EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000003542 (Gene tree)
Gene ID: 101572089
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 78315 bases
Position: chrJH651677.1:2173213-2251527
Accession: 101572089
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000004644	RNA_pol_Rpb1_5	PF04998.17	9.2e-104	1	1
ENSODEP00000004644	RNA_pol_Rpb1_4	PF05000.17	1.9e-25	1	1
ENSODEP00000004644	RNA_pol_Rpb1_2	PF00623.20	4.3e-69	1	1
ENSODEP00000004644	RNA_pol_Rpb1_3	PF04983.18	3.1e-37	1	1
ENSODEP00000004644	RNA_pol_Rpb1_1	PF04997.12	3.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000004732	POLR1A-201	5145	XM_004642797	ENSODEP00000004644	1714 (aa)	XP_004642855	UPI0003340A5D

Gene Model

Click here to download ENSODEG00000003542's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000003542's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000003542	POLR1A	69	32.438	ENSODEG00000015146	POLR3A	78	32.438
ENSODEG00000003542	POLR1A	76	38.060	ENSODEG00000017674	-	52	38.060

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000003542	POLR1A	100	89.024	ENSG00000068654	POLR1A	100	89.199	Homo_sapiens
ENSODEG00000003542	POLR1A	69	67.479	ENSAPOG00000017945	polr1a	99	67.479	Acanthochromis_polyacanthus
ENSODEG00000003542	POLR1A	100	89.483	ENSAMEG00000005807	POLR1A	100	92.316	Ailuropoda_melanoleuca
ENSODEG00000003542	POLR1A	100	63.933	ENSACIG00000022147	polr1a	100	63.779	Amphilophus_citrinellus
ENSODEG00000003542	POLR1A	100	66.106	ENSAOCG00000017336	polr1a	100	67.581	Amphiprion_ocellaris
ENSODEG00000003542	POLR1A	94	72.917	ENSAPEG00000016105	polr1a	98	72.917	Amphiprion_percula
ENSODEG00000003542	POLR1A	100	65.587	ENSATEG00000016773	polr1a	100	65.916	Anabas_testudineus
ENSODEG00000003542	POLR1A	86	72.279	ENSAPLG00000013871	POLR1A	99	72.079	Anas_platyrhynchos
ENSODEG00000003542	POLR1A	99	68.699	ENSACAG00000012141	POLR1A	99	67.977	Anolis_carolinensis
ENSODEG00000003542	POLR1A	100	88.146	ENSANAG00000033927	POLR1A	100	88.146	Aotus_nancymaae
ENSODEG00000003542	POLR1A	100	62.950	ENSACLG00000020541	polr1a	100	62.536	Astatotilapia_calliptera
ENSODEG00000003542	POLR1A	100	88.488	ENSBTAG00000006481	POLR1A	100	88.663	Bos_taurus
ENSODEG00000003542	POLR1A	99	38.397	WBGene00012999	rpoa-1	98	37.993	Caenorhabditis_elegans
ENSODEG00000003542	POLR1A	100	87.340	ENSCJAG00000019547	POLR1A	100	87.863	Callithrix_jacchus
ENSODEG00000003542	POLR1A	100	89.360	ENSCAFG00000007613	POLR1A	100	89.070	Canis_familiaris
ENSODEG00000003542	POLR1A	100	89.379	ENSCAFG00020014752	POLR1A	100	89.089	Canis_lupus_dingo
ENSODEG00000003542	POLR1A	100	87.602	ENSCHIG00000018204	POLR1A	100	87.544	Capra_hircus
ENSODEG00000003542	POLR1A	100	86.535	ENSTSYG00000002761	POLR1A	100	86.361	Carlito_syrichta
ENSODEG00000003542	POLR1A	97	89.826	ENSCAPG00000010132	POLR1A	100	89.808	Cavia_aperea
ENSODEG00000003542	POLR1A	100	94.807	ENSCPOG00000012350	POLR1A	100	94.807	Cavia_porcellus
ENSODEG00000003542	POLR1A	100	88.037	ENSCCAG00000019839	POLR1A	100	88.560	Cebus_capucinus
ENSODEG00000003542	POLR1A	100	89.431	ENSCATG00000029786	POLR1A	100	89.605	Cercocebus_atys
ENSODEG00000003542	POLR1A	100	95.986	ENSCLAG00000005187	POLR1A	100	95.986	Chinchilla_lanigera
ENSODEG00000003542	POLR1A	100	89.141	ENSCSAG00000016251	POLR1A	100	89.605	Chlorocebus_sabaeus
ENSODEG00000003542	POLR1A	99	74.197	ENSCPBG00000001115	POLR1A	99	74.256	Chrysemys_picta_bellii
ENSODEG00000003542	POLR1A	99	46.123	ENSCSAVG00000007184	-	91	54.591	Ciona_savignyi
ENSODEG00000003542	POLR1A	100	86.535	ENSCANG00000031785	POLR1A	100	86.477	Colobus_angolensis_palliatus
ENSODEG00000003542	POLR1A	100	84.759	ENSCGRG00001006651	Polr1a	100	84.526	Cricetulus_griseus_chok1gshd
ENSODEG00000003542	POLR1A	60	88.986	ENSCGRG00000010834	Polr1a	100	88.596	Cricetulus_griseus_crigri
ENSODEG00000003542	POLR1A	100	62.340	ENSCSEG00000020190	polr1a	100	62.304	Cynoglossus_semilaevis
ENSODEG00000003542	POLR1A	100	64.873	ENSCVAG00000020941	polr1a	100	64.702	Cyprinodon_variegatus
ENSODEG00000003542	POLR1A	100	66.551	ENSDARG00000098375	polr1a	100	66.376	Danio_rerio
ENSODEG00000003542	POLR1A	100	82.093	ENSDNOG00000010829	POLR1A	100	82.093	Dasypus_novemcinctus
ENSODEG00000003542	POLR1A	100	89.437	ENSDORG00000008298	Polr1a	100	88.973	Dipodomys_ordii
ENSODEG00000003542	POLR1A	72	93.750	ENSETEG00000000412	-	72	93.750	Echinops_telfairi
ENSODEG00000003542	POLR1A	89	47.745	ENSEBUG00000005667	-	99	47.511	Eptatretus_burgeri
ENSODEG00000003542	POLR1A	100	89.954	ENSEASG00005001625	POLR1A	100	90.476	Equus_asinus_asinus
ENSODEG00000003542	POLR1A	100	89.895	ENSECAG00000010092	POLR1A	100	92.739	Equus_caballus
ENSODEG00000003542	POLR1A	100	89.895	ENSECAG00000030510	-	100	92.739	Equus_caballus
ENSODEG00000003542	POLR1A	100	89.895	ENSECAG00000036306	-	100	92.739	Equus_caballus
ENSODEG00000003542	POLR1A	85	92.810	ENSEEUG00000000676	POLR1A	85	92.810	Erinaceus_europaeus
ENSODEG00000003542	POLR1A	100	67.288	ENSELUG00000012769	polr1a	99	67.288	Esox_lucius
ENSODEG00000003542	POLR1A	100	89.425	ENSFCAG00000008966	POLR1A	100	89.309	Felis_catus
ENSODEG00000003542	POLR1A	99	71.209	ENSFALG00000010082	POLR1A	99	70.926	Ficedula_albicollis
ENSODEG00000003542	POLR1A	100	94.107	ENSFDAG00000013726	POLR1A	100	93.816	Fukomys_damarensis
ENSODEG00000003542	POLR1A	100	61.963	ENSFHEG00000005996	polr1a	100	62.129	Fundulus_heteroclitus
ENSODEG00000003542	POLR1A	100	60.117	ENSGMOG00000002230	polr1a	100	60.000	Gadus_morhua
ENSODEG00000003542	POLR1A	90	69.077	ENSGALG00000038160	-	99	69.072	Gallus_gallus
ENSODEG00000003542	POLR1A	100	64.419	ENSGAFG00000015266	polr1a	100	64.137	Gambusia_affinis
ENSODEG00000003542	POLR1A	100	64.706	ENSGACG00000018791	polr1a	100	64.261	Gasterosteus_aculeatus
ENSODEG00000003542	POLR1A	89	74.967	ENSGAGG00000004984	-	95	80.534	Gopherus_agassizii
ENSODEG00000003542	POLR1A	100	88.966	ENSGGOG00000001788	POLR1A	100	89.141	Gorilla_gorilla
ENSODEG00000003542	POLR1A	90	64.552	ENSHBUG00000020021	polr1a	99	64.753	Haplochromis_burtoni
ENSODEG00000003542	POLR1A	100	94.399	ENSHGLG00000006334	POLR1A	100	93.932	Heterocephalus_glaber_female
ENSODEG00000003542	POLR1A	100	94.124	ENSHGLG00100006614	POLR1A	100	93.659	Heterocephalus_glaber_male
ENSODEG00000003542	POLR1A	100	62.500	ENSHCOG00000003345	polr1a	100	62.133	Hippocampus_comes
ENSODEG00000003542	POLR1A	100	65.641	ENSIPUG00000013174	polr1a	100	65.119	Ictalurus_punctatus
ENSODEG00000003542	POLR1A	100	87.981	ENSSTOG00000012580	POLR1A	100	87.755	Ictidomys_tridecemlineatus
ENSODEG00000003542	POLR1A	100	89.983	ENSJJAG00000013113	Polr1a	100	89.750	Jaculus_jaculus
ENSODEG00000003542	POLR1A	100	65.445	ENSKMAG00000007399	polr1a	100	65.096	Kryptolebias_marmoratus
ENSODEG00000003542	POLR1A	94	68.803	ENSLBEG00000015401	polr1a	99	68.296	Labrus_bergylta
ENSODEG00000003542	POLR1A	53	76.630	ENSLACG00000003218	polr1a	100	76.630	Latimeria_chalumnae
ENSODEG00000003542	POLR1A	100	70.841	ENSLOCG00000010881	polr1a	100	70.841	Lepisosteus_oculatus
ENSODEG00000003542	POLR1A	100	87.761	ENSLAFG00000014948	POLR1A	100	87.877	Loxodonta_africana
ENSODEG00000003542	POLR1A	100	89.082	ENSMFAG00000046097	POLR1A	100	89.547	Macaca_fascicularis
ENSODEG00000003542	POLR1A	100	88.966	ENSMMUG00000015815	POLR1A	100	89.431	Macaca_mulatta
ENSODEG00000003542	POLR1A	100	89.082	ENSMNEG00000043313	POLR1A	100	89.547	Macaca_nemestrina
ENSODEG00000003542	POLR1A	100	88.560	ENSMLEG00000042428	POLR1A	100	89.024	Mandrillus_leucophaeus
ENSODEG00000003542	POLR1A	100	66.318	ENSMAMG00000016565	polr1a	100	65.852	Mastacembelus_armatus
ENSODEG00000003542	POLR1A	100	66.299	ENSMZEG00005004915	polr1a	100	66.049	Maylandia_zebra
ENSODEG00000003542	POLR1A	99	69.244	ENSMGAG00000013111	POLR1A	99	69.302	Meleagris_gallopavo
ENSODEG00000003542	POLR1A	92	89.778	ENSMAUG00000008497	Polr1a	100	89.714	Mesocricetus_auratus
ENSODEG00000003542	POLR1A	100	88.921	ENSMICG00000000757	POLR1A	100	88.805	Microcebus_murinus
ENSODEG00000003542	POLR1A	100	88.966	ENSMOCG00000000122	Polr1a	100	88.850	Microtus_ochrogaster
ENSODEG00000003542	POLR1A	100	65.273	ENSMMOG00000010216	polr1a	100	65.583	Mola_mola
ENSODEG00000003542	POLR1A	100	74.136	ENSMODG00000009335	POLR1A	100	74.033	Monodelphis_domestica
ENSODEG00000003542	POLR1A	100	65.525	ENSMALG00000013363	polr1a	100	65.197	Monopterus_albus
ENSODEG00000003542	POLR1A	100	87.558	MGP_CAROLIEiJ_G0028494	Polr1a	100	87.151	Mus_caroli
ENSODEG00000003542	POLR1A	100	88.023	ENSMUSG00000049553	Polr1a	100	87.616	Mus_musculus
ENSODEG00000003542	POLR1A	100	88.482	MGP_PahariEiJ_G0022230	Polr1a	100	88.074	Mus_pahari
ENSODEG00000003542	POLR1A	100	86.049	MGP_SPRETEiJ_G0029499	Polr1a	100	86.693	Mus_spretus
ENSODEG00000003542	POLR1A	100	89.831	ENSMPUG00000009135	POLR1A	100	89.831	Mustela_putorius_furo
ENSODEG00000003542	POLR1A	100	87.442	ENSMLUG00000015723	POLR1A	100	87.674	Myotis_lucifugus
ENSODEG00000003542	POLR1A	100	89.419	ENSNGAG00000017907	Polr1a	100	89.186	Nannospalax_galili
ENSODEG00000003542	POLR1A	100	66.241	ENSNBRG00000000519	polr1a	100	66.107	Neolamprologus_brichardi
ENSODEG00000003542	POLR1A	100	87.168	ENSNLEG00000002264	POLR1A	100	87.341	Nomascus_leucogenys
ENSODEG00000003542	POLR1A	75	91.339	ENSMEUG00000011665	-	75	91.339	Notamacropus_eugenii
ENSODEG00000003542	POLR1A	99	82.793	ENSOPRG00000008269	POLR1A	100	82.675	Ochotona_princeps
ENSODEG00000003542	POLR1A	100	66.473	ENSONIG00000015895	polr1a	100	66.281	Oreochromis_niloticus
ENSODEG00000003542	POLR1A	100	90.268	ENSOCUG00000010138	POLR1A	100	90.443	Oryctolagus_cuniculus
ENSODEG00000003542	POLR1A	100	64.942	ENSORLG00000008753	polr1a	99	64.535	Oryzias_latipes
ENSODEG00000003542	POLR1A	100	63.626	ENSORLG00020020726	polr1a	99	63.008	Oryzias_latipes_hni
ENSODEG00000003542	POLR1A	95	74.468	ENSORLG00015016071	polr1a	98	74.468	Oryzias_latipes_hsok
ENSODEG00000003542	POLR1A	100	89.315	ENSOGAG00000004031	POLR1A	100	89.315	Otolemur_garnettii
ENSODEG00000003542	POLR1A	100	88.580	ENSOARG00000020601	POLR1A	100	88.535	Ovis_aries
ENSODEG00000003542	POLR1A	100	88.850	ENSPPAG00000042450	POLR1A	100	89.024	Pan_paniscus
ENSODEG00000003542	POLR1A	100	89.425	ENSPPRG00000006702	POLR1A	100	89.309	Panthera_pardus
ENSODEG00000003542	POLR1A	100	88.940	ENSPTIG00000018783	POLR1A	100	88.825	Panthera_tigris_altaica
ENSODEG00000003542	POLR1A	100	88.792	ENSPTRG00000012147	POLR1A	100	88.966	Pan_troglodytes
ENSODEG00000003542	POLR1A	100	89.315	ENSPANG00000025908	POLR1A	100	89.489	Papio_anubis
ENSODEG00000003542	POLR1A	94	74.306	ENSPKIG00000005468	polr1a	99	74.306	Paramormyrops_kingsleyae
ENSODEG00000003542	POLR1A	63	70.852	ENSPSIG00000009321	-	99	71.759	Pelodiscus_sinensis
ENSODEG00000003542	POLR1A	55	68.623	ENSPMGG00000009718	polr1a	95	68.623	Periophthalmus_magnuspinnatus
ENSODEG00000003542	POLR1A	100	89.773	ENSPEMG00000022224	Polr1a	100	89.657	Peromyscus_maniculatus_bairdii
ENSODEG00000003542	POLR1A	95	79.291	ENSPCIG00000004222	POLR1A	99	79.291	Phascolarctos_cinereus
ENSODEG00000003542	POLR1A	100	64.631	ENSPFOG00000005025	polr1a	100	64.675	Poecilia_formosa
ENSODEG00000003542	POLR1A	100	64.668	ENSPLAG00000021389	polr1a	100	64.767	Poecilia_latipinna
ENSODEG00000003542	POLR1A	100	62.870	ENSPMEG00000006463	polr1a	100	62.999	Poecilia_mexicana
ENSODEG00000003542	POLR1A	100	64.672	ENSPREG00000002389	polr1a	100	64.658	Poecilia_reticulata
ENSODEG00000003542	POLR1A	100	88.618	ENSPPYG00000012217	POLR1A	100	88.792	Pongo_abelii
ENSODEG00000003542	POLR1A	92	96.000	ENSPCAG00000011582	POLR1A	92	96.000	Procavia_capensis
ENSODEG00000003542	POLR1A	100	88.921	ENSPCOG00000026987	POLR1A	100	89.095	Propithecus_coquereli
ENSODEG00000003542	POLR1A	95	89.051	ENSPVAG00000012674	POLR1A	95	88.421	Pteropus_vampyrus
ENSODEG00000003542	POLR1A	100	66.473	ENSPNYG00000000026	polr1a	100	65.991	Pundamilia_nyererei
ENSODEG00000003542	POLR1A	100	66.822	ENSPNAG00000019223	polr1a	100	66.822	Pygocentrus_nattereri
ENSODEG00000003542	POLR1A	100	89.063	ENSRNOG00000009545	Polr1a	100	88.656	Rattus_norvegicus
ENSODEG00000003542	POLR1A	100	88.850	ENSRBIG00000028335	POLR1A	100	89.315	Rhinopithecus_bieti
ENSODEG00000003542	POLR1A	100	88.792	ENSRROG00000031473	POLR1A	100	89.257	Rhinopithecus_roxellana
ENSODEG00000003542	POLR1A	99	36.708	YOR341W	RPA190	99	36.800	Saccharomyces_cerevisiae
ENSODEG00000003542	POLR1A	100	87.689	ENSSBOG00000030262	POLR1A	100	88.211	Saimiri_boliviensis_boliviensis
ENSODEG00000003542	POLR1A	100	72.659	ENSSHAG00000014739	POLR1A	100	72.659	Sarcophilus_harrisii
ENSODEG00000003542	POLR1A	100	67.793	ENSSFOG00015019716	polr1a	100	67.246	Scleropages_formosus
ENSODEG00000003542	POLR1A	100	65.476	ENSSMAG00000014342	polr1a	100	65.414	Scophthalmus_maximus
ENSODEG00000003542	POLR1A	100	67.054	ENSSDUG00000014631	polr1a	100	66.821	Seriola_dumerili
ENSODEG00000003542	POLR1A	100	65.137	ENSSLDG00000024095	polr1a	100	64.838	Seriola_lalandi_dorsalis
ENSODEG00000003542	POLR1A	73	96.809	ENSSARG00000003136	-	76	96.809	Sorex_araneus
ENSODEG00000003542	POLR1A	95	76.410	ENSSPUG00000004215	POLR1A	98	76.410	Sphenodon_punctatus
ENSODEG00000003542	POLR1A	64	71.995	ENSSPAG00000016341	polr1a	94	71.995	Stegastes_partitus
ENSODEG00000003542	POLR1A	83	89.979	ENSSSCG00000008226	POLR1A	99	89.951	Sus_scrofa
ENSODEG00000003542	POLR1A	99	70.626	ENSTGUG00000010704	POLR1A	100	69.754	Taeniopygia_guttata
ENSODEG00000003542	POLR1A	100	63.668	ENSTRUG00000002210	polr1a	99	63.343	Takifugu_rubripes
ENSODEG00000003542	POLR1A	100	59.792	ENSTNIG00000010116	polr1a	100	59.734	Tetraodon_nigroviridis
ENSODEG00000003542	POLR1A	74	95.575	ENSTBEG00000008646	POLR1A	74	95.575	Tupaia_belangeri
ENSODEG00000003542	POLR1A	100	84.253	ENSTTRG00000008597	POLR1A	100	84.370	Tursiops_truncatus
ENSODEG00000003542	POLR1A	69	88.917	ENSUAMG00000012158	-	94	88.748	Ursus_americanus
ENSODEG00000003542	POLR1A	100	88.786	ENSUMAG00000006700	POLR1A	100	88.669	Ursus_maritimus
ENSODEG00000003542	POLR1A	100	89.192	ENSVVUG00000001245	POLR1A	100	88.902	Vulpes_vulpes
ENSODEG00000003542	POLR1A	100	67.979	ENSXETG00000001952	polr1a	100	67.979	Xenopus_tropicalis
ENSODEG00000003542	POLR1A	100	64.614	ENSXMAG00000004032	polr1a	100	64.925	Xiphophorus_maculatus