EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000003950 (Gene tree)
Gene ID: 101582608
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 90080 bases
Position: chrJH651597.1:10945468-11035547
Accession: 101582608
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000005212	Rif1_N	PF12231.8	1.5e-58	1	2
ENSODEP00000005212	Rif1_N	PF12231.8	1.5e-58	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000005309	RIF1-201	7257	XM_004636679	ENSODEP00000005212	2418 (aa)	-	-

Gene Model

Click here to download ENSODEG00000003950's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000003950's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000003950	RIF1	99	72.573	ENSG00000080345	RIF1	97	84.504	Homo_sapiens
ENSODEG00000003950	RIF1	99	72.126	ENSAMEG00000008461	RIF1	100	71.843	Ailuropoda_melanoleuca
ENSODEG00000003950	RIF1	65	48.083	ENSACIG00000017765	rif1	70	48.137	Amphilophus_citrinellus
ENSODEG00000003950	RIF1	64	47.496	ENSAOCG00000017231	rif1	63	47.193	Amphiprion_ocellaris
ENSODEG00000003950	RIF1	70	52.068	ENSAPEG00000013228	rif1	67	51.843	Amphiprion_percula
ENSODEG00000003950	RIF1	67	45.254	ENSATEG00000022887	rif1	68	45.031	Anabas_testudineus
ENSODEG00000003950	RIF1	86	61.598	ENSAPLG00000007092	RIF1	94	61.598	Anas_platyrhynchos
ENSODEG00000003950	RIF1	83	59.281	ENSACAG00000003714	RIF1	88	59.281	Anolis_carolinensis
ENSODEG00000003950	RIF1	99	71.878	ENSANAG00000024840	RIF1	99	71.555	Aotus_nancymaae
ENSODEG00000003950	RIF1	65	49.440	ENSAMXG00000010910	rif1	65	48.960	Astyanax_mexicanus
ENSODEG00000003950	RIF1	94	70.210	ENSBTAG00000021020	RIF1	99	69.739	Bos_taurus
ENSODEG00000003950	RIF1	99	71.273	ENSCJAG00000003138	RIF1	99	70.994	Callithrix_jacchus
ENSODEG00000003950	RIF1	99	70.418	ENSCAFG00000005670	RIF1	96	70.603	Canis_familiaris
ENSODEG00000003950	RIF1	99	70.405	ENSCAFG00020016401	RIF1	99	70.301	Canis_lupus_dingo
ENSODEG00000003950	RIF1	99	70.446	ENSCHIG00000020327	RIF1	99	69.879	Capra_hircus
ENSODEG00000003950	RIF1	99	68.918	ENSTSYG00000008861	RIF1	100	68.637	Carlito_syrichta
ENSODEG00000003950	RIF1	78	86.047	ENSCAPG00000008957	RIF1	93	86.047	Cavia_aperea
ENSODEG00000003950	RIF1	100	80.098	ENSCPOG00000037898	RIF1	100	80.098	Cavia_porcellus
ENSODEG00000003950	RIF1	99	71.908	ENSCCAG00000024760	RIF1	99	71.625	Cebus_capucinus
ENSODEG00000003950	RIF1	99	72.321	ENSCATG00000033353	RIF1	99	71.958	Cercocebus_atys
ENSODEG00000003950	RIF1	96	82.261	ENSCLAG00000001517	RIF1	100	82.177	Chinchilla_lanigera
ENSODEG00000003950	RIF1	99	72.482	ENSCSAG00000016089	RIF1	99	72.119	Chlorocebus_sabaeus
ENSODEG00000003950	RIF1	97	73.504	ENSCHOG00000007187	RIF1	97	73.504	Choloepus_hoffmanni
ENSODEG00000003950	RIF1	90	70.623	ENSCPBG00000025885	RIF1	96	71.810	Chrysemys_picta_bellii
ENSODEG00000003950	RIF1	99	70.991	ENSCANG00000028962	RIF1	100	71.116	Colobus_angolensis_palliatus
ENSODEG00000003950	RIF1	99	68.267	ENSCGRG00001024589	Rif1	100	67.657	Cricetulus_griseus_chok1gshd
ENSODEG00000003950	RIF1	99	68.966	ENSCGRG00000010713	Rif1	100	68.637	Cricetulus_griseus_crigri
ENSODEG00000003950	RIF1	52	47.348	ENSCSEG00000003945	rif1	55	47.348	Cynoglossus_semilaevis
ENSODEG00000003950	RIF1	64	46.667	ENSCVAG00000022479	rif1	78	45.988	Cyprinodon_variegatus
ENSODEG00000003950	RIF1	50	49.161	ENSDARG00000062650	rif1	51	48.960	Danio_rerio
ENSODEG00000003950	RIF1	99	69.333	ENSDNOG00000011194	RIF1	97	69.212	Dasypus_novemcinctus
ENSODEG00000003950	RIF1	91	67.396	ENSETEG00000012421	RIF1	92	67.396	Echinops_telfairi
ENSODEG00000003950	RIF1	95	82.736	ENSEASG00005023434	RIF1	99	83.553	Equus_asinus_asinus
ENSODEG00000003950	RIF1	97	83.934	ENSECAG00000012679	RIF1	99	83.333	Equus_caballus
ENSODEG00000003950	RIF1	64	48.130	ENSELUG00000006826	rif1	56	47.795	Esox_lucius
ENSODEG00000003950	RIF1	99	70.992	ENSFCAG00000029742	RIF1	99	70.539	Felis_catus
ENSODEG00000003950	RIF1	77	65.190	ENSFALG00000013874	RIF1	91	65.190	Ficedula_albicollis
ENSODEG00000003950	RIF1	99	81.189	ENSFDAG00000006538	RIF1	99	81.189	Fukomys_damarensis
ENSODEG00000003950	RIF1	63	47.360	ENSFHEG00000013721	rif1	66	46.369	Fundulus_heteroclitus
ENSODEG00000003950	RIF1	56	47.039	ENSGMOG00000003517	rif1	83	46.776	Gadus_morhua
ENSODEG00000003950	RIF1	79	61.867	ENSGALG00000012484	RIF1	91	62.133	Gallus_gallus
ENSODEG00000003950	RIF1	69	47.105	ENSGAFG00000017196	rif1	71	49.821	Gambusia_affinis
ENSODEG00000003950	RIF1	60	53.061	ENSGACG00000008579	rif1	64	52.610	Gasterosteus_aculeatus
ENSODEG00000003950	RIF1	89	70.997	ENSGAGG00000012595	RIF1	96	72.205	Gopherus_agassizii
ENSODEG00000003950	RIF1	90	85.085	ENSGGOG00000040178	RIF1	96	84.375	Gorilla_gorilla
ENSODEG00000003950	RIF1	76	51.515	ENSHBUG00000007125	rif1	65	51.515	Haplochromis_burtoni
ENSODEG00000003950	RIF1	94	81.346	ENSHGLG00100009807	RIF1	99	81.346	Heterocephalus_glaber_male
ENSODEG00000003950	RIF1	67	45.351	ENSHCOG00000015943	rif1	62	45.194	Hippocampus_comes
ENSODEG00000003950	RIF1	50	50.880	ENSIPUG00000021703	rif1	50	50.520	Ictalurus_punctatus
ENSODEG00000003950	RIF1	99	72.224	ENSSTOG00000020712	RIF1	99	72.048	Ictidomys_tridecemlineatus
ENSODEG00000003950	RIF1	99	66.830	ENSJJAG00000023000	Rif1	99	66.667	Jaculus_jaculus
ENSODEG00000003950	RIF1	79	42.875	ENSKMAG00000002852	rif1	68	47.436	Kryptolebias_marmoratus
ENSODEG00000003950	RIF1	64	48.456	ENSLBEG00000023196	rif1	56	50.342	Labrus_bergylta
ENSODEG00000003950	RIF1	86	62.874	ENSLACG00000005425	RIF1	89	62.874	Latimeria_chalumnae
ENSODEG00000003950	RIF1	68	50.667	ENSLOCG00000002657	rif1	87	45.180	Lepisosteus_oculatus
ENSODEG00000003950	RIF1	99	70.660	ENSLAFG00000009796	RIF1	100	70.376	Loxodonta_africana
ENSODEG00000003950	RIF1	99	72.401	ENSMFAG00000032233	RIF1	99	72.039	Macaca_fascicularis
ENSODEG00000003950	RIF1	99	72.401	ENSMMUG00000008611	RIF1	99	72.039	Macaca_mulatta
ENSODEG00000003950	RIF1	99	72.240	ENSMNEG00000031616	RIF1	99	71.878	Macaca_nemestrina
ENSODEG00000003950	RIF1	99	72.200	ENSMLEG00000042945	RIF1	99	71.837	Mandrillus_leucophaeus
ENSODEG00000003950	RIF1	66	46.530	ENSMAMG00000001745	rif1	65	46.361	Mastacembelus_armatus
ENSODEG00000003950	RIF1	74	45.190	ENSMZEG00005020920	rif1	68	48.553	Maylandia_zebra
ENSODEG00000003950	RIF1	83	60.882	ENSMGAG00000012732	RIF1	90	61.157	Meleagris_gallopavo
ENSODEG00000003950	RIF1	94	82.369	ENSMAUG00000013158	Rif1	100	82.369	Mesocricetus_auratus
ENSODEG00000003950	RIF1	99	73.834	ENSMICG00000046127	RIF1	99	73.834	Microcebus_murinus
ENSODEG00000003950	RIF1	99	67.838	ENSMOCG00000009381	Rif1	100	67.103	Microtus_ochrogaster
ENSODEG00000003950	RIF1	68	47.092	ENSMMOG00000006519	rif1	72	46.603	Mola_mola
ENSODEG00000003950	RIF1	99	56.530	ENSMODG00000003703	RIF1	99	56.394	Monodelphis_domestica
ENSODEG00000003950	RIF1	64	47.289	ENSMALG00000016759	rif1	72	47.153	Monopterus_albus
ENSODEG00000003950	RIF1	99	67.386	MGP_CAROLIEiJ_G0023555	Rif1	100	67.223	Mus_caroli
ENSODEG00000003950	RIF1	99	67.951	ENSMUSG00000036202	Rif1	100	67.789	Mus_musculus
ENSODEG00000003950	RIF1	99	66.395	MGP_PahariEiJ_G0025006	Rif1	100	65.906	Mus_pahari
ENSODEG00000003950	RIF1	99	67.548	MGP_SPRETEiJ_G0024476	Rif1	100	67.548	Mus_spretus
ENSODEG00000003950	RIF1	99	71.394	ENSMPUG00000000371	RIF1	99	70.914	Mustela_putorius_furo
ENSODEG00000003950	RIF1	89	69.914	ENSMLUG00000003376	RIF1	99	69.461	Myotis_lucifugus
ENSODEG00000003950	RIF1	99	69.971	ENSNGAG00000009268	Rif1	99	69.727	Nannospalax_galili
ENSODEG00000003950	RIF1	63	48.560	ENSNBRG00000014257	rif1	68	47.767	Neolamprologus_brichardi
ENSODEG00000003950	RIF1	99	70.586	ENSNLEG00000010955	RIF1	99	70.425	Nomascus_leucogenys
ENSODEG00000003950	RIF1	78	74.479	ENSMEUG00000007601	-	85	73.846	Notamacropus_eugenii
ENSODEG00000003950	RIF1	63	43.011	ENSONIG00000013657	rif1	62	45.809	Oreochromis_niloticus
ENSODEG00000003950	RIF1	57	68.293	ENSOANG00000006078	-	61	68.293	Ornithorhynchus_anatinus
ENSODEG00000003950	RIF1	99	70.351	ENSOCUG00000017435	RIF1	99	70.044	Oryctolagus_cuniculus
ENSODEG00000003950	RIF1	63	45.520	ENSORLG00020001302	rif1	67	45.696	Oryzias_latipes_hni
ENSODEG00000003950	RIF1	63	45.950	ENSORLG00015000009	rif1	66	45.719	Oryzias_latipes_hsok
ENSODEG00000003950	RIF1	62	45.712	ENSOMEG00000021513	rif1	67	45.187	Oryzias_melastigma
ENSODEG00000003950	RIF1	100	70.946	ENSOGAG00000006141	RIF1	100	70.543	Otolemur_garnettii
ENSODEG00000003950	RIF1	99	70.860	ENSOARG00000008930	RIF1	99	70.295	Ovis_aries
ENSODEG00000003950	RIF1	99	72.424	ENSPPAG00000023754	RIF1	99	72.101	Pan_paniscus
ENSODEG00000003950	RIF1	99	70.884	ENSPPRG00000003618	RIF1	99	70.522	Panthera_pardus
ENSODEG00000003950	RIF1	99	71.004	ENSPTIG00000020652	RIF1	99	70.550	Panthera_tigris_altaica
ENSODEG00000003950	RIF1	99	72.464	ENSPTRG00000012534	RIF1	99	72.142	Pan_troglodytes
ENSODEG00000003950	RIF1	99	72.200	ENSPANG00000008525	RIF1	99	71.837	Papio_anubis
ENSODEG00000003950	RIF1	63	45.223	ENSPMGG00000016141	rif1	74	45.223	Periophthalmus_magnuspinnatus
ENSODEG00000003950	RIF1	99	69.177	ENSPEMG00000000446	Rif1	99	68.556	Peromyscus_maniculatus_bairdii
ENSODEG00000003950	RIF1	99	58.753	ENSPCIG00000009185	RIF1	99	55.256	Phascolarctos_cinereus
ENSODEG00000003950	RIF1	69	47.488	ENSPFOG00000017804	rif1	72	47.464	Poecilia_formosa
ENSODEG00000003950	RIF1	63	47.197	ENSPFOG00000000554	-	71	47.197	Poecilia_formosa
ENSODEG00000003950	RIF1	69	47.161	ENSPLAG00000017945	rif1	75	46.863	Poecilia_latipinna
ENSODEG00000003950	RIF1	69	47.533	ENSPREG00000018052	rif1	71	49.955	Poecilia_reticulata
ENSODEG00000003950	RIF1	99	72.453	ENSPPYG00000012846	RIF1	99	72.130	Pongo_abelii
ENSODEG00000003950	RIF1	82	81.818	ENSPCAG00000009032	RIF1	83	81.818	Procavia_capensis
ENSODEG00000003950	RIF1	99	73.633	ENSPCOG00000027888	RIF1	99	73.513	Propithecus_coquereli
ENSODEG00000003950	RIF1	93	81.087	ENSPVAG00000014276	RIF1	95	80.282	Pteropus_vampyrus
ENSODEG00000003950	RIF1	74	45.481	ENSPNYG00000012940	rif1	67	47.283	Pundamilia_nyererei
ENSODEG00000003950	RIF1	65	50.359	ENSPNAG00000016685	rif1	51	49.920	Pygocentrus_nattereri
ENSODEG00000003950	RIF1	99	66.599	ENSRNOG00000054901	Rif1	100	66.111	Rattus_norvegicus
ENSODEG00000003950	RIF1	99	71.584	ENSRBIG00000003704	RIF1	99	71.262	Rhinopithecus_bieti
ENSODEG00000003950	RIF1	99	72.482	ENSRROG00000028206	RIF1	99	72.119	Rhinopithecus_roxellana
ENSODEG00000003950	RIF1	93	70.835	ENSSBOG00000029530	RIF1	96	70.532	Saimiri_boliviensis_boliviensis
ENSODEG00000003950	RIF1	66	49.390	ENSSFOG00015021539	rif1	73	49.371	Scleropages_formosus
ENSODEG00000003950	RIF1	66	47.113	ENSSMAG00000011704	rif1	62	46.769	Scophthalmus_maximus
ENSODEG00000003950	RIF1	63	49.072	ENSSDUG00000015632	rif1	70	47.720	Seriola_dumerili
ENSODEG00000003950	RIF1	60	85.000	ENSSARG00000007161	-	60	85.000	Sorex_araneus
ENSODEG00000003950	RIF1	92	53.608	ENSSPUG00000003062	RIF1	99	53.608	Sphenodon_punctatus
ENSODEG00000003950	RIF1	52	52.772	ENSSPAG00000018359	rif1	78	51.674	Stegastes_partitus
ENSODEG00000003950	RIF1	99	71.400	ENSSSCG00000016395	RIF1	99	71.302	Sus_scrofa
ENSODEG00000003950	RIF1	66	48.268	ENSTRUG00000015808	rif1	71	47.326	Takifugu_rubripes
ENSODEG00000003950	RIF1	64	48.665	ENSTNIG00000011538	rif1	70	46.827	Tetraodon_nigroviridis
ENSODEG00000003950	RIF1	83	87.261	ENSTBEG00000016082	RIF1	82	87.261	Tupaia_belangeri
ENSODEG00000003950	RIF1	99	72.164	ENSTTRG00000011190	RIF1	99	71.762	Tursiops_truncatus
ENSODEG00000003950	RIF1	89	71.660	ENSUAMG00000026385	RIF1	99	71.390	Ursus_americanus
ENSODEG00000003950	RIF1	99	71.796	ENSUMAG00000000337	RIF1	99	71.515	Ursus_maritimus
ENSODEG00000003950	RIF1	99	70.403	ENSVPAG00000002162	RIF1	99	70.346	Vicugna_pacos
ENSODEG00000003950	RIF1	99	70.262	ENSVVUG00000011293	RIF1	99	70.178	Vulpes_vulpes
ENSODEG00000003950	RIF1	59	62.462	ENSXETG00000004530	rif1	83	63.030	Xenopus_tropicalis
ENSODEG00000003950	RIF1	66	46.135	ENSXMAG00000000506	rif1	68	45.703	Xiphophorus_maculatus