EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000004316 (Gene tree)
Gene ID: 101572456
Gene Symbol: GFM1
Alias: -
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 51466 bases
Position: chrJH651630.1:5168097-5219562
Accession: 101572456
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000005732	GTP_EFTU	PF00009.27	2.2e-63	1	1
ENSODEP00000005732	GTP_EFTU_D2	PF03144.25	5.4e-18	1	1
ENSODEP00000005732	EFG_IV	PF03764.18	1.8e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000005831	GFM1-201	2356	XM_004639843	ENSODEP00000005732	754 (aa)	XP_004639900	UPI0003336798

Gene Model

Click here to download ENSODEG00000004316's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000004316's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000004316	GFM1	60	31.250	ENSODEG00000018041	-	52	31.250
ENSODEG00000004316	GFM1	56	32.212	ENSODEG00000000238	GUF1	62	32.212
ENSODEG00000004316	GFM1	51	35.354	ENSODEG00000003412	-	57	35.354
ENSODEG00000004316	GFM1	92	35.479	ENSODEG00000002193	GFM2	97	35.188

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000004316	GFM1	98	93.071	ENSG00000168827	GFM1	100	100.000	Homo_sapiens
ENSODEG00000004316	GFM1	93	77.273	ENSAPOG00000016489	gfm1	96	79.821	Acanthochromis_polyacanthus
ENSODEG00000004316	GFM1	98	92.152	ENSAMEG00000013542	GFM1	98	92.152	Ailuropoda_melanoleuca
ENSODEG00000004316	GFM1	96	76.033	ENSACIG00000014465	gfm1	94	76.033	Amphilophus_citrinellus
ENSODEG00000004316	GFM1	99	78.104	ENSAOCG00000006023	gfm1	97	79.424	Amphiprion_ocellaris
ENSODEG00000004316	GFM1	99	78.104	ENSAPEG00000024499	gfm1	99	80.056	Amphiprion_percula
ENSODEG00000004316	GFM1	100	78.515	ENSATEG00000013789	gfm1	98	79.700	Anabas_testudineus
ENSODEG00000004316	GFM1	96	83.196	ENSAPLG00000005022	GFM1	100	83.196	Anas_platyrhynchos
ENSODEG00000004316	GFM1	97	82.409	ENSACAG00000006829	GFM1	99	82.409	Anolis_carolinensis
ENSODEG00000004316	GFM1	100	90.716	ENSANAG00000035983	GFM1	98	91.962	Aotus_nancymaae
ENSODEG00000004316	GFM1	100	78.912	ENSACLG00000016586	gfm1	99	80.137	Astatotilapia_calliptera
ENSODEG00000004316	GFM1	100	79.365	ENSAMXG00000013435	gfm1	96	82.476	Astyanax_mexicanus
ENSODEG00000004316	GFM1	100	92.308	ENSBTAG00000027795	GFM1	98	92.828	Bos_taurus
ENSODEG00000004316	GFM1	97	55.495	WBGene00009246	gfm-1	99	55.348	Caenorhabditis_elegans
ENSODEG00000004316	GFM1	100	91.247	ENSCJAG00000000363	GFM1	98	92.005	Callithrix_jacchus
ENSODEG00000004316	GFM1	97	92.371	ENSCAFG00000009006	GFM1	100	93.491	Canis_familiaris
ENSODEG00000004316	GFM1	98	92.152	ENSCAFG00020005878	GFM1	99	91.734	Canis_lupus_dingo
ENSODEG00000004316	GFM1	100	92.706	ENSCHIG00000015220	GFM1	98	93.234	Capra_hircus
ENSODEG00000004316	GFM1	100	92.971	ENSTSYG00000002013	GFM1	98	93.378	Carlito_syrichta
ENSODEG00000004316	GFM1	96	83.929	ENSCAPG00000005699	GFM1	98	83.906	Cavia_aperea
ENSODEG00000004316	GFM1	100	95.756	ENSCPOG00000001194	GFM1	98	95.946	Cavia_porcellus
ENSODEG00000004316	GFM1	100	91.379	ENSCCAG00000025561	GFM1	98	92.381	Cebus_capucinus
ENSODEG00000004316	GFM1	100	91.910	ENSCATG00000037622	GFM1	98	92.799	Cercocebus_atys
ENSODEG00000004316	GFM1	98	95.277	ENSCLAG00000002503	GFM1	98	95.277	Chinchilla_lanigera
ENSODEG00000004316	GFM1	100	92.175	ENSCSAG00000012162	GFM1	98	93.207	Chlorocebus_sabaeus
ENSODEG00000004316	GFM1	100	83.422	ENSCHOG00000004867	GFM1	98	83.875	Choloepus_hoffmanni
ENSODEG00000004316	GFM1	99	84.203	ENSCPBG00000018367	GFM1	98	84.574	Chrysemys_picta_bellii
ENSODEG00000004316	GFM1	94	59.972	ENSCING00000011960	-	93	59.972	Ciona_intestinalis
ENSODEG00000004316	GFM1	95	60.472	ENSCSAVG00000008514	-	99	60.472	Ciona_savignyi
ENSODEG00000004316	GFM1	98	93.071	ENSCANG00000031714	GFM1	98	93.071	Colobus_angolensis_palliatus
ENSODEG00000004316	GFM1	100	91.645	ENSCGRG00001022095	GFM1	98	92.693	Cricetulus_griseus_chok1gshd
ENSODEG00000004316	GFM1	100	91.645	ENSCGRG00000012043	GFM1	98	92.693	Cricetulus_griseus_crigri
ENSODEG00000004316	GFM1	95	76.495	ENSCSEG00000017088	gfm1	98	76.495	Cynoglossus_semilaevis
ENSODEG00000004316	GFM1	99	80.774	ENSCVAG00000004126	gfm1	99	81.716	Cyprinodon_variegatus
ENSODEG00000004316	GFM1	100	77.056	ENSDARG00000063624	gfm1	96	79.555	Danio_rerio
ENSODEG00000004316	GFM1	54	88.264	ENSDNOG00000016385	-	100	88.264	Dasypus_novemcinctus
ENSODEG00000004316	GFM1	100	89.390	ENSDORG00000014165	Gfm1	98	89.986	Dipodomys_ordii
ENSODEG00000004316	GFM1	94	67.606	FBgn0263133	mEFG1	95	67.606	Drosophila_melanogaster
ENSODEG00000004316	GFM1	98	81.646	ENSETEG00000019197	GFM1	98	81.671	Echinops_telfairi
ENSODEG00000004316	GFM1	90	66.222	ENSEBUG00000012794	gfm1	99	66.222	Eptatretus_burgeri
ENSODEG00000004316	GFM1	96	68.000	ENSEEUG00000000429	GFM1	99	68.000	Erinaceus_europaeus
ENSODEG00000004316	GFM1	100	77.056	ENSELUG00000014728	gfm1	98	78.019	Esox_lucius
ENSODEG00000004316	GFM1	98	92.558	ENSFCAG00000013291	GFM1	98	92.558	Felis_catus
ENSODEG00000004316	GFM1	90	84.024	ENSFALG00000007619	GFM1	100	84.024	Ficedula_albicollis
ENSODEG00000004316	GFM1	100	94.430	ENSFDAG00000016559	GFM1	98	94.730	Fukomys_damarensis
ENSODEG00000004316	GFM1	100	79.178	ENSFHEG00000006091	gfm1	98	80.518	Fundulus_heteroclitus
ENSODEG00000004316	GFM1	95	79.640	ENSGMOG00000010161	gfm1	99	79.640	Gadus_morhua
ENSODEG00000004316	GFM1	96	82.669	ENSGALG00000009634	GFM1	98	82.669	Gallus_gallus
ENSODEG00000004316	GFM1	97	81.199	ENSGAFG00000012527	gfm1	98	81.199	Gambusia_affinis
ENSODEG00000004316	GFM1	99	77.955	ENSGACG00000009864	gfm1	97	79.724	Gasterosteus_aculeatus
ENSODEG00000004316	GFM1	98	93.342	ENSGGOG00000003085	GFM1	98	93.342	Gorilla_gorilla
ENSODEG00000004316	GFM1	100	79.045	ENSHBUG00000002120	gfm1	97	81.267	Haplochromis_burtoni
ENSODEG00000004316	GFM1	100	94.430	ENSHGLG00000016855	GFM1	98	94.595	Heterocephalus_glaber_female
ENSODEG00000004316	GFM1	100	94.430	ENSHGLG00100013049	GFM1	98	94.595	Heterocephalus_glaber_male
ENSODEG00000004316	GFM1	95	81.373	ENSHCOG00000007638	gfm1	99	80.249	Hippocampus_comes
ENSODEG00000004316	GFM1	96	80.579	ENSIPUG00000005873	gfm1	97	80.579	Ictalurus_punctatus
ENSODEG00000004316	GFM1	98	91.328	ENSSTOG00000010150	GFM1	99	91.328	Ictidomys_tridecemlineatus
ENSODEG00000004316	GFM1	100	91.114	ENSJJAG00000016447	Gfm1	98	91.757	Jaculus_jaculus
ENSODEG00000004316	GFM1	100	77.188	ENSKMAG00000020768	gfm1	98	78.610	Kryptolebias_marmoratus
ENSODEG00000004316	GFM1	93	80.912	ENSLBEG00000021315	gfm1	100	80.912	Labrus_bergylta
ENSODEG00000004316	GFM1	96	81.370	ENSLACG00000012295	GFM1	99	81.370	Latimeria_chalumnae
ENSODEG00000004316	GFM1	96	75.583	ENSLOCG00000003778	gfm1	99	75.583	Lepisosteus_oculatus
ENSODEG00000004316	GFM1	97	89.417	ENSLAFG00000010945	GFM1	100	88.828	Loxodonta_africana
ENSODEG00000004316	GFM1	100	92.175	ENSMFAG00000035731	GFM1	98	93.207	Macaca_fascicularis
ENSODEG00000004316	GFM1	100	92.308	ENSMMUG00000004961	GFM1	98	93.342	Macaca_mulatta
ENSODEG00000004316	GFM1	100	92.308	ENSMNEG00000033245	GFM1	98	93.207	Macaca_nemestrina
ENSODEG00000004316	GFM1	96	91.448	ENSMLEG00000030908	GFM1	100	91.117	Mandrillus_leucophaeus
ENSODEG00000004316	GFM1	100	78.780	ENSMAMG00000011760	gfm1	98	79.973	Mastacembelus_armatus
ENSODEG00000004316	GFM1	100	79.045	ENSMZEG00005016639	gfm1	97	81.267	Maylandia_zebra
ENSODEG00000004316	GFM1	95	83.310	ENSMGAG00000010641	GFM1	96	83.310	Meleagris_gallopavo
ENSODEG00000004316	GFM1	99	92.895	ENSMAUG00000000611	Gfm1	98	93.234	Mesocricetus_auratus
ENSODEG00000004316	GFM1	98	93.478	ENSMICG00000049086	GFM1	100	93.103	Microcebus_murinus
ENSODEG00000004316	GFM1	100	91.777	ENSMOCG00000000465	Gfm1	98	92.693	Microtus_ochrogaster
ENSODEG00000004316	GFM1	95	80.807	ENSMMOG00000012538	gfm1	97	80.807	Mola_mola
ENSODEG00000004316	GFM1	98	85.849	ENSMODG00000015673	GFM1	99	85.849	Monodelphis_domestica
ENSODEG00000004316	GFM1	98	79.076	ENSMALG00000012508	gfm1	98	79.076	Monopterus_albus
ENSODEG00000004316	GFM1	100	90.716	MGP_CAROLIEiJ_G0025052	Gfm1	98	91.571	Mus_caroli
ENSODEG00000004316	GFM1	100	90.981	ENSMUSG00000027774	Gfm1	98	91.746	Mus_musculus
ENSODEG00000004316	GFM1	100	91.114	MGP_PahariEiJ_G0026495	Gfm1	98	91.954	Mus_pahari
ENSODEG00000004316	GFM1	100	90.981	MGP_SPRETEiJ_G0025994	Gfm1	98	91.762	Mus_spretus
ENSODEG00000004316	GFM1	100	91.910	ENSMPUG00000002859	GFM1	98	92.422	Mustela_putorius_furo
ENSODEG00000004316	GFM1	100	92.175	ENSMLUG00000000452	GFM1	98	92.828	Myotis_lucifugus
ENSODEG00000004316	GFM1	100	90.981	ENSNGAG00000012375	Gfm1	98	92.245	Nannospalax_galili
ENSODEG00000004316	GFM1	96	81.241	ENSNBRG00000004631	gfm1	99	81.241	Neolamprologus_brichardi
ENSODEG00000004316	GFM1	98	93.478	ENSNLEG00000004176	GFM1	98	93.478	Nomascus_leucogenys
ENSODEG00000004316	GFM1	91	77.956	ENSMEUG00000007784	GFM1	100	77.956	Notamacropus_eugenii
ENSODEG00000004316	GFM1	100	88.196	ENSOPRG00000009860	GFM1	98	90.261	Ochotona_princeps
ENSODEG00000004316	GFM1	100	79.310	ENSONIG00000003772	gfm1	97	81.405	Oreochromis_niloticus
ENSODEG00000004316	GFM1	98	93.505	ENSOCUG00000013561	GFM1	98	93.505	Oryctolagus_cuniculus
ENSODEG00000004316	GFM1	94	82.228	ENSORLG00000006487	gfm1	100	82.228	Oryzias_latipes
ENSODEG00000004316	GFM1	96	81.129	ENSORLG00020003362	gfm1	97	81.129	Oryzias_latipes_hni
ENSODEG00000004316	GFM1	96	80.716	ENSORLG00015005829	gfm1	97	80.716	Oryzias_latipes_hsok
ENSODEG00000004316	GFM1	96	81.129	ENSOMEG00000012894	gfm1	97	81.129	Oryzias_melastigma
ENSODEG00000004316	GFM1	100	91.512	ENSOGAG00000008298	GFM1	98	92.152	Otolemur_garnettii
ENSODEG00000004316	GFM1	96	92.857	ENSOARG00000002409	GFM1	100	92.857	Ovis_aries
ENSODEG00000004316	GFM1	98	93.342	ENSPPAG00000033881	GFM1	98	93.342	Pan_paniscus
ENSODEG00000004316	GFM1	98	92.422	ENSPPRG00000009281	GFM1	98	92.422	Panthera_pardus
ENSODEG00000004316	GFM1	98	92.287	ENSPTIG00000012416	GFM1	98	92.287	Panthera_tigris_altaica
ENSODEG00000004316	GFM1	98	93.342	ENSPTRG00000015570	GFM1	98	93.342	Pan_troglodytes
ENSODEG00000004316	GFM1	100	92.440	ENSPANG00000016512	GFM1	98	93.342	Papio_anubis
ENSODEG00000004316	GFM1	95	81.755	ENSPKIG00000004876	gfm1	96	81.755	Paramormyrops_kingsleyae
ENSODEG00000004316	GFM1	99	83.534	ENSPSIG00000012567	GFM1	98	83.762	Pelodiscus_sinensis
ENSODEG00000004316	GFM1	95	79.612	ENSPMGG00000014068	gfm1	99	79.612	Periophthalmus_magnuspinnatus
ENSODEG00000004316	GFM1	100	91.777	ENSPEMG00000008942	Gfm1	98	92.693	Peromyscus_maniculatus_bairdii
ENSODEG00000004316	GFM1	84	85.647	ENSPCIG00000020195	GFM1	98	86.212	Phascolarctos_cinereus
ENSODEG00000004316	GFM1	100	80.239	ENSPFOG00000011022	gfm1	99	81.351	Poecilia_formosa
ENSODEG00000004316	GFM1	96	82.483	ENSPLAG00000019585	gfm1	96	82.483	Poecilia_latipinna
ENSODEG00000004316	GFM1	100	80.106	ENSPMEG00000012376	gfm1	99	81.216	Poecilia_mexicana
ENSODEG00000004316	GFM1	100	79.841	ENSPREG00000001332	gfm1	93	81.471	Poecilia_reticulata
ENSODEG00000004316	GFM1	98	93.342	ENSPPYG00000014244	GFM1	98	93.342	Pongo_abelii
ENSODEG00000004316	GFM1	93	87.909	ENSPCAG00000008934	GFM1	100	87.909	Procavia_capensis
ENSODEG00000004316	GFM1	98	94.293	ENSPCOG00000022259	GFM1	98	94.189	Propithecus_coquereli
ENSODEG00000004316	GFM1	100	91.777	ENSPVAG00000013605	GFM1	98	92.016	Pteropus_vampyrus
ENSODEG00000004316	GFM1	100	78.780	ENSPNYG00000006037	gfm1	99	80.381	Pundamilia_nyererei
ENSODEG00000004316	GFM1	100	78.836	ENSPNAG00000001237	gfm1	97	81.641	Pygocentrus_nattereri
ENSODEG00000004316	GFM1	100	90.981	ENSRNOG00000012873	Gfm1	98	92.152	Rattus_norvegicus
ENSODEG00000004316	GFM1	98	92.935	ENSRBIG00000031363	GFM1	98	92.935	Rhinopithecus_bieti
ENSODEG00000004316	GFM1	98	93.071	ENSRROG00000031081	GFM1	98	93.071	Rhinopithecus_roxellana
ENSODEG00000004316	GFM1	92	56.835	YLR069C	-	90	56.835	Saccharomyces_cerevisiae
ENSODEG00000004316	GFM1	100	91.910	ENSSBOG00000023252	GFM1	98	92.799	Saimiri_boliviensis_boliviensis
ENSODEG00000004316	GFM1	98	87.228	ENSSHAG00000017772	GFM1	98	87.228	Sarcophilus_harrisii
ENSODEG00000004316	GFM1	96	80.082	ENSSFOG00015003117	gfm1	99	80.082	Scleropages_formosus
ENSODEG00000004316	GFM1	100	77.454	ENSSMAG00000013221	gfm1	98	78.474	Scophthalmus_maximus
ENSODEG00000004316	GFM1	100	77.984	ENSSDUG00000018665	gfm1	98	79.428	Seriola_dumerili
ENSODEG00000004316	GFM1	100	77.984	ENSSLDG00000020606	gfm1	98	79.428	Seriola_lalandi_dorsalis
ENSODEG00000004316	GFM1	97	81.181	ENSSPUG00000018686	GFM1	98	81.181	Sphenodon_punctatus
ENSODEG00000004316	GFM1	100	78.249	ENSSPAG00000008800	gfm1	98	79.564	Stegastes_partitus
ENSODEG00000004316	GFM1	100	91.258	ENSSSCG00000025651	GFM1	98	91.881	Sus_scrofa
ENSODEG00000004316	GFM1	100	77.984	ENSTRUG00000009244	gfm1	97	79.890	Takifugu_rubripes
ENSODEG00000004316	GFM1	95	81.919	ENSTNIG00000007729	gfm1	97	81.267	Tetraodon_nigroviridis
ENSODEG00000004316	GFM1	89	82.815	ENSTBEG00000017404	GFM1	89	82.815	Tupaia_belangeri
ENSODEG00000004316	GFM1	100	90.897	ENSTTRG00000001735	GFM1	98	92.027	Tursiops_truncatus
ENSODEG00000004316	GFM1	98	92.963	ENSUAMG00000026381	GFM1	98	92.963	Ursus_americanus
ENSODEG00000004316	GFM1	98	92.828	ENSUMAG00000011268	GFM1	98	92.828	Ursus_maritimus
ENSODEG00000004316	GFM1	100	88.727	ENSVPAG00000009444	GFM1	98	89.175	Vicugna_pacos
ENSODEG00000004316	GFM1	99	90.305	ENSVVUG00000020091	GFM1	100	93.047	Vulpes_vulpes
ENSODEG00000004316	GFM1	100	82.384	ENSXETG00000032551	GFM1	96	85.139	Xenopus_tropicalis
ENSODEG00000004316	GFM1	52	80.102	ENSXCOG00000012590	gfm1	90	80.102	Xiphophorus_couchianus
ENSODEG00000004316	GFM1	100	79.443	ENSXMAG00000000261	gfm1	98	81.063	Xiphophorus_maculatus