EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000004202 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: lupus La protein-like
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 1135 bases
Position: chrJH651576.1:6002205-6003339
Accession: 101568170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000005565	RRM_1	PF00076.22	1.8e-14	1	1
ENSODEP00000005564	RRM_1	PF00076.22	1.8e-14	1	1
ENSODEP00000005565	RRM_3	PF08777.11	1.7e-30	1	1
ENSODEP00000005564	RRM_3	PF08777.11	1.7e-30	1	1
ENSODEP00000005565	La	PF05383.17	9.5e-13	1	1
ENSODEP00000005564	La	PF05383.17	9.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000005663	-	1074	XM_012515399	ENSODEP00000005564	357 (aa)	XP_012370853	-
ENSODET00000005664	-	1068	-	ENSODEP00000005565	355 (aa)	-	-

Gene Model

Click here to download ENSODEG00000004202's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000004202's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000004202	-	100	88.976	ENSG00000138385	SSB	100	96.667	Homo_sapiens
ENSODEG00000004202	-	99	55.163	ENSAPOG00000003448	ssb	93	55.435	Acanthochromis_polyacanthus
ENSODEG00000004202	-	100	85.242	ENSAMEG00000010507	SSB	94	85.242	Ailuropoda_melanoleuca
ENSODEG00000004202	-	92	58.036	ENSACIG00000001738	ssb	91	55.652	Amphilophus_citrinellus
ENSODEG00000004202	-	99	55.801	ENSAOCG00000020398	ssb	93	56.111	Amphiprion_ocellaris
ENSODEG00000004202	-	99	55.978	ENSAPEG00000020395	ssb	93	56.250	Amphiprion_percula
ENSODEG00000004202	-	99	57.219	ENSATEG00000016884	ssb	93	57.487	Anabas_testudineus
ENSODEG00000004202	-	99	68.434	ENSAPLG00000006109	SSB	93	69.192	Anas_platyrhynchos
ENSODEG00000004202	-	100	64.644	ENSACAG00000017008	SSB	93	64.644	Anolis_carolinensis
ENSODEG00000004202	-	100	80.672	ENSANAG00000027195	-	93	79.365	Aotus_nancymaae
ENSODEG00000004202	-	99	53.388	ENSACLG00000010798	ssb	93	53.659	Astatotilapia_calliptera
ENSODEG00000004202	-	99	53.646	ENSAMXG00000012606	ssb	94	54.427	Astyanax_mexicanus
ENSODEG00000004202	-	100	88.360	ENSBTAG00000008716	SSB	93	88.360	Bos_taurus
ENSODEG00000004202	-	80	33.448	WBGene00016653	C44E4.4	83	30.931	Caenorhabditis_elegans
ENSODEG00000004202	-	100	89.153	ENSCJAG00000045073	SSB	93	89.153	Callithrix_jacchus
ENSODEG00000004202	-	100	88.654	ENSCAFG00000012418	SSB	93	88.654	Canis_familiaris
ENSODEG00000004202	-	100	88.654	ENSCAFG00020002900	SSB	93	88.654	Canis_lupus_dingo
ENSODEG00000004202	-	100	88.624	ENSCHIG00000022624	-	93	88.624	Capra_hircus
ENSODEG00000004202	-	100	86.685	ENSCHIG00000022196	-	93	86.685	Capra_hircus
ENSODEG00000004202	-	100	88.360	ENSTSYG00000000097	SSB	93	88.360	Carlito_syrichta
ENSODEG00000004202	-	100	91.534	ENSCPOG00000003338	SSB	93	91.534	Cavia_porcellus
ENSODEG00000004202	-	100	89.418	ENSCCAG00000035147	SSB	93	89.418	Cebus_capucinus
ENSODEG00000004202	-	83	79.878	ENSCATG00000036701	SSB	93	79.878	Cercocebus_atys
ENSODEG00000004202	-	92	69.429	ENSCATG00000042909	-	90	69.429	Cercocebus_atys
ENSODEG00000004202	-	100	90.741	ENSCLAG00000015617	-	93	90.741	Chinchilla_lanigera
ENSODEG00000004202	-	98	81.572	ENSCSAG00000018390	-	93	81.572	Chlorocebus_sabaeus
ENSODEG00000004202	-	100	89.418	ENSCSAG00000015200	SSB	83	89.418	Chlorocebus_sabaeus
ENSODEG00000004202	-	100	88.360	ENSCHOG00000007763	SSB	93	88.360	Choloepus_hoffmanni
ENSODEG00000004202	-	99	75.591	ENSCPBG00000006519	SSB	93	76.378	Chrysemys_picta_bellii
ENSODEG00000004202	-	100	89.418	ENSCANG00000027695	SSB	93	89.418	Colobus_angolensis_palliatus
ENSODEG00000004202	-	100	75.066	ENSCANG00000033240	-	93	75.066	Colobus_angolensis_palliatus
ENSODEG00000004202	-	90	72.965	ENSCANG00000028838	-	87	72.965	Colobus_angolensis_palliatus
ENSODEG00000004202	-	100	75.591	ENSCGRG00001024831	Ssb	93	77.165	Cricetulus_griseus_chok1gshd
ENSODEG00000004202	-	100	75.591	ENSCGRG00000005387	Ssb	93	77.165	Cricetulus_griseus_crigri
ENSODEG00000004202	-	99	56.000	ENSCSEG00000011599	ssb	94	56.533	Cynoglossus_semilaevis
ENSODEG00000004202	-	99	55.733	ENSCVAG00000021558	ssb	94	56.000	Cyprinodon_variegatus
ENSODEG00000004202	-	99	54.881	ENSDARG00000029252	ssb	94	54.881	Danio_rerio
ENSODEG00000004202	-	100	88.624	ENSDNOG00000013450	SSB	93	88.624	Dasypus_novemcinctus
ENSODEG00000004202	-	100	79.630	ENSDORG00000005543	Ssb	93	81.217	Dipodomys_ordii
ENSODEG00000004202	-	91	32.845	FBgn0011638	La	83	33.333	Drosophila_melanogaster
ENSODEG00000004202	-	65	92.857	ENSETEG00000004614	-	60	92.857	Echinops_telfairi
ENSODEG00000004202	-	98	45.902	ENSEBUG00000001237	ssb	91	46.995	Eptatretus_burgeri
ENSODEG00000004202	-	100	89.947	ENSEASG00005022835	SSB	93	89.947	Equus_asinus_asinus
ENSODEG00000004202	-	100	91.233	ENSECAG00000018495	SSB	93	91.233	Equus_caballus
ENSODEG00000004202	-	100	65.070	ENSEEUG00000008077	SSB	92	65.070	Erinaceus_europaeus
ENSODEG00000004202	-	99	57.294	ENSELUG00000020929	ssb	94	57.560	Esox_lucius
ENSODEG00000004202	-	100	88.654	ENSFCAG00000011601	SSB	93	88.654	Felis_catus
ENSODEG00000004202	-	99	71.618	ENSFALG00000000930	SSB	93	73.016	Ficedula_albicollis
ENSODEG00000004202	-	100	90.741	ENSFDAG00000000598	SSB	93	90.741	Fukomys_damarensis
ENSODEG00000004202	-	79	53.512	ENSFHEG00000003268	ssb	93	54.515	Fundulus_heteroclitus
ENSODEG00000004202	-	99	54.068	ENSGMOG00000002664	ssb	95	54.593	Gadus_morhua
ENSODEG00000004202	-	99	72.679	ENSGALG00000009677	SSB	93	72.679	Gallus_gallus
ENSODEG00000004202	-	99	54.762	ENSGAFG00000002749	ssb	94	55.026	Gambusia_affinis
ENSODEG00000004202	-	99	52.770	ENSGACG00000005107	ssb	94	53.562	Gasterosteus_aculeatus
ENSODEG00000004202	-	99	75.328	ENSGAGG00000007807	SSB	93	76.115	Gopherus_agassizii
ENSODEG00000004202	-	56	83.111	ENSGGOG00000023471	-	92	83.111	Gorilla_gorilla
ENSODEG00000004202	-	100	73.810	ENSGGOG00000024891	-	93	73.810	Gorilla_gorilla
ENSODEG00000004202	-	99	52.846	ENSHBUG00000006584	ssb	93	53.117	Haplochromis_burtoni
ENSODEG00000004202	-	100	89.091	ENSHGLG00000017580	-	93	89.091	Heterocephalus_glaber_female
ENSODEG00000004202	-	100	82.880	ENSHGLG00000005832	-	93	82.880	Heterocephalus_glaber_female
ENSODEG00000004202	-	100	83.069	ENSHGLG00000004478	-	93	83.069	Heterocephalus_glaber_female
ENSODEG00000004202	-	100	89.091	ENSHGLG00100003084	-	93	89.091	Heterocephalus_glaber_male
ENSODEG00000004202	-	100	79.032	ENSHGLG00100008767	-	93	79.032	Heterocephalus_glaber_male
ENSODEG00000004202	-	99	52.533	ENSHCOG00000019011	ssb	94	53.209	Hippocampus_comes
ENSODEG00000004202	-	99	56.136	ENSIPUG00000003681	SSB	94	56.919	Ictalurus_punctatus
ENSODEG00000004202	-	100	89.655	ENSSTOG00000008416	SSB	93	89.655	Ictidomys_tridecemlineatus
ENSODEG00000004202	-	100	77.436	ENSJJAG00000023158	-	93	77.436	Jaculus_jaculus
ENSODEG00000004202	-	94	70.940	ENSJJAG00000016250	-	94	70.940	Jaculus_jaculus
ENSODEG00000004202	-	99	55.764	ENSKMAG00000017317	ssb	93	55.764	Kryptolebias_marmoratus
ENSODEG00000004202	-	99	53.908	ENSLBEG00000017345	ssb	94	54.178	Labrus_bergylta
ENSODEG00000004202	-	99	67.018	ENSLACG00000014056	SSB	93	67.018	Latimeria_chalumnae
ENSODEG00000004202	-	99	63.852	ENSLOCG00000007933	ssb	93	65.172	Lepisosteus_oculatus
ENSODEG00000004202	-	100	73.475	ENSLAFG00000028909	-	93	73.475	Loxodonta_africana
ENSODEG00000004202	-	100	80.506	ENSLAFG00000000867	-	94	82.532	Loxodonta_africana
ENSODEG00000004202	-	78	70.290	ENSLAFG00000026721	-	90	70.290	Loxodonta_africana
ENSODEG00000004202	-	91	77.778	ENSMFAG00000041478	-	90	77.778	Macaca_fascicularis
ENSODEG00000004202	-	100	89.418	ENSMFAG00000039066	SSB	93	89.418	Macaca_fascicularis
ENSODEG00000004202	-	100	76.676	ENSMMUG00000011724	-	90	76.676	Macaca_mulatta
ENSODEG00000004202	-	92	63.714	ENSMMUG00000039889	-	91	64.000	Macaca_mulatta
ENSODEG00000004202	-	100	89.418	ENSMMUG00000023051	SSB	93	89.418	Macaca_mulatta
ENSODEG00000004202	-	100	76.501	ENSMNEG00000028321	SSB	93	76.501	Macaca_nemestrina
ENSODEG00000004202	-	91	77.778	ENSMNEG00000034698	-	90	77.778	Macaca_nemestrina
ENSODEG00000004202	-	100	64.228	ENSMLEG00000042644	-	92	64.228	Mandrillus_leucophaeus
ENSODEG00000004202	-	100	89.418	ENSMLEG00000035717	SSB	93	89.418	Mandrillus_leucophaeus
ENSODEG00000004202	-	99	57.909	ENSMAMG00000004800	ssb	93	58.177	Mastacembelus_armatus
ENSODEG00000004202	-	99	53.388	ENSMZEG00005005749	ssb	93	53.659	Maylandia_zebra
ENSODEG00000004202	-	99	72.944	ENSMGAG00000010328	SSB	93	72.944	Meleagris_gallopavo
ENSODEG00000004202	-	98	86.236	ENSMICG00000033304	-	89	86.236	Microcebus_murinus
ENSODEG00000004202	-	99	89.628	ENSMICG00000028252	-	93	89.628	Microcebus_murinus
ENSODEG00000004202	-	100	62.963	ENSMODG00000019271	-	92	62.963	Monodelphis_domestica
ENSODEG00000004202	-	83	81.061	ENSMODG00000007027	-	92	81.061	Monodelphis_domestica
ENSODEG00000004202	-	100	74.740	ENSMODG00000008227	-	93	76.562	Monodelphis_domestica
ENSODEG00000004202	-	91	55.718	ENSMALG00000008045	ssb	82	59.238	Monopterus_albus
ENSODEG00000004202	-	100	75.321	MGP_CAROLIEiJ_G0023629	-	85	91.720	Mus_caroli
ENSODEG00000004202	-	100	74.550	ENSMUSG00000068882	Ssb	85	91.720	Mus_musculus
ENSODEG00000004202	-	100	74.742	MGP_PahariEiJ_G0025081	-	85	91.720	Mus_pahari
ENSODEG00000004202	-	100	74.550	MGP_SPRETEiJ_G0024551	Ssb	85	91.720	Mus_spretus
ENSODEG00000004202	-	100	89.418	ENSMPUG00000000785	SSB	93	89.418	Mustela_putorius_furo
ENSODEG00000004202	-	100	85.897	ENSMLUG00000016316	SSB	94	85.897	Myotis_lucifugus
ENSODEG00000004202	-	99	53.243	ENSNBRG00000012661	ssb	93	53.514	Neolamprologus_brichardi
ENSODEG00000004202	-	100	89.683	ENSNLEG00000004958	SSB	93	89.683	Nomascus_leucogenys
ENSODEG00000004202	-	100	65.172	ENSNLEG00000028754	-	92	65.699	Nomascus_leucogenys
ENSODEG00000004202	-	68	87.243	ENSMEUG00000001650	-	98	87.243	Notamacropus_eugenii
ENSODEG00000004202	-	57	94.839	ENSOPRG00000008475	-	100	69.655	Ochotona_princeps
ENSODEG00000004202	-	99	52.432	ENSONIG00000008776	ssb	93	52.703	Oreochromis_niloticus
ENSODEG00000004202	-	100	80.423	ENSOANG00000008543	SSB	93	81.481	Ornithorhynchus_anatinus
ENSODEG00000004202	-	100	89.418	ENSOCUG00000010396	SSB	93	89.947	Oryctolagus_cuniculus
ENSODEG00000004202	-	99	56.000	ENSORLG00000017208	ssb	94	56.800	Oryzias_latipes
ENSODEG00000004202	-	99	56.117	ENSORLG00020022574	ssb	94	56.649	Oryzias_latipes_hni
ENSODEG00000004202	-	99	56.000	ENSORLG00015016592	ssb	94	56.267	Oryzias_latipes_hsok
ENSODEG00000004202	-	99	55.467	ENSOMEG00000003193	ssb	94	56.000	Oryzias_melastigma
ENSODEG00000004202	-	100	83.797	ENSOGAG00000029768	SSB	94	83.797	Otolemur_garnettii
ENSODEG00000004202	-	100	88.095	ENSOARG00000002906	SSB	93	88.095	Ovis_aries
ENSODEG00000004202	-	100	72.487	ENSPPAG00000032427	-	93	72.487	Pan_paniscus
ENSODEG00000004202	-	98	72.581	ENSPPAG00000006189	-	96	72.581	Pan_paniscus
ENSODEG00000004202	-	100	88.976	ENSPPAG00000042673	SSB	93	88.976	Pan_paniscus
ENSODEG00000004202	-	100	88.654	ENSPPRG00000006599	SSB	93	88.654	Panthera_pardus
ENSODEG00000004202	-	100	88.391	ENSPTIG00000011021	SSB	91	88.391	Panthera_tigris_altaica
ENSODEG00000004202	-	100	68.519	ENSPTRG00000042880	-	92	68.519	Pan_troglodytes
ENSODEG00000004202	-	100	88.976	ENSPTRG00000012620	SSB	93	88.976	Pan_troglodytes
ENSODEG00000004202	-	92	69.855	ENSPANG00000034126	-	90	70.435	Papio_anubis
ENSODEG00000004202	-	100	89.418	ENSPANG00000007440	SSB	93	89.418	Papio_anubis
ENSODEG00000004202	-	98	59.299	ENSPANG00000031877	-	87	59.299	Papio_anubis
ENSODEG00000004202	-	99	61.702	ENSPKIG00000019325	ssb	93	62.069	Paramormyrops_kingsleyae
ENSODEG00000004202	-	99	72.441	ENSPSIG00000002265	SSB	87	73.228	Pelodiscus_sinensis
ENSODEG00000004202	-	90	53.550	ENSPMGG00000020075	ssb	89	53.550	Periophthalmus_magnuspinnatus
ENSODEG00000004202	-	91	46.064	ENSPMAG00000002982	ssb	80	46.667	Petromyzon_marinus
ENSODEG00000004202	-	100	80.475	ENSPCIG00000028591	-	93	81.003	Phascolarctos_cinereus
ENSODEG00000004202	-	99	55.733	ENSPFOG00000009650	ssb	94	56.000	Poecilia_formosa
ENSODEG00000004202	-	99	55.467	ENSPLAG00000020498	ssb	94	56.000	Poecilia_latipinna
ENSODEG00000004202	-	99	55.467	ENSPMEG00000001051	ssb	94	56.000	Poecilia_mexicana
ENSODEG00000004202	-	92	57.310	ENSPREG00000003708	ssb	89	57.602	Poecilia_reticulata
ENSODEG00000004202	-	100	89.683	ENSPPYG00000012919	SSB	93	89.683	Pongo_abelii
ENSODEG00000004202	-	100	82.540	ENSPCAG00000010276	SSB	99	83.598	Procavia_capensis
ENSODEG00000004202	-	100	76.984	ENSPCOG00000023189	-	93	76.984	Propithecus_coquereli
ENSODEG00000004202	-	100	86.243	ENSPCOG00000015741	-	93	86.243	Propithecus_coquereli
ENSODEG00000004202	-	99	88.385	ENSPVAG00000006615	SSB	96	91.988	Pteropus_vampyrus
ENSODEG00000004202	-	99	53.388	ENSPNYG00000006444	ssb	93	53.659	Pundamilia_nyererei
ENSODEG00000004202	-	99	55.236	ENSPNAG00000011708	ssb	94	56.021	Pygocentrus_nattereri
ENSODEG00000004202	-	100	75.321	ENSRNOG00000007998	Ssb	93	75.321	Rattus_norvegicus
ENSODEG00000004202	-	100	76.064	ENSRNOG00000011606	AABR07061825.1	93	76.064	Rattus_norvegicus
ENSODEG00000004202	-	100	74.536	ENSRBIG00000041232	-	98	74.536	Rhinopithecus_bieti
ENSODEG00000004202	-	92	66.667	ENSRBIG00000029918	-	90	66.952	Rhinopithecus_bieti
ENSODEG00000004202	-	100	72.585	ENSRBIG00000041972	SSB	93	73.368	Rhinopithecus_bieti
ENSODEG00000004202	-	95	81.768	ENSRBIG00000041608	-	98	81.768	Rhinopithecus_bieti
ENSODEG00000004202	-	95	85.912	ENSRROG00000034102	-	89	85.912	Rhinopithecus_roxellana
ENSODEG00000004202	-	92	77.493	ENSRROG00000007149	-	91	77.493	Rhinopithecus_roxellana
ENSODEG00000004202	-	100	89.418	ENSRROG00000040346	SSB	93	89.418	Rhinopithecus_roxellana
ENSODEG00000004202	-	100	75.066	ENSRROG00000031684	-	95	75.066	Rhinopithecus_roxellana
ENSODEG00000004202	-	100	89.683	ENSSBOG00000027204	SSB	93	89.683	Saimiri_boliviensis_boliviensis
ENSODEG00000004202	-	100	79.947	ENSSHAG00000018062	SSB	93	80.475	Sarcophilus_harrisii
ENSODEG00000004202	-	99	63.780	ENSSFOG00015000550	ssb	94	64.042	Scleropages_formosus
ENSODEG00000004202	-	99	54.545	ENSSMAG00000013885	ssb	92	56.560	Scophthalmus_maximus
ENSODEG00000004202	-	99	56.568	ENSSDUG00000020117	ssb	93	56.836	Seriola_dumerili
ENSODEG00000004202	-	99	54.324	ENSSLDG00000002525	ssb	93	54.324	Seriola_lalandi_dorsalis
ENSODEG00000004202	-	100	80.371	ENSSARG00000007747	SSB	99	80.371	Sorex_araneus
ENSODEG00000004202	-	99	74.074	ENSSPUG00000012112	SSB	93	74.868	Sphenodon_punctatus
ENSODEG00000004202	-	99	55.435	ENSSPAG00000005696	ssb	93	56.522	Stegastes_partitus
ENSODEG00000004202	-	98	73.925	ENSSSCG00000015938	SSB	91	75.815	Sus_scrofa
ENSODEG00000004202	-	99	70.789	ENSTGUG00000007942	SSB	93	72.105	Taeniopygia_guttata
ENSODEG00000004202	-	99	55.795	ENSTRUG00000017839	ssb	93	56.452	Takifugu_rubripes
ENSODEG00000004202	-	92	58.997	ENSTNIG00000000915	ssb	93	58.997	Tetraodon_nigroviridis
ENSODEG00000004202	-	80	96.591	ENSTBEG00000009056	SSB	75	96.591	Tupaia_belangeri
ENSODEG00000004202	-	100	88.391	ENSTTRG00000002152	SSB	93	88.391	Tursiops_truncatus
ENSODEG00000004202	-	92	92.035	ENSUAMG00000027833	SSB	89	92.035	Ursus_americanus
ENSODEG00000004202	-	100	88.918	ENSUMAG00000013907	SSB	93	88.918	Ursus_maritimus
ENSODEG00000004202	-	100	88.624	ENSVPAG00000007183	SSB	93	88.624	Vicugna_pacos
ENSODEG00000004202	-	100	88.654	ENSVVUG00000016573	SSB	72	88.654	Vulpes_vulpes
ENSODEG00000004202	-	99	60.326	ENSXETG00000025402	ssb	93	58.500	Xenopus_tropicalis
ENSODEG00000004202	-	92	55.132	ENSXCOG00000019109	ssb	89	55.425	Xiphophorus_couchianus
ENSODEG00000004202	-	99	54.762	ENSXMAG00000004888	ssb	94	55.026	Xiphophorus_maculatus