EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000004305 (Gene tree)
Gene ID: 101562871
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 8104 bases
Position: chrJH651575.1:871216-879319
Accession: 101562871
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000005715	LSM	PF01423.22	5.4e-21	1	1
ENSODEP00000005716	LSM	PF01423.22	6.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000005814	-	693	XM_004634314	ENSODEP00000005715	230 (aa)	-	-
ENSODET00000005815	-	696	-	ENSODEP00000005716	231 (aa)	XP_023574360	UPI000002B2D7

Gene Model

Click here to download ENSODEG00000004305's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000004305's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000004305	-	99	92.140	ENSODEG00000019708	-	93	92.308
ENSODEG00000004305	-	98	96.460	ENSODEG00000016060	-	95	96.460
ENSODEG00000004305	-	98	74.786	ENSODEG00000016065	-	73	88.820
ENSODEG00000004305	-	96	92.760	ENSODEG00000013478	-	92	92.760
ENSODEG00000004305	-	96	92.308	ENSODEG00000020110	-	92	92.308

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000004305	-	100	100.000	ENSG00000125835	SNRPB	100	100.000	Homo_sapiens
ENSODEG00000004305	-	78	92.818	ENSAPOG00000019606	snrpb	56	94.643	Acanthochromis_polyacanthus
ENSODEG00000004305	-	99	100.000	ENSAMEG00000011353	SNRPB	98	96.234	Ailuropoda_melanoleuca
ENSODEG00000004305	-	76	92.571	ENSACIG00000014480	snrpb	71	94.444	Amphilophus_citrinellus
ENSODEG00000004305	-	78	92.818	ENSAOCG00000006876	snrpb	69	94.643	Amphiprion_ocellaris
ENSODEG00000004305	-	78	92.818	ENSAPEG00000021585	snrpb	71	94.643	Amphiprion_percula
ENSODEG00000004305	-	78	92.265	ENSATEG00000009836	snrpb	69	94.048	Anabas_testudineus
ENSODEG00000004305	-	92	95.305	ENSACAG00000002053	SNRPB	92	95.305	Anolis_carolinensis
ENSODEG00000004305	-	100	100.000	ENSANAG00000024443	-	100	100.000	Aotus_nancymaae
ENSODEG00000004305	-	99	93.043	ENSANAG00000036271	-	76	93.122	Aotus_nancymaae
ENSODEG00000004305	-	78	92.818	ENSACLG00000014707	snrpb	69	94.643	Astatotilapia_calliptera
ENSODEG00000004305	-	92	89.091	ENSAMXG00000029434	snrpb	92	88.636	Astyanax_mexicanus
ENSODEG00000004305	-	100	99.567	ENSBTAG00000001038	SNRPB	100	99.567	Bos_taurus
ENSODEG00000004305	-	100	100.000	ENSCJAG00000020971	-	100	100.000	Callithrix_jacchus
ENSODEG00000004305	-	93	92.056	ENSCJAG00000023097	-	79	92.063	Callithrix_jacchus
ENSODEG00000004305	-	100	100.000	ENSCAFG00000006693	-	100	100.000	Canis_familiaris
ENSODEG00000004305	-	81	88.421	ENSCAFG00000031109	-	79	84.737	Canis_familiaris
ENSODEG00000004305	-	99	100.000	ENSCAFG00020016981	-	99	96.234	Canis_lupus_dingo
ENSODEG00000004305	-	100	99.567	ENSCHIG00000025449	-	100	99.567	Capra_hircus
ENSODEG00000004305	-	97	78.829	ENSTSYG00000032303	-	55	84.286	Carlito_syrichta
ENSODEG00000004305	-	100	100.000	ENSTSYG00000014498	-	100	100.000	Carlito_syrichta
ENSODEG00000004305	-	99	100.000	ENSCAPG00000012669	SNRPB	100	100.000	Cavia_aperea
ENSODEG00000004305	-	100	100.000	ENSCPOG00000039408	SNRPB	100	100.000	Cavia_porcellus
ENSODEG00000004305	-	92	70.455	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSODEG00000004305	-	100	100.000	ENSCCAG00000026002	SNRPB	100	100.000	Cebus_capucinus
ENSODEG00000004305	-	100	100.000	ENSCATG00000030230	SNRPB	100	100.000	Cercocebus_atys
ENSODEG00000004305	-	98	100.000	ENSCLAG00000012442	SNRPB	95	100.000	Chinchilla_lanigera
ENSODEG00000004305	-	100	100.000	ENSCSAG00000010840	SNRPB	100	100.000	Chlorocebus_sabaeus
ENSODEG00000004305	-	99	96.507	ENSCPBG00000026801	SNRPB	99	96.507	Chrysemys_picta_bellii
ENSODEG00000004305	-	100	100.000	ENSCANG00000019461	SNRPB	100	100.000	Colobus_angolensis_palliatus
ENSODEG00000004305	-	100	100.000	ENSCGRG00001023046	Snrpb	100	100.000	Cricetulus_griseus_chok1gshd
ENSODEG00000004305	-	96	100.000	ENSCGRG00000010423	Snrpb	98	100.000	Cricetulus_griseus_crigri
ENSODEG00000004305	-	79	92.896	ENSCSEG00000020328	snrpb	70	94.643	Cynoglossus_semilaevis
ENSODEG00000004305	-	73	92.857	ENSDARG00000011125	snrpb	69	94.643	Danio_rerio
ENSODEG00000004305	-	75	94.220	ENSDNOG00000007896	-	71	94.220	Dasypus_novemcinctus
ENSODEG00000004305	-	99	100.000	ENSDNOG00000015545	-	99	96.234	Dasypus_novemcinctus
ENSODEG00000004305	-	97	99.552	ENSDORG00000029558	Snrpb	97	99.552	Dipodomys_ordii
ENSODEG00000004305	-	65	70.470	FBgn0262601	SmB	74	70.470	Drosophila_melanogaster
ENSODEG00000004305	-	92	78.182	ENSETEG00000006830	SNRPB	96	78.182	Echinops_telfairi
ENSODEG00000004305	-	78	80.108	ENSEBUG00000007467	SNRPB	62	88.591	Eptatretus_burgeri
ENSODEG00000004305	-	100	99.567	ENSEASG00005012991	SNRPB	100	99.567	Equus_asinus_asinus
ENSODEG00000004305	-	100	100.000	ENSECAG00000011944	SNRPB	100	100.000	Equus_caballus
ENSODEG00000004305	-	98	100.000	ENSEEUG00000015568	SNRPB	80	100.000	Erinaceus_europaeus
ENSODEG00000004305	-	63	95.862	ENSELUG00000014564	snrpb	71	93.210	Esox_lucius
ENSODEG00000004305	-	100	100.000	ENSFCAG00000034090	-	100	100.000	Felis_catus
ENSODEG00000004305	-	89	92.019	ENSFALG00000004866	SNRPB	92	95.775	Ficedula_albicollis
ENSODEG00000004305	-	100	100.000	ENSFDAG00000009937	SNRPB	100	100.000	Fukomys_damarensis
ENSODEG00000004305	-	99	96.070	ENSGALG00000035421	SNRPN	99	92.887	Gallus_gallus
ENSODEG00000004305	-	74	93.023	ENSGAFG00000019558	snrpb	72	94.012	Gambusia_affinis
ENSODEG00000004305	-	79	91.257	ENSGACG00000003262	snrpb	70	94.643	Gasterosteus_aculeatus
ENSODEG00000004305	-	99	96.507	ENSGAGG00000001308	SNRPB	99	93.305	Gopherus_agassizii
ENSODEG00000004305	-	100	100.000	ENSGGOG00000016138	SNRPB	100	100.000	Gorilla_gorilla
ENSODEG00000004305	-	78	92.818	ENSHBUG00000008369	snrpb	69	94.643	Haplochromis_burtoni
ENSODEG00000004305	-	100	100.000	ENSHGLG00000016241	-	100	100.000	Heterocephalus_glaber_female
ENSODEG00000004305	-	65	90.000	ENSHGLG00000016505	-	72	90.000	Heterocephalus_glaber_female
ENSODEG00000004305	-	65	90.000	ENSHGLG00100004178	-	72	90.000	Heterocephalus_glaber_male
ENSODEG00000004305	-	100	100.000	ENSHGLG00100012877	-	100	100.000	Heterocephalus_glaber_male
ENSODEG00000004305	-	79	92.350	ENSHCOG00000014888	snrpb	70	94.643	Hippocampus_comes
ENSODEG00000004305	-	73	92.857	ENSIPUG00000024569	SNRPB	70	94.643	Ictalurus_punctatus
ENSODEG00000004305	-	94	81.944	ENSSTOG00000027821	-	62	99.265	Ictidomys_tridecemlineatus
ENSODEG00000004305	-	99	98.253	ENSSTOG00000033664	-	99	94.561	Ictidomys_tridecemlineatus
ENSODEG00000004305	-	100	100.000	ENSJJAG00000024170	Snrpb	100	100.000	Jaculus_jaculus
ENSODEG00000004305	-	75	94.220	ENSKMAG00000014494	snrpb	68	95.238	Kryptolebias_marmoratus
ENSODEG00000004305	-	79	92.350	ENSLBEG00000005678	snrpb	70	94.643	Labrus_bergylta
ENSODEG00000004305	-	96	93.213	ENSLACG00000011459	SNRPB	92	93.213	Latimeria_chalumnae
ENSODEG00000004305	-	73	94.048	ENSLOCG00000002687	snrpb	70	95.238	Lepisosteus_oculatus
ENSODEG00000004305	-	99	96.053	ENSLAFG00000017588	SNRPB	99	96.053	Loxodonta_africana
ENSODEG00000004305	-	100	100.000	ENSMFAG00000038756	SNRPB	100	100.000	Macaca_fascicularis
ENSODEG00000004305	-	100	100.000	ENSMMUG00000010050	SNRPB	100	100.000	Macaca_mulatta
ENSODEG00000004305	-	100	100.000	ENSMNEG00000027954	SNRPB	100	100.000	Macaca_nemestrina
ENSODEG00000004305	-	100	100.000	ENSMLEG00000022346	SNRPB	100	100.000	Mandrillus_leucophaeus
ENSODEG00000004305	-	78	92.778	ENSMAMG00000009294	snrpb	67	94.611	Mastacembelus_armatus
ENSODEG00000004305	-	78	92.818	ENSMZEG00005011856	snrpb	69	94.643	Maylandia_zebra
ENSODEG00000004305	-	100	99.567	ENSMICG00000016519	SNRPB	100	99.567	Microcebus_murinus
ENSODEG00000004305	-	97	85.333	ENSMICG00000015983	-	87	89.947	Microcebus_murinus
ENSODEG00000004305	-	100	99.567	ENSMOCG00000002892	-	100	99.567	Microtus_ochrogaster
ENSODEG00000004305	-	72	70.060	ENSMOCG00000021362	-	72	73.410	Microtus_ochrogaster
ENSODEG00000004305	-	79	92.857	ENSMMOG00000013226	snrpb	71	94.611	Mola_mola
ENSODEG00000004305	-	78	92.265	ENSMALG00000020839	snrpb	56	94.048	Monopterus_albus
ENSODEG00000004305	-	100	99.567	MGP_CAROLIEiJ_G0024293	Snrpb	100	99.567	Mus_caroli
ENSODEG00000004305	-	100	99.567	ENSMUSG00000027404	Snrpb	100	99.567	Mus_musculus
ENSODEG00000004305	-	100	99.567	MGP_PahariEiJ_G0025738	Snrpb	100	99.567	Mus_pahari
ENSODEG00000004305	-	100	99.567	MGP_SPRETEiJ_G0025213	Snrpb	100	99.567	Mus_spretus
ENSODEG00000004305	-	100	100.000	ENSMPUG00000009283	SNRPB	100	100.000	Mustela_putorius_furo
ENSODEG00000004305	-	99	96.943	ENSMLUG00000016951	SNRPB	95	96.943	Myotis_lucifugus
ENSODEG00000004305	-	100	100.000	ENSNGAG00000012051	Snrpb	100	100.000	Nannospalax_galili
ENSODEG00000004305	-	78	90.055	ENSNBRG00000006353	snrpb	62	93.293	Neolamprologus_brichardi
ENSODEG00000004305	-	99	100.000	ENSNLEG00000029067	SNRPB	96	100.000	Nomascus_leucogenys
ENSODEG00000004305	-	97	97.333	ENSMEUG00000015625	SNRPB	100	97.333	Notamacropus_eugenii
ENSODEG00000004305	-	78	92.818	ENSONIG00000000248	snrpb	69	94.643	Oreochromis_niloticus
ENSODEG00000004305	-	77	93.296	ENSOCUG00000022423	-	86	96.429	Oryctolagus_cuniculus
ENSODEG00000004305	-	92	71.831	ENSOCUG00000026813	-	63	70.946	Oryctolagus_cuniculus
ENSODEG00000004305	-	99	96.943	ENSOCUG00000028215	-	99	93.305	Oryctolagus_cuniculus
ENSODEG00000004305	-	99	99.563	ENSOCUG00000014042	-	99	95.816	Oryctolagus_cuniculus
ENSODEG00000004305	-	93	94.884	ENSOCUG00000021456	-	78	95.767	Oryctolagus_cuniculus
ENSODEG00000004305	-	78	92.265	ENSORLG00000021862	snrpb	69	94.643	Oryzias_latipes
ENSODEG00000004305	-	99	100.000	ENSOGAG00000016149	SNRPB	99	96.234	Otolemur_garnettii
ENSODEG00000004305	-	100	99.567	ENSOARG00000006740	SNRPB	100	99.567	Ovis_aries
ENSODEG00000004305	-	100	100.000	ENSPPAG00000036314	SNRPB	100	100.000	Pan_paniscus
ENSODEG00000004305	-	100	100.000	ENSPPRG00000003233	-	100	100.000	Panthera_pardus
ENSODEG00000004305	-	99	100.000	ENSPTIG00000007468	SNRPB	99	100.000	Panthera_tigris_altaica
ENSODEG00000004305	-	100	100.000	ENSPTRG00000013176	SNRPB	100	100.000	Pan_troglodytes
ENSODEG00000004305	-	99	100.000	ENSPANG00000020362	SNRPB	99	96.234	Papio_anubis
ENSODEG00000004305	-	92	89.091	ENSPKIG00000002865	snrpb	92	89.091	Paramormyrops_kingsleyae
ENSODEG00000004305	-	99	96.491	ENSPSIG00000014125	SNRPB	98	93.305	Pelodiscus_sinensis
ENSODEG00000004305	-	77	90.449	ENSPMGG00000016349	snrpb	69	92.025	Periophthalmus_magnuspinnatus
ENSODEG00000004305	-	100	100.000	ENSPEMG00000007948	Snrpb	100	100.000	Peromyscus_maniculatus_bairdii
ENSODEG00000004305	-	99	97.807	ENSPCIG00000004694	SNRPB	99	94.142	Phascolarctos_cinereus
ENSODEG00000004305	-	82	76.842	ENSPREG00000015515	snrpb	62	95.556	Poecilia_reticulata
ENSODEG00000004305	-	100	100.000	ENSPPYG00000010841	SNRPB	100	100.000	Pongo_abelii
ENSODEG00000004305	-	100	100.000	ENSPCOG00000013686	SNRPB	100	100.000	Propithecus_coquereli
ENSODEG00000004305	-	98	98.678	ENSPVAG00000017013	SNRPB	80	98.678	Pteropus_vampyrus
ENSODEG00000004305	-	78	92.818	ENSPNYG00000014788	snrpb	69	94.643	Pundamilia_nyererei
ENSODEG00000004305	-	92	89.545	ENSPNAG00000016126	snrpb	92	89.091	Pygocentrus_nattereri
ENSODEG00000004305	-	100	100.000	ENSRNOG00000006961	Snrpb	100	100.000	Rattus_norvegicus
ENSODEG00000004305	-	100	99.567	ENSRBIG00000040505	SNRPB	100	99.567	Rhinopithecus_bieti
ENSODEG00000004305	-	100	100.000	ENSRROG00000036094	SNRPB	100	100.000	Rhinopithecus_roxellana
ENSODEG00000004305	-	100	100.000	ENSSBOG00000027310	SNRPB	100	100.000	Saimiri_boliviensis_boliviensis
ENSODEG00000004305	-	99	98.253	ENSSHAG00000010394	SNRPB	99	94.561	Sarcophilus_harrisii
ENSODEG00000004305	-	73	92.262	ENSSFOG00015002870	snrpb	70	93.452	Scleropages_formosus
ENSODEG00000004305	-	79	91.803	ENSSMAG00000006766	snrpb	70	94.048	Scophthalmus_maximus
ENSODEG00000004305	-	78	92.818	ENSSDUG00000018539	snrpb	69	94.643	Seriola_dumerili
ENSODEG00000004305	-	78	92.818	ENSSLDG00000022391	snrpb	69	94.643	Seriola_lalandi_dorsalis
ENSODEG00000004305	-	74	84.884	ENSSARG00000003084	SNRPB	74	84.884	Sorex_araneus
ENSODEG00000004305	-	99	96.491	ENSSPUG00000015659	SNRPB	100	93.305	Sphenodon_punctatus
ENSODEG00000004305	-	78	92.818	ENSSPAG00000021992	snrpb	69	94.643	Stegastes_partitus
ENSODEG00000004305	-	100	99.567	ENSSSCG00000040857	-	100	99.567	Sus_scrofa
ENSODEG00000004305	-	100	80.087	ENSSSCG00000011966	-	90	79.703	Sus_scrofa
ENSODEG00000004305	-	77	79.661	ENSTGUG00000005684	SNRPB	59	96.429	Taeniopygia_guttata
ENSODEG00000004305	-	79	91.803	ENSTRUG00000023094	snrpb	72	94.048	Takifugu_rubripes
ENSODEG00000004305	-	79	91.803	ENSTNIG00000002991	snrpb	70	94.048	Tetraodon_nigroviridis
ENSODEG00000004305	-	75	100.000	ENSUAMG00000005984	-	83	100.000	Ursus_americanus
ENSODEG00000004305	-	59	99.270	ENSUMAG00000002123	-	64	97.842	Ursus_maritimus
ENSODEG00000004305	-	99	99.563	ENSVVUG00000025654	-	99	95.816	Vulpes_vulpes
ENSODEG00000004305	-	64	43.713	ENSVVUG00000018297	-	52	43.713	Vulpes_vulpes
ENSODEG00000004305	-	97	79.736	ENSVVUG00000010086	-	85	81.122	Vulpes_vulpes
ENSODEG00000004305	-	92	91.818	ENSXETG00000027266	snrpb	93	91.818	Xenopus_tropicalis
ENSODEG00000004305	-	93	61.435	ENSXMAG00000028767	snrpb	58	95.556	Xiphophorus_maculatus