EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000004519 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 422 bases
Position: chrJH651549.1:4237753-4238174
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000006014	LSM	PF01423.22	1.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000006113	-	405	-	ENSODEP00000006014	134 (aa)	-	-

Gene Model

Click here to download ENSODEG00000004519's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000004519's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000004519	-	54	30.556	ENSODEG00000020162	-	57	30.556
ENSODEG00000004519	-	70	30.928	ENSODEG00000017583	LSM2	86	32.143
ENSODEG00000004519	-	54	30.556	ENSODEG00000019354	-	56	30.556
ENSODEG00000004519	-	100	82.734	ENSODEG00000020549	-	100	89.928
ENSODEG00000004519	-	100	63.971	ENSODEG00000011712	-	100	71.324
ENSODEG00000004519	-	54	30.556	ENSODEG00000008064	-	56	30.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000004519	-	100	74.820	ENSG00000130520	LSM4	100	87.050	Homo_sapiens
ENSODEG00000004519	-	72	86.869	ENSAPOG00000005643	lsm4	58	88.636	Acanthochromis_polyacanthus
ENSODEG00000004519	-	99	74.638	ENSAMEG00000011162	LSM4	95	86.957	Ailuropoda_melanoleuca
ENSODEG00000004519	-	99	68.531	ENSAOCG00000006414	lsm4	59	88.636	Amphiprion_ocellaris
ENSODEG00000004519	-	99	68.056	ENSAPEG00000006238	lsm4	59	88.636	Amphiprion_percula
ENSODEG00000004519	-	72	86.869	ENSATEG00000016559	lsm4	58	88.636	Anabas_testudineus
ENSODEG00000004519	-	100	74.820	ENSANAG00000034659	LSM4	100	87.050	Aotus_nancymaae
ENSODEG00000004519	-	80	75.000	ENSACLG00000022738	lsm4	60	88.636	Astatotilapia_calliptera
ENSODEG00000004519	-	99	71.014	ENSAMXG00000016932	lsm4	62	87.500	Astyanax_mexicanus
ENSODEG00000004519	-	100	74.820	ENSBTAG00000008578	LSM4	100	87.050	Bos_taurus
ENSODEG00000004519	-	58	70.513	WBGene00003078	lsm-4	63	70.513	Caenorhabditis_elegans
ENSODEG00000004519	-	100	74.820	ENSCJAG00000014171	LSM4	100	87.050	Callithrix_jacchus
ENSODEG00000004519	-	99	74.638	ENSCAFG00000014900	LSM4	90	86.957	Canis_familiaris
ENSODEG00000004519	-	100	74.820	ENSCAFG00020012137	LSM4	100	87.050	Canis_lupus_dingo
ENSODEG00000004519	-	99	74.638	ENSCHIG00000010928	LSM4	91	86.957	Capra_hircus
ENSODEG00000004519	-	100	74.101	ENSTSYG00000030906	LSM4	100	86.331	Carlito_syrichta
ENSODEG00000004519	-	100	73.381	ENSCAPG00000014140	LSM4	100	86.331	Cavia_aperea
ENSODEG00000004519	-	100	73.381	ENSCPOG00000024117	LSM4	100	86.331	Cavia_porcellus
ENSODEG00000004519	-	100	74.820	ENSCCAG00000036308	LSM4	100	87.050	Cebus_capucinus
ENSODEG00000004519	-	100	74.820	ENSCATG00000029311	LSM4	100	87.050	Cercocebus_atys
ENSODEG00000004519	-	100	82.734	ENSCLAG00000010828	LSM4	100	89.209	Chinchilla_lanigera
ENSODEG00000004519	-	100	74.820	ENSCSAG00000005370	LSM4	100	87.050	Chlorocebus_sabaeus
ENSODEG00000004519	-	100	71.942	ENSCPBG00000012925	LSM4	100	81.884	Chrysemys_picta_bellii
ENSODEG00000004519	-	58	88.462	ENSCING00000007519	-	69	81.818	Ciona_intestinalis
ENSODEG00000004519	-	58	88.462	ENSCSAVG00000008596	-	70	82.955	Ciona_savignyi
ENSODEG00000004519	-	100	74.820	ENSCANG00000043686	LSM4	100	87.050	Colobus_angolensis_palliatus
ENSODEG00000004519	-	100	73.188	ENSCGRG00001014436	Lsm4	100	83.333	Cricetulus_griseus_chok1gshd
ENSODEG00000004519	-	99	72.993	ENSCGRG00000009398	Lsm4	100	83.212	Cricetulus_griseus_crigri
ENSODEG00000004519	-	70	85.567	ENSCSEG00000016127	lsm4	62	87.500	Cynoglossus_semilaevis
ENSODEG00000004519	-	87	66.667	ENSCVAG00000021828	lsm4	56	86.301	Cyprinodon_variegatus
ENSODEG00000004519	-	99	69.565	ENSCVAG00000010601	lsm4	62	87.500	Cyprinodon_variegatus
ENSODEG00000004519	-	72	85.859	ENSDARG00000023852	lsm4	62	88.636	Danio_rerio
ENSODEG00000004519	-	100	81.295	ENSDORG00000024225	Lsm4	100	87.770	Dipodomys_ordii
ENSODEG00000004519	-	70	72.165	FBgn0032240	CG17768	57	79.545	Drosophila_melanogaster
ENSODEG00000004519	-	89	71.774	ENSETEG00000007762	-	100	85.484	Echinops_telfairi
ENSODEG00000004519	-	56	85.333	ENSEBUG00000003639	-	50	85.333	Eptatretus_burgeri
ENSODEG00000004519	-	100	74.820	ENSECAG00000010141	LSM4	57	87.050	Equus_caballus
ENSODEG00000004519	-	95	73.134	ENSELUG00000012821	lsm4	66	88.506	Esox_lucius
ENSODEG00000004519	-	100	74.820	ENSFCAG00000040580	LSM4	100	87.050	Felis_catus
ENSODEG00000004519	-	99	71.014	ENSFALG00000009478	LSM4	99	81.752	Ficedula_albicollis
ENSODEG00000004519	-	99	74.638	ENSFDAG00000010124	LSM4	100	89.855	Fukomys_damarensis
ENSODEG00000004519	-	69	86.458	ENSGMOG00000007729	lsm4	95	70.213	Gadus_morhua
ENSODEG00000004519	-	100	71.223	ENSGALG00000003385	LSM4	100	81.884	Gallus_gallus
ENSODEG00000004519	-	80	74.194	ENSGAFG00000004903	lsm4	55	83.562	Gambusia_affinis
ENSODEG00000004519	-	69	87.368	ENSGACG00000008140	lsm4	59	88.636	Gasterosteus_aculeatus
ENSODEG00000004519	-	100	71.942	ENSGAGG00000017812	LSM4	100	81.884	Gopherus_agassizii
ENSODEG00000004519	-	100	74.820	ENSGGOG00000012914	-	100	87.050	Gorilla_gorilla
ENSODEG00000004519	-	100	87.050	ENSHGLG00000006568	LSM4	100	87.050	Heterocephalus_glaber_female
ENSODEG00000004519	-	67	89.247	ENSHGLG00100007894	LSM4	95	89.773	Heterocephalus_glaber_male
ENSODEG00000004519	-	72	86.869	ENSHCOG00000008819	lsm4	62	88.636	Hippocampus_comes
ENSODEG00000004519	-	72	86.869	ENSIPUG00000005368	Lsm4	62	88.636	Ictalurus_punctatus
ENSODEG00000004519	-	100	74.820	ENSSTOG00000016494	LSM4	100	87.050	Ictidomys_tridecemlineatus
ENSODEG00000004519	-	100	74.101	ENSJJAG00000017420	Lsm4	100	85.612	Jaculus_jaculus
ENSODEG00000004519	-	62	88.372	ENSKMAG00000005073	lsm4	61	88.636	Kryptolebias_marmoratus
ENSODEG00000004519	-	72	86.869	ENSLBEG00000027930	lsm4	59	88.636	Labrus_bergylta
ENSODEG00000004519	-	99	72.993	ENSLACG00000015861	LSM4	98	69.343	Latimeria_chalumnae
ENSODEG00000004519	-	72	85.000	ENSLOCG00000002025	lsm4	96	77.206	Lepisosteus_oculatus
ENSODEG00000004519	-	99	73.913	ENSLAFG00000017459	LSM4	99	86.232	Loxodonta_africana
ENSODEG00000004519	-	100	74.820	ENSMFAG00000031194	LSM4	100	87.050	Macaca_fascicularis
ENSODEG00000004519	-	100	74.820	ENSMMUG00000004405	LSM4	100	87.050	Macaca_mulatta
ENSODEG00000004519	-	100	74.820	ENSMNEG00000042899	LSM4	100	87.050	Macaca_nemestrina
ENSODEG00000004519	-	100	74.820	ENSMLEG00000027948	LSM4	100	87.050	Mandrillus_leucophaeus
ENSODEG00000004519	-	99	67.114	ENSMAMG00000006190	lsm4	62	88.636	Mastacembelus_armatus
ENSODEG00000004519	-	99	70.423	ENSMZEG00005016420	lsm4	60	88.636	Maylandia_zebra
ENSODEG00000004519	-	99	73.381	ENSMGAG00000004976	LSM4	99	78.261	Meleagris_gallopavo
ENSODEG00000004519	-	100	78.417	ENSMICG00000000222	LSM4	100	86.331	Microcebus_murinus
ENSODEG00000004519	-	100	73.913	ENSMOCG00000020861	Lsm4	100	84.058	Microtus_ochrogaster
ENSODEG00000004519	-	89	70.968	ENSMODG00000015044	-	100	82.258	Monodelphis_domestica
ENSODEG00000004519	-	99	69.565	ENSMALG00000018159	lsm4	62	88.636	Monopterus_albus
ENSODEG00000004519	-	100	73.913	MGP_CAROLIEiJ_G0031158	Lsm4	100	84.058	Mus_caroli
ENSODEG00000004519	-	100	73.913	ENSMUSG00000031848	Lsm4	100	84.058	Mus_musculus
ENSODEG00000004519	-	100	73.913	MGP_PahariEiJ_G0021623	Lsm4	100	84.058	Mus_pahari
ENSODEG00000004519	-	100	73.913	MGP_SPRETEiJ_G0032276	Lsm4	100	84.058	Mus_spretus
ENSODEG00000004519	-	100	74.820	ENSMPUG00000015589	LSM4	100	87.050	Mustela_putorius_furo
ENSODEG00000004519	-	99	74.638	ENSMLUG00000004010	LSM4	99	86.957	Myotis_lucifugus
ENSODEG00000004519	-	100	73.381	ENSNGAG00000008644	Lsm4	100	83.453	Nannospalax_galili
ENSODEG00000004519	-	71	86.735	ENSNBRG00000022150	lsm4	54	88.506	Neolamprologus_brichardi
ENSODEG00000004519	-	89	81.452	ENSMEUG00000013229	LSM4	100	79.839	Notamacropus_eugenii
ENSODEG00000004519	-	89	77.419	ENSOPRG00000005575	LSM4	100	77.049	Ochotona_princeps
ENSODEG00000004519	-	80	75.000	ENSONIG00000012724	lsm4	60	88.636	Oreochromis_niloticus
ENSODEG00000004519	-	63	83.516	ENSOANG00000007434	LSM4	78	83.516	Ornithorhynchus_anatinus
ENSODEG00000004519	-	99	71.831	ENSORLG00000008391	lsm4	97	69.784	Oryzias_latipes
ENSODEG00000004519	-	99	67.114	ENSORLG00020014829	lsm4	97	69.784	Oryzias_latipes_hni
ENSODEG00000004519	-	99	67.785	ENSORLG00015010205	lsm4	97	69.784	Oryzias_latipes_hsok
ENSODEG00000004519	-	100	70.290	ENSOMEG00000003606	lsm4	61	87.500	Oryzias_melastigma
ENSODEG00000004519	-	72	87.879	ENSOGAG00000027992	LSM4	60	89.655	Otolemur_garnettii
ENSODEG00000004519	-	63	89.655	ENSOARG00000012553	LSM4	94	85.714	Ovis_aries
ENSODEG00000004519	-	100	74.820	ENSPPAG00000044045	-	100	87.050	Pan_paniscus
ENSODEG00000004519	-	100	74.820	ENSPPRG00000018264	LSM4	100	87.050	Panthera_pardus
ENSODEG00000004519	-	99	74.638	ENSPTIG00000006306	LSM4	100	86.957	Panthera_tigris_altaica
ENSODEG00000004519	-	100	74.820	ENSPTRG00000031470	LSM4	100	87.050	Pan_troglodytes
ENSODEG00000004519	-	100	74.820	ENSPANG00000014399	LSM4	100	87.050	Papio_anubis
ENSODEG00000004519	-	99	72.263	ENSPKIG00000006154	lsm4	96	77.206	Paramormyrops_kingsleyae
ENSODEG00000004519	-	99	71.739	ENSPSIG00000012358	LSM4	100	81.752	Pelodiscus_sinensis
ENSODEG00000004519	-	100	73.913	ENSPEMG00000001358	Lsm4	100	84.058	Peromyscus_maniculatus_bairdii
ENSODEG00000004519	-	99	74.101	ENSPLAG00000016267	lsm4	62	88.636	Poecilia_latipinna
ENSODEG00000004519	-	98	71.014	ENSPMEG00000016378	lsm4	63	88.506	Poecilia_mexicana
ENSODEG00000004519	-	100	74.820	ENSPPYG00000009736	LSM4	100	87.050	Pongo_abelii
ENSODEG00000004519	-	89	71.774	ENSPCAG00000008513	LSM4	100	85.484	Procavia_capensis
ENSODEG00000004519	-	100	78.417	ENSPCOG00000019837	LSM4	100	86.331	Propithecus_coquereli
ENSODEG00000004519	-	100	74.820	ENSPVAG00000015383	LSM4	100	87.050	Pteropus_vampyrus
ENSODEG00000004519	-	99	70.423	ENSPNYG00000016794	lsm4	60	88.636	Pundamilia_nyererei
ENSODEG00000004519	-	96	73.134	ENSPNAG00000016598	lsm4	99	73.485	Pygocentrus_nattereri
ENSODEG00000004519	-	100	73.913	ENSRNOG00000019572	Lsm4	100	84.058	Rattus_norvegicus
ENSODEG00000004519	-	100	74.820	ENSRBIG00000024717	LSM4	100	87.050	Rhinopithecus_bieti
ENSODEG00000004519	-	100	74.820	ENSRROG00000045706	LSM4	100	87.050	Rhinopithecus_roxellana
ENSODEG00000004519	-	90	72.800	ENSSBOG00000022455	LSM4	100	86.400	Saimiri_boliviensis_boliviensis
ENSODEG00000004519	-	100	73.381	ENSSHAG00000011559	LSM4	100	83.453	Sarcophilus_harrisii
ENSODEG00000004519	-	99	72.794	ENSSFOG00015021067	lsm4	98	73.913	Scleropages_formosus
ENSODEG00000004519	-	72	85.859	ENSSMAG00000021020	lsm4	59	88.636	Scophthalmus_maximus
ENSODEG00000004519	-	72	86.869	ENSSDUG00000009588	lsm4	53	88.636	Seriola_dumerili
ENSODEG00000004519	-	72	86.869	ENSSLDG00000006827	lsm4	52	88.636	Seriola_lalandi_dorsalis
ENSODEG00000004519	-	63	88.506	ENSSPUG00000010166	LSM4	56	88.506	Sphenodon_punctatus
ENSODEG00000004519	-	72	86.869	ENSSPAG00000011615	lsm4	58	88.636	Stegastes_partitus
ENSODEG00000004519	-	100	74.820	ENSSSCG00000034314	LSM4	100	87.050	Sus_scrofa
ENSODEG00000004519	-	80	74.194	ENSTRUG00000021737	lsm4	62	86.364	Takifugu_rubripes
ENSODEG00000004519	-	99	72.662	ENSTNIG00000010191	lsm4	61	87.500	Tetraodon_nigroviridis
ENSODEG00000004519	-	99	74.638	ENSUAMG00000000665	LSM4	99	86.957	Ursus_americanus
ENSODEG00000004519	-	100	74.820	ENSUMAG00000009013	LSM4	100	87.050	Ursus_maritimus
ENSODEG00000004519	-	99	74.638	ENSVVUG00000008136	LSM4	71	86.957	Vulpes_vulpes
ENSODEG00000004519	-	100	71.739	ENSXETG00000024933	lsm4	100	80.435	Xenopus_tropicalis