EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000003597 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 1470 bases
Position: chrJH651678.1:4750401-4751870
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000004730	RRM_1	PF00076.22	1.1e-24	1	2
ENSODEP00000004730	RRM_1	PF00076.22	1.1e-24	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000004818	-	1152	-	ENSODEP00000004730	383 (aa)	-	-

Gene Model

Click here to download ENSODEG00000003597's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000003597's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000003597	-	69	32.143	ENSODEG00000013269	-	79	31.373
ENSODEG00000003597	-	100	64.508	ENSODEG00000008916	-	82	67.647
ENSODEG00000003597	-	74	31.333	ENSODEG00000003229	PABPC1	53	31.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000003597	-	79	86.751	ENSG00000143368	SF3B4	97	81.720	Homo_sapiens
ENSODEG00000003597	-	59	80.498	ENSAPOG00000017647	sf3b4	76	68.454	Acanthochromis_polyacanthus
ENSODEG00000003597	-	79	87.066	ENSAMEG00000010073	SF3B4	75	87.066	Ailuropoda_melanoleuca
ENSODEG00000003597	-	57	79.310	ENSACIG00000018455	sf3b4	67	79.913	Amphilophus_citrinellus
ENSODEG00000003597	-	59	80.498	ENSAOCG00000019801	sf3b4	76	68.454	Amphiprion_ocellaris
ENSODEG00000003597	-	59	80.498	ENSAPEG00000010365	sf3b4	76	68.454	Amphiprion_percula
ENSODEG00000003597	-	59	80.083	ENSATEG00000012844	sf3b4	75	68.966	Anabas_testudineus
ENSODEG00000003597	-	65	81.439	ENSACAG00000010019	SF3B4	74	79.747	Anolis_carolinensis
ENSODEG00000003597	-	79	86.751	ENSANAG00000031025	SF3B4	75	86.751	Aotus_nancymaae
ENSODEG00000003597	-	59	79.668	ENSACLG00000014260	sf3b4	76	68.139	Astatotilapia_calliptera
ENSODEG00000003597	-	59	80.083	ENSAMXG00000008282	sf3b4	76	67.913	Astyanax_mexicanus
ENSODEG00000003597	-	79	87.066	ENSBTAG00000012495	SF3B4	75	87.066	Bos_taurus
ENSODEG00000003597	-	76	76.238	ENSCJAG00000042351	SF3B4	66	76.238	Callithrix_jacchus
ENSODEG00000003597	-	79	87.066	ENSCAFG00000011617	SF3B4	75	87.066	Canis_familiaris
ENSODEG00000003597	-	79	87.066	ENSCAFG00020019775	SF3B4	75	87.066	Canis_lupus_dingo
ENSODEG00000003597	-	79	87.066	ENSCHIG00000025663	-	75	87.066	Capra_hircus
ENSODEG00000003597	-	79	86.751	ENSTSYG00000009295	SF3B4	75	86.751	Carlito_syrichta
ENSODEG00000003597	-	79	87.382	ENSCPOG00000008267	SF3B4	75	87.382	Cavia_porcellus
ENSODEG00000003597	-	78	77.918	ENSCCAG00000019823	-	71	78.859	Cebus_capucinus
ENSODEG00000003597	-	79	81.388	ENSCCAG00000021751	-	76	77.581	Cebus_capucinus
ENSODEG00000003597	-	79	86.751	ENSCATG00000033114	SF3B4	75	86.751	Cercocebus_atys
ENSODEG00000003597	-	79	87.382	ENSCLAG00000015851	SF3B4	75	87.382	Chinchilla_lanigera
ENSODEG00000003597	-	79	86.751	ENSCSAG00000018129	SF3B4	75	86.751	Chlorocebus_sabaeus
ENSODEG00000003597	-	65	81.818	ENSCPBG00000008041	SF3B4	74	79.811	Chrysemys_picta_bellii
ENSODEG00000003597	-	53	74.537	ENSCING00000002337	-	61	73.009	Ciona_intestinalis
ENSODEG00000003597	-	79	86.751	ENSCANG00000035579	SF3B4	75	86.751	Colobus_angolensis_palliatus
ENSODEG00000003597	-	79	86.751	ENSCGRG00001003590	Sf3b4	75	86.751	Cricetulus_griseus_chok1gshd
ENSODEG00000003597	-	79	86.751	ENSCGRG00000016914	Sf3b4	75	86.751	Cricetulus_griseus_crigri
ENSODEG00000003597	-	65	72.794	ENSCVAG00000005536	sf3b4	56	82.569	Cyprinodon_variegatus
ENSODEG00000003597	-	59	80.083	ENSDARG00000018574	sf3b4	76	68.438	Danio_rerio
ENSODEG00000003597	-	76	84.868	ENSDNOG00000048908	-	73	84.590	Dasypus_novemcinctus
ENSODEG00000003597	-	97	60.140	ENSDNOG00000037231	-	74	65.359	Dasypus_novemcinctus
ENSODEG00000003597	-	79	87.066	ENSDORG00000016366	Sf3b4	75	87.066	Dipodomys_ordii
ENSODEG00000003597	-	53	73.148	FBgn0015818	Spx	62	73.148	Drosophila_melanogaster
ENSODEG00000003597	-	79	80.380	ENSETEG00000008963	SF3B4	74	80.380	Echinops_telfairi
ENSODEG00000003597	-	79	87.066	ENSEASG00005001477	SF3B4	75	87.066	Equus_asinus_asinus
ENSODEG00000003597	-	79	87.066	ENSECAG00000024737	SF3B4	75	87.066	Equus_caballus
ENSODEG00000003597	-	59	80.913	ENSELUG00000012876	sf3b4	75	69.279	Esox_lucius
ENSODEG00000003597	-	79	87.066	ENSFCAG00000010106	SF3B4	75	87.066	Felis_catus
ENSODEG00000003597	-	79	87.382	ENSFDAG00000009286	SF3B4	75	87.382	Fukomys_damarensis
ENSODEG00000003597	-	65	81.439	ENSGALG00000013352	SF3B4	74	78.233	Gallus_gallus
ENSODEG00000003597	-	66	77.820	ENSGAFG00000010181	sf3b4	61	80.083	Gambusia_affinis
ENSODEG00000003597	-	52	82.547	ENSGACG00000003819	sf3b4	58	80.786	Gasterosteus_aculeatus
ENSODEG00000003597	-	65	81.818	ENSGAGG00000025055	SF3B4	65	79.811	Gopherus_agassizii
ENSODEG00000003597	-	100	61.298	ENSGGOG00000038845	-	55	73.488	Gorilla_gorilla
ENSODEG00000003597	-	79	86.751	ENSGGOG00000004761	SF3B4	75	86.751	Gorilla_gorilla
ENSODEG00000003597	-	59	79.668	ENSHBUG00000002028	sf3b4	76	68.139	Haplochromis_burtoni
ENSODEG00000003597	-	79	87.382	ENSHGLG00000012360	SF3B4	75	87.382	Heterocephalus_glaber_female
ENSODEG00000003597	-	58	83.544	ENSHGLG00100008533	SF3B4	74	77.287	Heterocephalus_glaber_male
ENSODEG00000003597	-	52	82.243	ENSHCOG00000003014	sf3b4	57	79.913	Hippocampus_comes
ENSODEG00000003597	-	59	80.498	ENSIPUG00000012242	Sf3b4	90	60.533	Ictalurus_punctatus
ENSODEG00000003597	-	79	87.066	ENSSTOG00000000684	-	75	87.066	Ictidomys_tridecemlineatus
ENSODEG00000003597	-	75	68.439	ENSSTOG00000029627	-	69	62.458	Ictidomys_tridecemlineatus
ENSODEG00000003597	-	70	92.179	ENSJJAG00000022500	Sf3b4	91	92.179	Jaculus_jaculus
ENSODEG00000003597	-	59	80.083	ENSKMAG00000008154	sf3b4	61	80.083	Kryptolebias_marmoratus
ENSODEG00000003597	-	60	79.508	ENSLACG00000004436	SF3B4	86	74.528	Latimeria_chalumnae
ENSODEG00000003597	-	60	79.918	ENSLOCG00000009048	sf3b4	74	74.763	Lepisosteus_oculatus
ENSODEG00000003597	-	79	86.478	ENSLAFG00000008531	SF3B4	75	86.478	Loxodonta_africana
ENSODEG00000003597	-	79	86.751	ENSMFAG00000042395	SF3B4	75	86.751	Macaca_fascicularis
ENSODEG00000003597	-	79	64.331	ENSMFAG00000039067	-	74	64.430	Macaca_fascicularis
ENSODEG00000003597	-	79	86.751	ENSMMUG00000007256	SF3B4	75	86.751	Macaca_mulatta
ENSODEG00000003597	-	79	64.013	ENSMNEG00000031526	-	74	64.094	Macaca_nemestrina
ENSODEG00000003597	-	79	86.751	ENSMNEG00000031839	SF3B4	75	86.751	Macaca_nemestrina
ENSODEG00000003597	-	79	86.751	ENSMLEG00000038667	SF3B4	75	86.751	Mandrillus_leucophaeus
ENSODEG00000003597	-	59	80.913	ENSMAMG00000014692	sf3b4	76	68.847	Mastacembelus_armatus
ENSODEG00000003597	-	59	79.668	ENSMZEG00005026741	sf3b4	76	68.139	Maylandia_zebra
ENSODEG00000003597	-	65	81.439	ENSMGAG00000000653	SF3B4	75	77.918	Meleagris_gallopavo
ENSODEG00000003597	-	79	86.751	ENSMAUG00000015266	Sf3b4	75	86.751	Mesocricetus_auratus
ENSODEG00000003597	-	79	87.066	ENSMICG00000044961	SF3B4	75	87.066	Microcebus_murinus
ENSODEG00000003597	-	79	86.751	ENSMOCG00000013658	-	75	86.751	Microtus_ochrogaster
ENSODEG00000003597	-	77	84.740	ENSMOCG00000014155	-	76	84.740	Microtus_ochrogaster
ENSODEG00000003597	-	57	80.952	ENSMMOG00000018032	sf3b4	58	80.786	Mola_mola
ENSODEG00000003597	-	79	86.751	ENSMODG00000018767	SF3B4	75	86.751	Monodelphis_domestica
ENSODEG00000003597	-	79	86.435	MGP_CAROLIEiJ_G0025365	Sf3b4	75	86.435	Mus_caroli
ENSODEG00000003597	-	79	86.751	ENSMUSG00000068856	Sf3b4	75	86.751	Mus_musculus
ENSODEG00000003597	-	79	86.751	MGP_PahariEiJ_G0026809	Sf3b4	75	86.751	Mus_pahari
ENSODEG00000003597	-	79	86.751	MGP_SPRETEiJ_G0026309	Sf3b4	75	86.751	Mus_spretus
ENSODEG00000003597	-	79	87.066	ENSMPUG00000005563	SF3B4	75	87.066	Mustela_putorius_furo
ENSODEG00000003597	-	79	86.751	ENSMLUG00000010789	SF3B4	75	86.751	Myotis_lucifugus
ENSODEG00000003597	-	79	86.435	ENSNGAG00000016337	Sf3b4	75	86.435	Nannospalax_galili
ENSODEG00000003597	-	59	80.083	ENSNBRG00000013865	sf3b4	76	68.454	Neolamprologus_brichardi
ENSODEG00000003597	-	100	66.506	ENSNLEG00000000537	-	80	73.502	Nomascus_leucogenys
ENSODEG00000003597	-	51	93.182	ENSMEUG00000003272	SF3B4	51	92.500	Notamacropus_eugenii
ENSODEG00000003597	-	79	83.596	ENSOPRG00000010808	SF3B4	75	83.596	Ochotona_princeps
ENSODEG00000003597	-	59	79.253	ENSONIG00000002730	sf3b4	76	67.823	Oreochromis_niloticus
ENSODEG00000003597	-	65	59.410	ENSOANG00000004768	-	54	63.404	Ornithorhynchus_anatinus
ENSODEG00000003597	-	79	87.066	ENSOCUG00000004614	SF3B4	75	87.066	Oryctolagus_cuniculus
ENSODEG00000003597	-	57	80.258	ENSORLG00000003062	sf3b4	59	80.786	Oryzias_latipes
ENSODEG00000003597	-	57	80.258	ENSORLG00020000687	sf3b4	57	80.786	Oryzias_latipes_hni
ENSODEG00000003597	-	57	80.258	ENSORLG00015010989	sf3b4	57	80.786	Oryzias_latipes_hsok
ENSODEG00000003597	-	79	87.066	ENSOGAG00000006265	SF3B4	75	87.066	Otolemur_garnettii
ENSODEG00000003597	-	79	87.066	ENSOARG00000020718	-	75	87.066	Ovis_aries
ENSODEG00000003597	-	78	73.077	ENSOARG00000007368	-	75	70.192	Ovis_aries
ENSODEG00000003597	-	79	86.751	ENSPPAG00000040904	SF3B4	75	86.751	Pan_paniscus
ENSODEG00000003597	-	80	75.460	ENSPPAG00000030024	-	76	71.293	Pan_paniscus
ENSODEG00000003597	-	79	87.066	ENSPPRG00000007384	SF3B4	75	87.066	Panthera_pardus
ENSODEG00000003597	-	79	87.066	ENSPTIG00000014530	SF3B4	75	87.066	Panthera_tigris_altaica
ENSODEG00000003597	-	79	86.751	ENSPTRG00000001243	SF3B4	75	86.751	Pan_troglodytes
ENSODEG00000003597	-	79	86.751	ENSPANG00000005126	SF3B4	75	86.751	Papio_anubis
ENSODEG00000003597	-	59	80.498	ENSPKIG00000020669	sf3b4	88	67.049	Paramormyrops_kingsleyae
ENSODEG00000003597	-	58	72.996	ENSPSIG00000009565	SF3B4	85	63.538	Pelodiscus_sinensis
ENSODEG00000003597	-	79	86.751	ENSPEMG00000017568	Sf3b4	75	86.751	Peromyscus_maniculatus_bairdii
ENSODEG00000003597	-	64	72.868	ENSPMAG00000007842	-	54	76.856	Petromyzon_marinus
ENSODEG00000003597	-	79	86.751	ENSPCIG00000008765	SF3B4	75	86.751	Phascolarctos_cinereus
ENSODEG00000003597	-	68	76.923	ENSPFOG00000005754	sf3b4	77	69.401	Poecilia_formosa
ENSODEG00000003597	-	68	76.923	ENSPLAG00000001401	sf3b4	84	69.401	Poecilia_latipinna
ENSODEG00000003597	-	68	76.923	ENSPREG00000011076	sf3b4	60	79.253	Poecilia_reticulata
ENSODEG00000003597	-	51	79.904	ENSPCAG00000000392	SF3B4	56	92.857	Procavia_capensis
ENSODEG00000003597	-	79	87.066	ENSPCOG00000015399	SF3B4	75	87.066	Propithecus_coquereli
ENSODEG00000003597	-	79	87.066	ENSPVAG00000014171	SF3B4	75	87.066	Pteropus_vampyrus
ENSODEG00000003597	-	59	79.668	ENSPNYG00000012700	sf3b4	76	68.139	Pundamilia_nyererei
ENSODEG00000003597	-	79	86.751	ENSRNOG00000021181	Sf3b4	75	86.751	Rattus_norvegicus
ENSODEG00000003597	-	79	86.751	ENSRBIG00000043392	SF3B4	75	86.751	Rhinopithecus_bieti
ENSODEG00000003597	-	79	86.751	ENSRROG00000029366	SF3B4	75	86.751	Rhinopithecus_roxellana
ENSODEG00000003597	-	82	70.988	ENSRROG00000028213	-	79	69.728	Rhinopithecus_roxellana
ENSODEG00000003597	-	79	69.401	ENSSBOG00000025174	-	71	69.401	Saimiri_boliviensis_boliviensis
ENSODEG00000003597	-	79	86.435	ENSSBOG00000012310	-	75	86.435	Saimiri_boliviensis_boliviensis
ENSODEG00000003597	-	79	83.596	ENSSHAG00000004043	SF3B4	72	86.131	Sarcophilus_harrisii
ENSODEG00000003597	-	59	80.498	ENSSFOG00015008864	sf3b4	75	69.159	Scleropages_formosus
ENSODEG00000003597	-	59	80.498	ENSSMAG00000006837	sf3b4	75	69.231	Scophthalmus_maximus
ENSODEG00000003597	-	59	80.913	ENSSDUG00000012064	sf3b4	75	69.182	Seriola_dumerili
ENSODEG00000003597	-	59	80.913	ENSSLDG00000014226	sf3b4	75	68.868	Seriola_lalandi_dorsalis
ENSODEG00000003597	-	61	79.268	ENSSPUG00000001028	SF3B4	57	81.659	Sphenodon_punctatus
ENSODEG00000003597	-	59	81.328	ENSSPAG00000019219	sf3b4	76	69.470	Stegastes_partitus
ENSODEG00000003597	-	91	61.254	ENSSSCG00000039440	-	91	57.550	Sus_scrofa
ENSODEG00000003597	-	79	86.751	ENSSSCG00000006665	-	75	86.751	Sus_scrofa
ENSODEG00000003597	-	58	80.591	ENSTGUG00000004470	SF3B4	90	81.223	Taeniopygia_guttata
ENSODEG00000003597	-	56	80.263	ENSTRUG00000004516	sf3b4	57	79.913	Takifugu_rubripes
ENSODEG00000003597	-	57	80.087	ENSTNIG00000009156	sf3b4	58	80.349	Tetraodon_nigroviridis
ENSODEG00000003597	-	79	87.066	ENSTTRG00000005217	SF3B4	75	87.066	Tursiops_truncatus
ENSODEG00000003597	-	79	87.066	ENSUAMG00000022468	SF3B4	75	87.066	Ursus_americanus
ENSODEG00000003597	-	79	86.435	ENSUMAG00000003802	SF3B4	75	86.435	Ursus_maritimus
ENSODEG00000003597	-	76	87.213	ENSVPAG00000008152	SF3B4	74	87.213	Vicugna_pacos
ENSODEG00000003597	-	79	87.066	ENSVVUG00000007732	-	81	87.066	Vulpes_vulpes
ENSODEG00000003597	-	63	83.529	ENSVVUG00000022697	-	53	83.529	Vulpes_vulpes
ENSODEG00000003597	-	68	77.656	ENSXCOG00000019895	sf3b4	61	80.083	Xiphophorus_couchianus
ENSODEG00000003597	-	59	80.083	ENSXMAG00000003772	sf3b4	77	70.032	Xiphophorus_maculatus