHBUG00000018718	pum1	100	76.116	Haplochromis_burtoni
ENSODEG00000003465	PUM1	100	99.306	ENSHGLG00000013819	Pum1	100	99.306	Heterocephalus_glaber_female
ENSODEG00000003465	PUM1	100	99.306	ENSHGLG00100008621	Pum1	100	99.306	Heterocephalus_glaber_male
ENSODEG00000003465	PUM1	100	82.635	ENSIPUG00000020421	pum1	100	77.805	Ictalurus_punctatus
ENSODEG00000003465	PUM1	100	99.327	ENSSTOG00000010757	PUM1	100	99.327	Ictidomys_tridecemlineatus
ENSODEG00000003465	PUM1	100	98.906	ENSJJAG00000000530	Pum1	100	98.906	Jaculus_jaculus
ENSODEG00000003465	PUM1	100	80.198	ENSKMAG00000003481	pum1	100	75.702	Kryptolebias_marmoratus
ENSODEG00000003465	PUM1	100	80.173	ENSLBEG00000002527	pum1	100	75.331	Labrus_bergylta
ENSODEG00000003465	PUM1	100	88.228	ENSLACG00000017188	PUM1	99	86.261	Latimeria_chalumnae
ENSODEG00000003465	PUM1	100	91.304	ENSLOCG00000005210	pum1	99	87.990	Lepisosteus_oculatus
ENSODEG00000003465	PUM1	100	98.318	ENSLAFG00000003178	PUM1	100	98.318	Loxodonta_africana
ENSODEG00000003465	PUM1	100	99.176	ENSMFAG00000010291	PUM1	100	99.517	Macaca_fascicularis
ENSODEG00000003465	PUM1	100	99.176	ENSMMUG00000013520	PUM1	100	99.176	Macaca_mulatta
ENSODEG00000003465	PUM1	100	99.242	ENSMNEG00000034639	PUM1	100	99.242	Macaca_nemestrina
ENSODEG00000003465	PUM1	100	99.242	ENSMLEG00000038743	PUM1	100	99.047	Mandrillus_leucophaeus
ENSODEG00000003465	PUM1	100	80.817	ENSMAMG00000011606	pum1	100	76.198	Mastacembelus_armatus
ENSODEG00000003465	PUM1	100	80.817	ENSMZEG00005005834	pum1	100	76.116	Maylandia_zebra
ENSODEG00000003465	PUM1	100	97.388	ENSMGAG00000000724	PUM1	100	97.164	Meleagris_gallopavo
ENSODEG00000003465	PUM1	100	98.810	ENSMAUG00000022090	Pum1	100	98.810	Mesocricetus_auratus
ENSODEG00000003465	PUM1	99	96.630	ENSMICG00000012213	-	99	96.630	Microcebus_murinus
ENSODEG00000003465	PUM1	100	98.823	ENSMICG00000007713	-	100	98.823	Microcebus_murinus
ENSODEG00000003465	PUM1	100	98.823	ENSMOCG00000015463	Pum1	100	98.823	Microtus_ochrogaster
ENSODEG00000003465	PUM1	90	88.046	ENSMMOG00000019817	pum1	100	90.602	Mola_mola
ENSODEG00000003465	PUM1	100	97.484	ENSMODG00000017067	PUM1	100	97.479	Monodelphis_domestica
ENSODEG00000003465	PUM1	90	88.276	ENSMALG00000016399	pum1	100	90.843	Monopterus_albus
ENSODEG00000003465	PUM1	100	98.653	MGP_CAROLIEiJ_G0026549	Pum1	100	98.653	Mus_caroli
ENSODEG00000003465	PUM1	100	98.906	ENSMUSG00000028580	Pum1	100	98.906	Mus_musculus
ENSODEG00000003465	PUM1	100	98.737	MGP_PahariEiJ_G0028881	Pum1	100	98.737	Mus_pahari
ENSODEG00000003465	PUM1	100	98.822	MGP_SPRETEiJ_G0027529	Pum1	100	98.822	Mus_spretus
ENSODEG00000003465	PUM1	100	98.611	ENSMPUG00000015454	PUM1	100	98.569	Mustela_putorius_furo
ENSODEG00000003465	PUM1	100	98.611	ENSMLUG00000006490	PUM1	100	98.570	Myotis_lucifugus
ENSODEG00000003465	PUM1	100	99.158	ENSNGAG00000002378	Pum1	100	99.158	Nannospalax_galili
ENSODEG00000003465	PUM1	100	78.138	ENSNBRG00000010689	pum1	100	83.210	Neolamprologus_brichardi
ENSODEG00000003465	PUM1	100	97.917	ENSNLEG00000001151	PUM1	100	97.917	Nomascus_leucogenys
ENSODEG00000003465	PUM1	80	100.000	ENSMEUG00000000976	-	75	97.297	Notamacropus_eugenii
ENSODEG00000003465	PUM1	84	100.000	ENSOPRG00000001776	PUM1	73	100.000	Ochotona_princeps
ENSODEG00000003465	PUM1	100	81.373	ENSONIG00000002290	pum1	100	76.446	Oreochromis_niloticus
ENSODEG00000003465	PUM1	81	77.561	ENSOANG00000004902	-	100	77.561	Ornithorhynchus_anatinus
ENSODEG00000003465	PUM1	100	98.611	ENSOCUG00000008641	PUM1	99	98.486	Oryctolagus_cuniculus
ENSODEG00000003465	PUM1	100	81.683	ENSORLG00000011482	pum1	100	75.535	Oryzias_latipes
ENSODEG00000003465	PUM1	100	81.807	ENSORLG00020019461	pum1	100	75.535	Oryzias_latipes_hni
ENSODEG00000003465	PUM1	100	81.807	ENSORLG00015011375	pum1	100	75.618	Oryzias_latipes_hsok
ENSODEG00000003465	PUM1	90	92.530	ENSOMEG00000009312	pum1	100	78.842	Oryzias_melastigma
ENSODEG00000003465	PUM1	100	97.917	ENSOGAG00000011063	PUM1	100	96.138	Otolemur_garnettii
ENSODEG00000003465	PUM1	100	98.611	ENSOARG00000001899	PUM1	100	98.792	Ovis_aries
ENSODEG00000003465	PUM1	100	99.242	ENSPPAG00000044003	PUM1	100	99.176	Pan_paniscus
ENSODEG00000003465	PUM1	100	99.074	ENSPPRG00000001370	PUM1	100	98.835	Panthera_pardus
ENSODEG00000003465	PUM1	100	98.906	ENSPTIG00000010798	PUM1	100	98.623	Panthera_tigris_altaica
ENSODEG00000003465	PUM1	100	99.242	ENSPTRG00000000453	PUM1	100	99.176	Pan_troglodytes
ENSODEG00000003465	PUM1	100	99.242	ENSPANG00000016338	PUM1	100	99.517	Papio_anubis
ENSODEG00000003465	PUM1	100	82.497	ENSPKIG00000010578	pum1	100	78.329	Paramormyrops_kingsleyae
ENSODEG00000003465	PUM1	100	97.631	ENSPSIG00000014118	PUM1	100	97.475	Pelodiscus_sinensis
ENSODEG00000003465	PUM1	100	76.715	ENSPMGG00000005836	pum1	100	81.907	Periophthalmus_magnuspinnatus
ENSODEG00000003465	PUM1	100	98.823	ENSPEMG00000010009	Pum1	100	98.823	Peromyscus_maniculatus_bairdii
ENSODEG00000003465	PUM1	100	97.731	ENSPCIG00000014151	PUM1	100	97.761	Phascolarctos_cinereus
ENSODEG00000003465	PUM1	93	83.498	ENSPFOG00000007289	pum1	99	81.498	Poecilia_formosa
ENSODEG00000003465	PUM1	100	82.593	ENSPLAG00000007256	pum1	100	77.617	Poecilia_latipinna
ENSODEG00000003465	PUM1	85	82.716	ENSPMEG00000019543	pum1	99	77.829	Poecilia_mexicana
ENSODEG00000003465	PUM1	100	80.693	ENSPREG00000005195	pum1	100	80.727	Poecilia_reticulata
ENSODEG00000003465	PUM1	100	98.755	ENSPPYG00000001621	PUM1	100	97.277	Pongo_abelii
ENSODEG00000003465	PUM1	84	98.765	ENSPCAG00000001979	PUM1	74	98.765	Procavia_capensis
ENSODEG00000003465	PUM1	100	98.823	ENSPCOG00000004398	PUM1	100	98.823	Propithecus_coquereli
ENSODEG00000003465	PUM1	100	98.611	ENSPVAG00000005207	PUM1	97	96.886	Pteropus_vampyrus
ENSODEG00000003465	PUM1	100	80.817	ENSPNYG00000009518	pum1	100	76.198	Pundamilia_nyererei
ENSODEG00000003465	PUM1	100	84.739	ENSPNAG00000026728	pum1	100	80.585	Pygocentrus_nattereri
ENSODEG00000003465	PUM1	100	98.876	ENSRNOG00000011709	Pum1	100	98.737	Rattus_norvegicus
ENSODEG00000003465	PUM1	100	99.242	ENSRBIG00000042521	PUM1	100	99.517	Rhinopithecus_bieti
ENSODEG00000003465	PUM1	100	99.242	ENSRROG00000020156	PUM1	100	99.074	Rhinopithecus_roxellana
ENSODEG00000003465	PUM1	100	98.993	ENSSBOG00000032037	PUM1	100	99.034	Saimiri_boliviensis_boliviensis
ENSODEG00000003465	PUM1	100	97.563	ENSSHAG00000010918	PUM1	100	97.563	Sarcophilus_harrisii
ENSODEG00000003465	PUM1	100	80.817	ENSSMAG00000010918	pum1	100	90.843	Scophthalmus_maximus
ENSODEG00000003465	PUM1	100	80.941	ENSSDUG00000009021	pum1	100	76.446	Seriola_dumerili
ENSODEG00000003465	PUM1	100	80.941	ENSSLDG00000009667	pum1	100	78.549	Seriola_lalandi_dorsalis
ENSODEG00000003465	PUM1	99	98.611	ENSSARG00000003055	PUM1	91	99.115	Sorex_araneus
ENSODEG00000003465	PUM1	100	97.634	ENSSPUG00000006267	PUM1	100	96.886	Sphenodon_punctatus
ENSODEG00000003465	PUM1	100	81.064	ENSSPAG00000016636	pum1	100	79.441	Stegastes_partitus
ENSODEG00000003465	PUM1	100	99.084	ENSSSCG00000003591	PUM1	100	99.275	Sus_scrofa
ENSODEG00000003465	PUM1	100	80.693	ENSTRUG00000013121	pum1	100	82.840	Takifugu_rubripes
ENSODEG00000003465	PUM1	100	80.593	ENSTNIG00000016983	pum1	99	76.349	Tetraodon_nigroviridis
ENSODEG00000003465	PUM1	87	96.341	ENSTBEG00000013810	PUM1	89	96.341	Tupaia_belangeri
ENSODEG00000003465	PUM1	92	98.996	ENSTTRG00000007436	PUM1	90	98.996	Tursiops_truncatus
ENSODEG00000003465	PUM1	99	98.432	ENSUAMG00000018262	-	100	98.432	Ursus_americanus
ENSODEG00000003465	PUM1	95	99.275	ENSUMAG00000009211	PUM1	100	99.275	Ursus_maritimus
ENSODEG00000003465	PUM1	100	98.630	ENSVPAG00000005902	PUM1	92	99.004	Vicugna_pacos
ENSODEG00000003465	PUM1	100	98.823	ENSVVUG00000014631	PUM1	100	99.275	Vulpes_vulpes
ENSODEG00000003465	PUM1	100	88.199	ENSXETG00000012904	pum1	99	87.070	Xenopus_tropicalis
ENSODEG00000003465	PUM1	100	80.693	ENSXMAG00000002945	pum1	100	77.824	Xiphophorus_maculatus