EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000003589 (Gene tree)
Gene ID: 101573832
Gene Symbol: PATZ1
Alias: -
Full Name: POZ/BTB and AT hook containing zinc finger 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 22042 bases
Position: chrJH651745.1:1778498-1800539
Accession: 101573832
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000004715	zf-C2H2	PF00096.26	2e-26	1	5
ENSODEP00000004715	zf-C2H2	PF00096.26	2e-26	2	5
ENSODEP00000004715	zf-C2H2	PF00096.26	2e-26	3	5
ENSODEP00000004715	zf-C2H2	PF00096.26	2e-26	4	5
ENSODEP00000004715	zf-C2H2	PF00096.26	2e-26	5	5
ENSODEP00000004716	zf-C2H2	PF00096.26	4e-20	1	4
ENSODEP00000004716	zf-C2H2	PF00096.26	4e-20	2	4
ENSODEP00000004716	zf-C2H2	PF00096.26	4e-20	3	4
ENSODEP00000004716	zf-C2H2	PF00096.26	4e-20	4	4
ENSODEP00000004717	zf-C2H2	PF00096.26	1.2e-15	1	3
ENSODEP00000004717	zf-C2H2	PF00096.26	1.2e-15	2	3
ENSODEP00000004717	zf-C2H2	PF00096.26	1.2e-15	3	3
ENSODEP00000004715	zf-met	PF12874.7	1.9e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000004804	PATZ1-202	3673	XM_004645506	ENSODEP00000004716	641 (aa)	XP_004645563	UPI000333A027
ENSODET00000004805	PATZ1-203	3018	XM_004645508	ENSODEP00000004717	537 (aa)	XP_004645565	UPI000333B771
ENSODET00000004806	PATZ1-204	309	-	ENSODEP00000004718	102 (aa)	-	UPI000BACF63F
ENSODET00000004803	PATZ1-201	3811	XM_004645505	ENSODEP00000004715	687 (aa)	XP_004645562	UPI000333D9F0

Gene Model

Click here to download ENSODEG00000003589's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000003589's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000003589	PATZ1	51	30.818	ENSODEG00000020561	ZNF319	79	30.769
ENSODEG00000003589	PATZ1	82	36.842	ENSODEG00000007228	ZBTB14	90	36.842
ENSODEG00000003589	PATZ1	89	35.329	ENSODEG00000008889	MYNN	86	30.918
ENSODEG00000003589	PATZ1	51	32.143	ENSODEG00000009193	ZNF112	58	32.143
ENSODEG00000003589	PATZ1	53	31.683	ENSODEG00000009602	ZNF81	57	31.683
ENSODEG00000003589	PATZ1	59	40.179	ENSODEG00000002735	ZFP62	90	40.179
ENSODEG00000003589	PATZ1	56	34.946	ENSODEG00000016460	-	71	42.553
ENSODEG00000003589	PATZ1	71	40.741	ENSODEG00000014058	ZBTB24	66	39.773
ENSODEG00000003589	PATZ1	68	43.333	ENSODEG00000010242	ZBTB47	58	43.333
ENSODEG00000003589	PATZ1	91	36.538	ENSODEG00000013020	GZF1	90	36.538
ENSODEG00000003589	PATZ1	52	33.168	ENSODEG00000008278	-	80	33.168
ENSODEG00000003589	PATZ1	80	35.632	ENSODEG00000005887	ZBTB26	84	35.632
ENSODEG00000003589	PATZ1	53	30.964	ENSODEG00000009133	PRDM5	81	40.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000003589	PATZ1	100	98.752	ENSG00000100105	PATZ1	100	98.752	Homo_sapiens
ENSODEG00000003589	PATZ1	99	59.656	ENSAPOG00000018447	patz1	100	58.895	Acanthochromis_polyacanthus
ENSODEG00000003589	PATZ1	100	98.690	ENSAMEG00000007074	PATZ1	100	98.690	Ailuropoda_melanoleuca
ENSODEG00000003589	PATZ1	100	60.232	ENSACIG00000016779	patz1	100	59.961	Amphilophus_citrinellus
ENSODEG00000003589	PATZ1	100	57.423	ENSAPEG00000013354	patz1	100	57.423	Amphiprion_percula
ENSODEG00000003589	PATZ1	100	63.086	ENSATEG00000011260	patz1	100	61.765	Anabas_testudineus
ENSODEG00000003589	PATZ1	85	91.438	ENSAPLG00000003934	PATZ1	99	91.438	Anas_platyrhynchos
ENSODEG00000003589	PATZ1	100	98.752	ENSANAG00000029603	PATZ1	100	98.752	Aotus_nancymaae
ENSODEG00000003589	PATZ1	97	62.147	ENSAMXG00000002273	patz1	98	62.147	Astyanax_mexicanus
ENSODEG00000003589	PATZ1	100	98.690	ENSBTAG00000005478	PATZ1	100	98.690	Bos_taurus
ENSODEG00000003589	PATZ1	100	98.752	ENSCJAG00000010978	PATZ1	100	98.752	Callithrix_jacchus
ENSODEG00000003589	PATZ1	100	98.836	ENSCAFG00000013087	PATZ1	100	98.836	Canis_familiaris
ENSODEG00000003589	PATZ1	100	98.253	ENSCHIG00000020203	PATZ1	100	98.253	Capra_hircus
ENSODEG00000003589	PATZ1	100	98.399	ENSTSYG00000033183	PATZ1	100	98.399	Carlito_syrichta
ENSODEG00000003589	PATZ1	100	98.752	ENSCCAG00000028772	PATZ1	100	98.752	Cebus_capucinus
ENSODEG00000003589	PATZ1	100	98.440	ENSCATG00000006101	PATZ1	100	98.440	Cercocebus_atys
ENSODEG00000003589	PATZ1	100	88.696	ENSCPBG00000011277	PATZ1	100	88.696	Chrysemys_picta_bellii
ENSODEG00000003589	PATZ1	100	98.440	ENSCANG00000024972	PATZ1	100	98.440	Colobus_angolensis_palliatus
ENSODEG00000003589	PATZ1	100	96.361	ENSCGRG00001004071	Patz1	100	96.361	Cricetulus_griseus_chok1gshd
ENSODEG00000003589	PATZ1	93	97.045	ENSCGRG00000004814	Patz1	100	97.045	Cricetulus_griseus_crigri
ENSODEG00000003589	PATZ1	100	55.028	ENSCSEG00000001385	patz1	100	55.000	Cynoglossus_semilaevis
ENSODEG00000003589	PATZ1	100	58.555	ENSCVAG00000007684	patz1	100	58.850	Cyprinodon_variegatus
ENSODEG00000003589	PATZ1	97	60.679	ENSDARG00000076584	patz1	98	58.815	Danio_rerio
ENSODEG00000003589	PATZ1	90	98.223	ENSDNOG00000003183	PATZ1	100	98.223	Dasypus_novemcinctus
ENSODEG00000003589	PATZ1	100	98.836	ENSDORG00000023834	Patz1	100	98.836	Dipodomys_ordii
ENSODEG00000003589	PATZ1	100	98.399	ENSECAG00000025030	PATZ1	100	98.399	Equus_caballus
ENSODEG00000003589	PATZ1	99	62.075	ENSELUG00000002333	patz1	100	59.863	Esox_lucius
ENSODEG00000003589	PATZ1	100	98.836	ENSFCAG00000030253	PATZ1	100	98.836	Felis_catus
ENSODEG00000003589	PATZ1	86	91.356	ENSFALG00000007450	PATZ1	99	91.482	Ficedula_albicollis
ENSODEG00000003589	PATZ1	96	98.441	ENSFDAG00000005614	PATZ1	100	98.441	Fukomys_damarensis
ENSODEG00000003589	PATZ1	100	57.810	ENSFHEG00000014755	patz1	100	57.664	Fundulus_heteroclitus
ENSODEG00000003589	PATZ1	98	55.230	ENSGMOG00000001062	patz1	98	54.848	Gadus_morhua
ENSODEG00000003589	PATZ1	100	88.201	ENSGALG00000006934	PATZ1	100	88.633	Gallus_gallus
ENSODEG00000003589	PATZ1	100	58.527	ENSGAFG00000010053	patz1	100	57.562	Gambusia_affinis
ENSODEG00000003589	PATZ1	85	91.767	ENSGAGG00000003214	PATZ1	100	91.767	Gopherus_agassizii
ENSODEG00000003589	PATZ1	100	98.596	ENSGGOG00000017171	PATZ1	100	98.596	Gorilla_gorilla
ENSODEG00000003589	PATZ1	98	62.823	ENSHCOG00000017644	patz1	93	57.801	Hippocampus_comes
ENSODEG00000003589	PATZ1	97	60.692	ENSIPUG00000017653	patz1	97	54.184	Ictalurus_punctatus
ENSODEG00000003589	PATZ1	100	98.440	ENSSTOG00000020707	PATZ1	100	98.440	Ictidomys_tridecemlineatus
ENSODEG00000003589	PATZ1	100	96.517	ENSJJAG00000015259	Patz1	100	96.517	Jaculus_jaculus
ENSODEG00000003589	PATZ1	100	57.386	ENSKMAG00000008157	patz1	100	57.203	Kryptolebias_marmoratus
ENSODEG00000003589	PATZ1	100	97.817	ENSLAFG00000002317	PATZ1	100	97.817	Loxodonta_africana
ENSODEG00000003589	PATZ1	100	98.284	ENSMFAG00000040968	PATZ1	100	98.284	Macaca_fascicularis
ENSODEG00000003589	PATZ1	100	98.284	ENSMNEG00000037588	PATZ1	100	98.284	Macaca_nemestrina
ENSODEG00000003589	PATZ1	100	98.440	ENSMLEG00000030938	PATZ1	100	98.440	Mandrillus_leucophaeus
ENSODEG00000003589	PATZ1	100	57.331	ENSMAMG00000023652	patz1	100	57.331	Mastacembelus_armatus
ENSODEG00000003589	PATZ1	85	87.521	ENSMGAG00000008439	PATZ1	100	87.521	Meleagris_gallopavo
ENSODEG00000003589	PATZ1	100	98.128	ENSMAUG00000004129	Patz1	100	98.128	Mesocricetus_auratus
ENSODEG00000003589	PATZ1	100	98.399	ENSMICG00000005430	PATZ1	100	98.399	Microcebus_murinus
ENSODEG00000003589	PATZ1	100	97.972	ENSMOCG00000014488	Patz1	100	97.972	Microtus_ochrogaster
ENSODEG00000003589	PATZ1	100	55.078	ENSMMOG00000021679	patz1	100	54.513	Mola_mola
ENSODEG00000003589	PATZ1	100	57.224	ENSMALG00000021172	patz1	100	57.224	Monopterus_albus
ENSODEG00000003589	PATZ1	100	97.817	MGP_CAROLIEiJ_G0016007	Patz1	100	97.817	Mus_caroli
ENSODEG00000003589	PATZ1	100	97.972	ENSMUSG00000020453	Patz1	100	97.972	Mus_musculus
ENSODEG00000003589	PATZ1	100	97.972	MGP_PahariEiJ_G0016884	Patz1	100	97.972	Mus_pahari
ENSODEG00000003589	PATZ1	100	97.972	MGP_SPRETEiJ_G0016846	Patz1	100	97.972	Mus_spretus
ENSODEG00000003589	PATZ1	100	98.544	ENSMLUG00000009942	PATZ1	100	98.544	Myotis_lucifugus
ENSODEG00000003589	PATZ1	100	98.284	ENSNGAG00000010268	Patz1	100	98.284	Nannospalax_galili
ENSODEG00000003589	PATZ1	100	60.039	ENSNBRG00000016032	patz1	100	59.768	Neolamprologus_brichardi
ENSODEG00000003589	PATZ1	68	93.763	ENSMEUG00000016293	PATZ1	100	93.763	Notamacropus_eugenii
ENSODEG00000003589	PATZ1	100	58.772	ENSONIG00000004248	patz1	100	58.565	Oreochromis_niloticus
ENSODEG00000003589	PATZ1	100	93.033	ENSOANG00000014654	PATZ1	100	93.904	Ornithorhynchus_anatinus
ENSODEG00000003589	PATZ1	100	58.473	ENSORLG00020010937	patz1	100	58.473	Oryzias_latipes_hni
ENSODEG00000003589	PATZ1	100	58.003	ENSORLG00015007396	patz1	100	58.003	Oryzias_latipes_hsok
ENSODEG00000003589	PATZ1	100	57.817	ENSOMEG00000006636	patz1	100	57.817	Oryzias_melastigma
ENSODEG00000003589	PATZ1	100	98.253	ENSOGAG00000027905	PATZ1	100	98.253	Otolemur_garnettii
ENSODEG00000003589	PATZ1	100	98.596	ENSPPAG00000033227	PATZ1	100	98.596	Pan_paniscus
ENSODEG00000003589	PATZ1	100	98.836	ENSPPRG00000001573	PATZ1	100	98.836	Panthera_pardus
ENSODEG00000003589	PATZ1	86	98.651	ENSPTIG00000007937	PATZ1	91	98.651	Panthera_tigris_altaica
ENSODEG00000003589	PATZ1	100	98.596	ENSPTRG00000014268	PATZ1	100	98.596	Pan_troglodytes
ENSODEG00000003589	PATZ1	100	98.440	ENSPANG00000006821	PATZ1	100	98.399	Papio_anubis
ENSODEG00000003589	PATZ1	100	62.687	ENSPKIG00000019584	patz1	100	62.500	Paramormyrops_kingsleyae
ENSODEG00000003589	PATZ1	60	82.567	ENSPSIG00000016553	-	91	82.567	Pelodiscus_sinensis
ENSODEG00000003589	PATZ1	58	96.212	ENSPSIG00000011562	-	100	96.571	Pelodiscus_sinensis
ENSODEG00000003589	PATZ1	100	56.860	ENSPMGG00000010196	patz1	100	56.860	Periophthalmus_magnuspinnatus
ENSODEG00000003589	PATZ1	100	98.440	ENSPEMG00000005321	Patz1	100	98.440	Peromyscus_maniculatus_bairdii
ENSODEG00000003589	PATZ1	100	57.185	ENSPLAG00000010425	patz1	100	57.331	Poecilia_latipinna
ENSODEG00000003589	PATZ1	100	57.269	ENSPMEG00000000255	patz1	100	57.416	Poecilia_mexicana
ENSODEG00000003589	PATZ1	100	56.630	ENSPREG00000002440	patz1	100	56.768	Poecilia_reticulata
ENSODEG00000003589	PATZ1	100	98.253	ENSPPYG00000011732	PATZ1	100	98.253	Pongo_abelii
ENSODEG00000003589	PATZ1	100	98.253	ENSPCOG00000019729	PATZ1	100	98.253	Propithecus_coquereli
ENSODEG00000003589	PATZ1	100	98.690	ENSPVAG00000001749	PATZ1	100	98.690	Pteropus_vampyrus
ENSODEG00000003589	PATZ1	100	59.104	ENSPNYG00000013542	patz1	100	58.906	Pundamilia_nyererei
ENSODEG00000003589	PATZ1	84	60.065	ENSPNAG00000017222	patz1	99	60.065	Pygocentrus_nattereri
ENSODEG00000003589	PATZ1	100	98.440	ENSRBIG00000044231	PATZ1	100	98.440	Rhinopithecus_bieti
ENSODEG00000003589	PATZ1	100	98.440	ENSRROG00000037155	PATZ1	100	98.440	Rhinopithecus_roxellana
ENSODEG00000003589	PATZ1	100	98.752	ENSSBOG00000003894	PATZ1	100	98.752	Saimiri_boliviensis_boliviensis
ENSODEG00000003589	PATZ1	79	88.462	ENSSFOG00015013244	patz1	78	88.462	Scleropages_formosus
ENSODEG00000003589	PATZ1	100	86.344	ENSSPUG00000015298	PATZ1	100	86.913	Sphenodon_punctatus
ENSODEG00000003589	PATZ1	85	98.282	ENSSSCG00000010027	PATZ1	100	98.282	Sus_scrofa
ENSODEG00000003589	PATZ1	100	58.069	ENSTRUG00000015366	patz1	100	57.793	Takifugu_rubripes
ENSODEG00000003589	PATZ1	100	98.690	ENSTTRG00000010279	PATZ1	100	98.690	Tursiops_truncatus
ENSODEG00000003589	PATZ1	100	98.752	ENSUAMG00000015014	PATZ1	100	98.752	Ursus_americanus
ENSODEG00000003589	PATZ1	100	73.623	ENSXETG00000004190	patz1	100	72.754	Xenopus_tropicalis
ENSODEG00000003589	PATZ1	100	57.771	ENSXMAG00000015531	patz1	100	57.918	Xiphophorus_maculatus