EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000004418 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specificity factor subunit 6-like
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 22189 bases
Position: chrJH651562.1:6046777-6068965
Accession: 101566280
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000005868	RRM_1	PF00076.22	5.4e-07	1	1
ENSODEP00000005867	RRM_1	PF00076.22	6.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000005965	-	1740	-	ENSODEP00000005866	209 (aa)	-	-
ENSODET00000005966	-	1419	XM_012514954	ENSODEP00000005867	472 (aa)	-	-
ENSODET00000005967	-	1284	-	ENSODEP00000005868	427 (aa)	-	-

Gene Model

Click here to download ENSODEG00000004418's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000004418's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000004418	-	74	82.443	ENSODEG00000007109	-	92	54.286
ENSODEG00000004418	-	79	99.438	ENSODEG00000018399	-	71	98.985

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000004418	-	93	42.729	ENSG00000149532	CPSF7	91	58.857	Homo_sapiens
ENSODEG00000004418	-	90	98.800	ENSG00000111605	CPSF6	75	99.197	Homo_sapiens
ENSODEG00000004418	-	90	98.400	ENSAMEG00000011781	CPSF6	75	98.795	Ailuropoda_melanoleuca
ENSODEG00000004418	-	79	51.269	ENSAMEG00000016595	CPSF7	63	58.721	Ailuropoda_melanoleuca
ENSODEG00000004418	-	86	89.888	ENSACIG00000018413	cpsf6	68	87.629	Amphilophus_citrinellus
ENSODEG00000004418	-	90	98.800	ENSANAG00000019240	CPSF6	77	99.197	Aotus_nancymaae
ENSODEG00000004418	-	78	90.361	ENSACLG00000026325	cpsf6	62	89.157	Astatotilapia_calliptera
ENSODEG00000004418	-	87	89.820	ENSAMXG00000016745	CPSF6	70	89.697	Astyanax_mexicanus
ENSODEG00000004418	-	90	99.200	ENSBTAG00000007323	CPSF6	75	99.598	Bos_taurus
ENSODEG00000004418	-	93	42.729	ENSCJAG00000019282	CPSF7	79	59.091	Callithrix_jacchus
ENSODEG00000004418	-	90	99.435	ENSCJAG00000001798	CPSF6	75	99.197	Callithrix_jacchus
ENSODEG00000004418	-	90	98.800	ENSCAFG00000000424	CPSF6	78	99.197	Canis_familiaris
ENSODEG00000004418	-	90	98.800	ENSCAFG00020016950	CPSF6	75	99.197	Canis_lupus_dingo
ENSODEG00000004418	-	90	99.200	ENSCHIG00000010792	CPSF6	75	99.598	Capra_hircus
ENSODEG00000004418	-	90	99.435	ENSTSYG00000008591	CPSF6	77	98.446	Carlito_syrichta
ENSODEG00000004418	-	90	99.200	ENSCPOG00000015201	CPSF6	75	99.598	Cavia_porcellus
ENSODEG00000004418	-	90	99.435	ENSCCAG00000028149	CPSF6	75	99.197	Cebus_capucinus
ENSODEG00000004418	-	90	98.800	ENSCATG00000039288	CPSF6	75	99.197	Cercocebus_atys
ENSODEG00000004418	-	90	99.197	ENSCLAG00000010149	CPSF6	77	99.597	Chinchilla_lanigera
ENSODEG00000004418	-	90	98.800	ENSCSAG00000004232	CPSF6	75	99.197	Chlorocebus_sabaeus
ENSODEG00000004418	-	79	95.939	ENSCPBG00000013322	CPSF6	72	95.939	Chrysemys_picta_bellii
ENSODEG00000004418	-	76	82.500	ENSCSAVG00000000161	-	52	67.769	Ciona_savignyi
ENSODEG00000004418	-	90	98.795	ENSCANG00000037294	CPSF6	77	99.194	Colobus_angolensis_palliatus
ENSODEG00000004418	-	90	98.800	ENSCGRG00001018082	Cpsf6	75	99.197	Cricetulus_griseus_chok1gshd
ENSODEG00000004418	-	90	98.795	ENSCGRG00000016909	Cpsf6	77	99.194	Cricetulus_griseus_crigri
ENSODEG00000004418	-	70	35.048	ENSCSEG00000001956	CPSF7	57	47.552	Cynoglossus_semilaevis
ENSODEG00000004418	-	83	89.759	ENSCSEG00000008967	cpsf6	62	88.554	Cynoglossus_semilaevis
ENSODEG00000004418	-	83	31.059	ENSCVAG00000007392	CPSF7	52	45.745	Cyprinodon_variegatus
ENSODEG00000004418	-	80	84.337	ENSCVAG00000014857	cpsf6	89	63.758	Cyprinodon_variegatus
ENSODEG00000004418	-	79	99.492	ENSDNOG00000015292	CPSF6	71	99.492	Dasypus_novemcinctus
ENSODEG00000004418	-	93	42.105	ENSDNOG00000018517	CPSF7	79	59.659	Dasypus_novemcinctus
ENSODEG00000004418	-	90	98.795	ENSDORG00000002950	Cpsf6	77	99.194	Dipodomys_ordii
ENSODEG00000004418	-	52	79.221	FBgn0035872	CG7185	62	47.414	Drosophila_melanogaster
ENSODEG00000004418	-	88	98.394	ENSETEG00000002097	CPSF6	75	98.394	Echinops_telfairi
ENSODEG00000004418	-	90	98.800	ENSEASG00005008066	CPSF6	75	99.197	Equus_asinus_asinus
ENSODEG00000004418	-	90	98.800	ENSECAG00000015988	CPSF6	75	99.197	Equus_caballus
ENSODEG00000004418	-	93	41.289	ENSECAG00000018521	CPSF7	87	59.659	Equus_caballus
ENSODEG00000004418	-	90	97.189	ENSEEUG00000015039	CPSF6	77	97.581	Erinaceus_europaeus
ENSODEG00000004418	-	63	60.656	ENSEEUG00000005966	-	66	61.864	Erinaceus_europaeus
ENSODEG00000004418	-	90	98.400	ENSFCAG00000002855	CPSF6	75	98.795	Felis_catus
ENSODEG00000004418	-	93	42.105	ENSFCAG00000013677	CPSF7	87	59.659	Felis_catus
ENSODEG00000004418	-	79	97.740	ENSFALG00000010157	CPSF6	73	96.954	Ficedula_albicollis
ENSODEG00000004418	-	93	43.891	ENSFALG00000011927	CPSF7	72	58.721	Ficedula_albicollis
ENSODEG00000004418	-	90	98.795	ENSFDAG00000002281	CPSF6	75	99.194	Fukomys_damarensis
ENSODEG00000004418	-	77	83.333	ENSFHEG00000019693	cpsf6	83	84.021	Fundulus_heteroclitus
ENSODEG00000004418	-	64	91.736	ENSGMOG00000012951	cpsf6	50	93.388	Gadus_morhua
ENSODEG00000004418	-	79	95.939	ENSGAGG00000010228	CPSF6	73	95.122	Gopherus_agassizii
ENSODEG00000004418	-	90	99.435	ENSGGOG00000008211	CPSF6	75	99.197	Gorilla_gorilla
ENSODEG00000004418	-	78	90.698	ENSHBUG00000005998	cpsf6	70	89.017	Haplochromis_burtoni
ENSODEG00000004418	-	90	98.800	ENSHGLG00000000792	CPSF6	75	99.197	Heterocephalus_glaber_female
ENSODEG00000004418	-	90	98.795	ENSHGLG00100013861	CPSF6	77	99.194	Heterocephalus_glaber_male
ENSODEG00000004418	-	82	86.111	ENSHCOG00000014555	cpsf6	71	86.782	Hippocampus_comes
ENSODEG00000004418	-	90	98.800	ENSSTOG00000014133	CPSF6	73	100.000	Ictidomys_tridecemlineatus
ENSODEG00000004418	-	90	98.795	ENSJJAG00000014647	Cpsf6	77	99.194	Jaculus_jaculus
ENSODEG00000004418	-	78	88.024	ENSKMAG00000014794	cpsf6	91	64.286	Kryptolebias_marmoratus
ENSODEG00000004418	-	80	87.952	ENSLBEG00000015762	cpsf6	62	87.952	Labrus_bergylta
ENSODEG00000004418	-	81	94.915	ENSLACG00000008625	CPSF6	91	76.048	Latimeria_chalumnae
ENSODEG00000004418	-	81	94.706	ENSLOCG00000016190	cpsf6	63	94.706	Lepisosteus_oculatus
ENSODEG00000004418	-	79	100.000	ENSLAFG00000030413	CPSF6	95	80.042	Loxodonta_africana
ENSODEG00000004418	-	90	99.435	ENSMFAG00000045318	CPSF6	75	99.197	Macaca_fascicularis
ENSODEG00000004418	-	90	99.435	ENSMMUG00000002921	CPSF6	75	99.197	Macaca_mulatta
ENSODEG00000004418	-	90	99.435	ENSMNEG00000036311	CPSF6	75	99.197	Macaca_nemestrina
ENSODEG00000004418	-	90	98.795	ENSMLEG00000003957	CPSF6	77	99.194	Mandrillus_leucophaeus
ENSODEG00000004418	-	78	89.157	ENSMAMG00000010385	cpsf6	62	87.952	Mastacembelus_armatus
ENSODEG00000004418	-	78	90.698	ENSMZEG00005007975	cpsf6	70	89.017	Maylandia_zebra
ENSODEG00000004418	-	78	55.495	ENSMGAG00000004876	CPSF7	59	58.683	Meleagris_gallopavo
ENSODEG00000004418	-	85	94.915	ENSMGAG00000010552	CPSF6	73	96.939	Meleagris_gallopavo
ENSODEG00000004418	-	90	98.800	ENSMAUG00000013240	Cpsf6	75	99.197	Mesocricetus_auratus
ENSODEG00000004418	-	90	98.800	ENSMICG00000007385	-	75	99.197	Microcebus_murinus
ENSODEG00000004418	-	90	98.800	ENSMOCG00000013982	Cpsf6	75	99.197	Microtus_ochrogaster
ENSODEG00000004418	-	79	98.477	ENSMODG00000007123	CPSF6	71	98.477	Monodelphis_domestica
ENSODEG00000004418	-	89	89.005	ENSMALG00000014908	cpsf6	78	87.113	Monopterus_albus
ENSODEG00000004418	-	90	98.800	MGP_CAROLIEiJ_G0015834	Cpsf6	75	99.197	Mus_caroli
ENSODEG00000004418	-	90	98.000	ENSMUSG00000055531	Cpsf6	75	98.394	Mus_musculus
ENSODEG00000004418	-	88	98.795	MGP_PahariEiJ_G0031253	Cpsf6	74	98.795	Mus_pahari
ENSODEG00000004418	-	90	98.000	MGP_SPRETEiJ_G0016657	Cpsf6	75	98.394	Mus_spretus
ENSODEG00000004418	-	79	100.000	ENSMPUG00000017502	CPSF6	70	100.000	Mustela_putorius_furo
ENSODEG00000004418	-	94	77.206	ENSMLUG00000028728	-	89	75.556	Myotis_lucifugus
ENSODEG00000004418	-	79	100.000	ENSMLUG00000004172	-	70	100.000	Myotis_lucifugus
ENSODEG00000004418	-	90	98.800	ENSNGAG00000015901	Cpsf6	75	99.197	Nannospalax_galili
ENSODEG00000004418	-	90	99.435	ENSNLEG00000003798	CPSF6	75	98.795	Nomascus_leucogenys
ENSODEG00000004418	-	90	97.992	ENSMEUG00000015041	CPSF6	75	97.992	Notamacropus_eugenii
ENSODEG00000004418	-	90	98.394	ENSOPRG00000005199	CPSF6	77	98.790	Ochotona_princeps
ENSODEG00000004418	-	78	89.759	ENSONIG00000011702	cpsf6	70	90.173	Oreochromis_niloticus
ENSODEG00000004418	-	89	88.325	ENSOANG00000005944	CPSF6	63	93.182	Ornithorhynchus_anatinus
ENSODEG00000004418	-	90	98.800	ENSOCUG00000013505	CPSF6	75	99.197	Oryctolagus_cuniculus
ENSODEG00000004418	-	93	46.296	ENSOCUG00000024726	CPSF7	62	59.659	Oryctolagus_cuniculus
ENSODEG00000004418	-	73	36.530	ENSOMEG00000000539	CPSF7	71	37.037	Oryzias_melastigma
ENSODEG00000004418	-	79	98.985	ENSOGAG00000031988	CPSF6	73	98.985	Otolemur_garnettii
ENSODEG00000004418	-	79	51.795	ENSOARG00000012937	CPSF7	61	59.659	Ovis_aries
ENSODEG00000004418	-	90	99.435	ENSOARG00000020532	CPSF6	77	99.598	Ovis_aries
ENSODEG00000004418	-	86	99.435	ENSPPAG00000005301	CPSF6	81	99.197	Pan_paniscus
ENSODEG00000004418	-	94	41.915	ENSPPRG00000008538	CPSF7	68	60.227	Panthera_pardus
ENSODEG00000004418	-	90	98.400	ENSPPRG00000021620	CPSF6	75	98.795	Panthera_pardus
ENSODEG00000004418	-	83	98.157	ENSPTIG00000004079	CPSF6	76	98.611	Panthera_tigris_altaica
ENSODEG00000004418	-	90	99.435	ENSPTRG00000005205	CPSF6	75	99.197	Pan_troglodytes
ENSODEG00000004418	-	90	98.800	ENSPANG00000011641	CPSF6	75	99.197	Papio_anubis
ENSODEG00000004418	-	71	47.458	ENSPKIG00000018054	CPSF7	75	45.213	Paramormyrops_kingsleyae
ENSODEG00000004418	-	90	98.795	ENSPEMG00000007973	Cpsf6	77	99.194	Peromyscus_maniculatus_bairdii
ENSODEG00000004418	-	80	73.810	ENSPMAG00000000657	cpsf6	56	85.385	Petromyzon_marinus
ENSODEG00000004418	-	93	41.509	ENSPCIG00000002551	CPSF7	80	56.284	Phascolarctos_cinereus
ENSODEG00000004418	-	90	97.600	ENSPCIG00000019063	CPSF6	75	97.992	Phascolarctos_cinereus
ENSODEG00000004418	-	81	84.337	ENSPLAG00000005715	cpsf6	90	66.309	Poecilia_latipinna
ENSODEG00000004418	-	81	84.337	ENSPMEG00000001353	cpsf6	71	83.505	Poecilia_mexicana
ENSODEG00000004418	-	81	84.337	ENSPREG00000004417	cpsf6	71	80.808	Poecilia_reticulata
ENSODEG00000004418	-	79	100.000	ENSPPYG00000004756	CPSF6	71	100.000	Pongo_abelii
ENSODEG00000004418	-	90	98.800	ENSPCAG00000011574	CPSF6	75	99.197	Procavia_capensis
ENSODEG00000004418	-	90	98.870	ENSPCOG00000024384	CPSF6	75	99.197	Propithecus_coquereli
ENSODEG00000004418	-	88	98.400	ENSPVAG00000015753	CPSF6	75	98.795	Pteropus_vampyrus
ENSODEG00000004418	-	78	90.361	ENSPNYG00000020315	cpsf6	62	89.157	Pundamilia_nyererei
ENSODEG00000004418	-	79	99.492	ENSRNOG00000005927	Cpsf6	71	99.492	Rattus_norvegicus
ENSODEG00000004418	-	93	42.729	ENSRBIG00000031429	CPSF7	87	59.091	Rhinopithecus_bieti
ENSODEG00000004418	-	90	98.870	ENSRBIG00000042827	CPSF6	75	99.197	Rhinopithecus_bieti
ENSODEG00000004418	-	90	98.800	ENSRROG00000042758	CPSF6	75	99.197	Rhinopithecus_roxellana
ENSODEG00000004418	-	90	99.435	ENSSBOG00000010652	CPSF6	77	99.197	Saimiri_boliviensis_boliviensis
ENSODEG00000004418	-	79	97.475	ENSSHAG00000006635	CPSF6	73	97.475	Sarcophilus_harrisii
ENSODEG00000004418	-	97	37.336	ENSSFOG00015010288	cpsf7	90	35.269	Scleropages_formosus
ENSODEG00000004418	-	77	87.952	ENSSMAG00000000471	cpsf6	62	88.554	Scophthalmus_maximus
ENSODEG00000004418	-	78	89.157	ENSSDUG00000005024	cpsf6	62	87.952	Seriola_dumerili
ENSODEG00000004418	-	78	89.157	ENSSLDG00000009042	cpsf6	62	87.952	Seriola_lalandi_dorsalis
ENSODEG00000004418	-	85	96.610	ENSSARG00000006743	CPSF6	65	96.791	Sorex_araneus
ENSODEG00000004418	-	77	96.954	ENSSPUG00000001238	CPSF6	72	96.954	Sphenodon_punctatus
ENSODEG00000004418	-	81	89.326	ENSSPAG00000013906	cpsf6	91	63.301	Stegastes_partitus
ENSODEG00000004418	-	93	42.105	ENSSSCG00000013083	CPSF7	79	59.659	Sus_scrofa
ENSODEG00000004418	-	90	98.800	ENSSSCG00000038031	CPSF6	76	99.074	Sus_scrofa
ENSODEG00000004418	-	79	72.678	ENSTRUG00000016461	cpsf6	94	71.495	Takifugu_rubripes
ENSODEG00000004418	-	81	88.953	ENSTNIG00000007576	cpsf6	94	70.093	Tetraodon_nigroviridis
ENSODEG00000004418	-	72	100.000	ENSUAMG00000023492	CPSF6	71	100.000	Ursus_americanus
ENSODEG00000004418	-	93	94.541	ENSUMAG00000020779	CPSF6	100	94.541	Ursus_maritimus
ENSODEG00000004418	-	90	98.795	ENSVPAG00000008469	CPSF6	77	99.194	Vicugna_pacos
ENSODEG00000004418	-	94	41.915	ENSVVUG00000004939	CPSF7	79	59.659	Vulpes_vulpes
ENSODEG00000004418	-	83	98.618	ENSVVUG00000010156	-	76	99.074	Vulpes_vulpes
ENSODEG00000004418	-	96	39.189	ENSXETG00000006715	cpsf7	62	54.118	Xenopus_tropicalis
ENSODEG00000004418	-	81	84.337	ENSXMAG00000003459	cpsf6	67	82.990	Xiphophorus_maculatus