EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000004577 (Gene tree)
Gene ID: 101582640
Gene Symbol: RPUSD4
Alias: -
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 13999 bases
Position: chrJH651651.1:2560156-2574154
Accession: 101582640
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000006094	PseudoU_synth_2	PF00849.22	1.6e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000006193	RPUSD4-201	1134	XM_004641399	ENSODEP00000006094	377 (aa)	XP_004641456	UPI000333AFB6

Gene Model

Click here to download ENSODEG00000004577's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000004577's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000004577	RPUSD4	67	31.387	ENSODEG00000018137	RPUSD3	89	31.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000004577	RPUSD4	100	80.902	ENSG00000165526	RPUSD4	100	80.902	Homo_sapiens
ENSODEG00000004577	RPUSD4	94	50.000	ENSAPOG00000011024	rpusd4	90	50.000	Acanthochromis_polyacanthus
ENSODEG00000004577	RPUSD4	67	78.169	ENSAMEG00000005953	-	100	78.169	Ailuropoda_melanoleuca
ENSODEG00000004577	RPUSD4	100	80.106	ENSAMEG00000000127	-	100	80.106	Ailuropoda_melanoleuca
ENSODEG00000004577	RPUSD4	86	49.240	ENSACIG00000003533	rpusd4	96	49.240	Amphilophus_citrinellus
ENSODEG00000004577	RPUSD4	88	52.507	ENSAOCG00000015409	rpusd4	83	52.507	Amphiprion_ocellaris
ENSODEG00000004577	RPUSD4	88	52.802	ENSAPEG00000018935	rpusd4	83	52.802	Amphiprion_percula
ENSODEG00000004577	RPUSD4	88	50.147	ENSATEG00000008059	rpusd4	83	50.147	Anabas_testudineus
ENSODEG00000004577	RPUSD4	73	58.781	ENSAPLG00000013250	RPUSD4	99	57.966	Anas_platyrhynchos
ENSODEG00000004577	RPUSD4	97	58.967	ENSACAG00000000189	RPUSD4	100	58.967	Anolis_carolinensis
ENSODEG00000004577	RPUSD4	99	81.452	ENSANAG00000024050	RPUSD4	100	81.452	Aotus_nancymaae
ENSODEG00000004577	RPUSD4	93	48.870	ENSACLG00000020996	rpusd4	90	48.870	Astatotilapia_calliptera
ENSODEG00000004577	RPUSD4	90	49.568	ENSAMXG00000031479	rpusd4	95	50.296	Astyanax_mexicanus
ENSODEG00000004577	RPUSD4	98	78.226	ENSBTAG00000020900	RPUSD4	98	78.226	Bos_taurus
ENSODEG00000004577	RPUSD4	98	80.541	ENSCJAG00000042850	RPUSD4	93	80.541	Callithrix_jacchus
ENSODEG00000004577	RPUSD4	100	79.894	ENSCAFG00000010488	RPUSD4	100	79.894	Canis_familiaris
ENSODEG00000004577	RPUSD4	100	79.894	ENSCAFG00020010621	RPUSD4	100	79.894	Canis_lupus_dingo
ENSODEG00000004577	RPUSD4	98	79.357	ENSCHIG00000009975	RPUSD4	98	79.357	Capra_hircus
ENSODEG00000004577	RPUSD4	100	83.289	ENSTSYG00000008456	RPUSD4	100	83.289	Carlito_syrichta
ENSODEG00000004577	RPUSD4	68	87.209	ENSCAPG00000006040	RPUSD4	100	87.209	Cavia_aperea
ENSODEG00000004577	RPUSD4	100	88.594	ENSCPOG00000014971	RPUSD4	100	88.594	Cavia_porcellus
ENSODEG00000004577	RPUSD4	99	81.452	ENSCCAG00000027838	RPUSD4	100	81.452	Cebus_capucinus
ENSODEG00000004577	RPUSD4	100	81.432	ENSCATG00000041570	RPUSD4	100	81.432	Cercocebus_atys
ENSODEG00000004577	RPUSD4	100	90.186	ENSCLAG00000016553	RPUSD4	100	90.186	Chinchilla_lanigera
ENSODEG00000004577	RPUSD4	100	80.371	ENSCSAG00000002274	RPUSD4	100	80.371	Chlorocebus_sabaeus
ENSODEG00000004577	RPUSD4	75	82.332	ENSCHOG00000010249	RPUSD4	100	82.332	Choloepus_hoffmanni
ENSODEG00000004577	RPUSD4	76	66.436	ENSCPBG00000011175	RPUSD4	99	66.436	Chrysemys_picta_bellii
ENSODEG00000004577	RPUSD4	76	41.497	ENSCSAVG00000000872	-	57	41.497	Ciona_savignyi
ENSODEG00000004577	RPUSD4	100	80.106	ENSCANG00000039684	RPUSD4	100	80.106	Colobus_angolensis_palliatus
ENSODEG00000004577	RPUSD4	100	81.698	ENSCGRG00001024141	Rpusd4	99	81.698	Cricetulus_griseus_chok1gshd
ENSODEG00000004577	RPUSD4	100	81.698	ENSCGRG00000014415	Rpusd4	99	81.698	Cricetulus_griseus_crigri
ENSODEG00000004577	RPUSD4	88	50.445	ENSCVAG00000000392	rpusd4	95	50.445	Cyprinodon_variegatus
ENSODEG00000004577	RPUSD4	88	50.148	ENSCVAG00000008761	rpusd4	86	50.148	Cyprinodon_variegatus
ENSODEG00000004577	RPUSD4	85	51.227	ENSDARG00000012674	rpusd4	97	48.857	Danio_rerio
ENSODEG00000004577	RPUSD4	100	77.984	ENSDNOG00000020026	RPUSD4	100	77.984	Dasypus_novemcinctus
ENSODEG00000004577	RPUSD4	98	80.863	ENSDORG00000016717	Rpusd4	98	80.863	Dipodomys_ordii
ENSODEG00000004577	RPUSD4	98	78.552	ENSETEG00000013953	RPUSD4	99	78.552	Echinops_telfairi
ENSODEG00000004577	RPUSD4	100	82.228	ENSEASG00005022982	RPUSD4	100	82.228	Equus_asinus_asinus
ENSODEG00000004577	RPUSD4	100	81.963	ENSECAG00000000557	RPUSD4	100	81.963	Equus_caballus
ENSODEG00000004577	RPUSD4	81	78.610	ENSEEUG00000014036	RPUSD4	81	78.610	Erinaceus_europaeus
ENSODEG00000004577	RPUSD4	88	53.468	ENSELUG00000008075	rpusd4	90	53.468	Esox_lucius
ENSODEG00000004577	RPUSD4	100	80.371	ENSFCAG00000029789	RPUSD4	100	80.371	Felis_catus
ENSODEG00000004577	RPUSD4	88	57.015	ENSFALG00000005171	RPUSD4	99	57.015	Ficedula_albicollis
ENSODEG00000004577	RPUSD4	100	86.207	ENSFDAG00000014307	RPUSD4	100	86.207	Fukomys_damarensis
ENSODEG00000004577	RPUSD4	88	50.296	ENSFHEG00000004329	rpusd4	87	50.296	Fundulus_heteroclitus
ENSODEG00000004577	RPUSD4	85	50.613	ENSGMOG00000017726	rpusd4	96	50.613	Gadus_morhua
ENSODEG00000004577	RPUSD4	74	61.348	ENSGALG00000024326	RPUSD4	99	55.710	Gallus_gallus
ENSODEG00000004577	RPUSD4	88	47.522	ENSGAFG00000021559	rpusd4	87	47.522	Gambusia_affinis
ENSODEG00000004577	RPUSD4	89	49.412	ENSGACG00000001657	rpusd4	100	49.412	Gasterosteus_aculeatus
ENSODEG00000004577	RPUSD4	95	61.667	ENSGAGG00000000132	RPUSD4	98	61.667	Gopherus_agassizii
ENSODEG00000004577	RPUSD4	100	80.637	ENSGGOG00000016494	RPUSD4	100	80.637	Gorilla_gorilla
ENSODEG00000004577	RPUSD4	93	48.870	ENSHBUG00000022838	rpusd4	90	48.870	Haplochromis_burtoni
ENSODEG00000004577	RPUSD4	100	88.859	ENSHGLG00000002285	RPUSD4	100	88.859	Heterocephalus_glaber_female
ENSODEG00000004577	RPUSD4	100	88.859	ENSHGLG00100006385	RPUSD4	100	88.859	Heterocephalus_glaber_male
ENSODEG00000004577	RPUSD4	86	51.515	ENSHCOG00000006612	rpusd4	84	51.515	Hippocampus_comes
ENSODEG00000004577	RPUSD4	92	52.149	ENSIPUG00000023879	rusd4	90	52.149	Ictalurus_punctatus
ENSODEG00000004577	RPUSD4	97	83.516	ENSSTOG00000025280	RPUSD4	100	83.516	Ictidomys_tridecemlineatus
ENSODEG00000004577	RPUSD4	99	81.989	ENSJJAG00000018673	Rpusd4	100	81.989	Jaculus_jaculus
ENSODEG00000004577	RPUSD4	89	52.059	ENSKMAG00000021805	rpusd4	88	52.059	Kryptolebias_marmoratus
ENSODEG00000004577	RPUSD4	86	51.212	ENSLBEG00000020394	rpusd4	92	51.212	Labrus_bergylta
ENSODEG00000004577	RPUSD4	85	61.111	ENSLACG00000011028	RPUSD4	85	59.701	Latimeria_chalumnae
ENSODEG00000004577	RPUSD4	85	49.383	ENSLOCG00000003124	rpusd4	86	49.383	Lepisosteus_oculatus
ENSODEG00000004577	RPUSD4	100	78.780	ENSLAFG00000005211	RPUSD4	100	78.780	Loxodonta_africana
ENSODEG00000004577	RPUSD4	100	81.698	ENSMFAG00000039513	RPUSD4	100	81.698	Macaca_fascicularis
ENSODEG00000004577	RPUSD4	100	81.432	ENSMMUG00000007933	RPUSD4	100	81.432	Macaca_mulatta
ENSODEG00000004577	RPUSD4	100	81.432	ENSMNEG00000027414	RPUSD4	100	81.432	Macaca_nemestrina
ENSODEG00000004577	RPUSD4	100	81.167	ENSMLEG00000042461	RPUSD4	100	81.167	Mandrillus_leucophaeus
ENSODEG00000004577	RPUSD4	94	47.527	ENSMAMG00000023839	rpusd4	94	47.527	Mastacembelus_armatus
ENSODEG00000004577	RPUSD4	93	48.870	ENSMZEG00005011999	rpusd4	90	48.870	Maylandia_zebra
ENSODEG00000004577	RPUSD4	74	60.714	ENSMGAG00000000840	RPUSD4	99	58.642	Meleagris_gallopavo
ENSODEG00000004577	RPUSD4	100	79.576	ENSMAUG00000010280	Rpusd4	100	79.576	Mesocricetus_auratus
ENSODEG00000004577	RPUSD4	100	81.963	ENSMICG00000015979	RPUSD4	100	81.963	Microcebus_murinus
ENSODEG00000004577	RPUSD4	100	77.984	ENSMOCG00000000661	Rpusd4	99	77.984	Microtus_ochrogaster
ENSODEG00000004577	RPUSD4	84	51.562	ENSMMOG00000021731	rpusd4	93	51.562	Mola_mola
ENSODEG00000004577	RPUSD4	92	72.334	ENSMODG00000004521	RPUSD4	89	72.334	Monodelphis_domestica
ENSODEG00000004577	RPUSD4	80	52.443	ENSMALG00000005839	rpusd4	97	51.393	Monopterus_albus
ENSODEG00000004577	RPUSD4	100	78.780	MGP_CAROLIEiJ_G0031954	Rpusd4	100	78.780	Mus_caroli
ENSODEG00000004577	RPUSD4	100	78.780	ENSMUSG00000032044	Rpusd4	100	78.780	Mus_musculus
ENSODEG00000004577	RPUSD4	100	78.780	MGP_PahariEiJ_G0014819	Rpusd4	100	78.780	Mus_pahari
ENSODEG00000004577	RPUSD4	100	79.045	MGP_SPRETEiJ_G0033078	Rpusd4	100	79.045	Mus_spretus
ENSODEG00000004577	RPUSD4	98	78.167	ENSMPUG00000006608	RPUSD4	99	78.167	Mustela_putorius_furo
ENSODEG00000004577	RPUSD4	97	80.109	ENSMLUG00000017328	-	97	80.109	Myotis_lucifugus
ENSODEG00000004577	RPUSD4	67	83.071	ENSMLUG00000029348	-	100	83.071	Myotis_lucifugus
ENSODEG00000004577	RPUSD4	98	81.233	ENSNGAG00000020847	Rpusd4	98	81.233	Nannospalax_galili
ENSODEG00000004577	RPUSD4	86	51.368	ENSNBRG00000005207	rpusd4	95	51.368	Neolamprologus_brichardi
ENSODEG00000004577	RPUSD4	100	80.371	ENSNLEG00000007465	RPUSD4	100	80.371	Nomascus_leucogenys
ENSODEG00000004577	RPUSD4	98	68.108	ENSMEUG00000004370	RPUSD4	99	68.108	Notamacropus_eugenii
ENSODEG00000004577	RPUSD4	70	58.491	ENSOPRG00000013141	-	100	58.491	Ochotona_princeps
ENSODEG00000004577	RPUSD4	95	49.036	ENSONIG00000018879	rpusd4	96	49.036	Oreochromis_niloticus
ENSODEG00000004577	RPUSD4	77	68.707	ENSOANG00000007247	RPUSD4	95	68.350	Ornithorhynchus_anatinus
ENSODEG00000004577	RPUSD4	99	82.620	ENSOCUG00000017039	RPUSD4	99	82.620	Oryctolagus_cuniculus
ENSODEG00000004577	RPUSD4	92	49.148	ENSORLG00000002750	rpusd4	95	49.148	Oryzias_latipes
ENSODEG00000004577	RPUSD4	93	48.747	ENSORLG00020002044	rpusd4	89	48.747	Oryzias_latipes_hni
ENSODEG00000004577	RPUSD4	93	47.922	ENSORLG00015020034	rpusd4	82	50.301	Oryzias_latipes_hsok
ENSODEG00000004577	RPUSD4	89	51.170	ENSOMEG00000004861	rpusd4	83	51.170	Oryzias_melastigma
ENSODEG00000004577	RPUSD4	100	82.011	ENSOGAG00000008922	RPUSD4	100	82.011	Otolemur_garnettii
ENSODEG00000004577	RPUSD4	96	80.220	ENSOARG00000012238	RPUSD4	96	80.220	Ovis_aries
ENSODEG00000004577	RPUSD4	100	81.167	ENSPPAG00000042883	RPUSD4	93	81.167	Pan_paniscus
ENSODEG00000004577	RPUSD4	100	80.371	ENSPPRG00000003081	RPUSD4	100	80.371	Panthera_pardus
ENSODEG00000004577	RPUSD4	100	80.371	ENSPTIG00000012059	RPUSD4	100	80.371	Panthera_tigris_altaica
ENSODEG00000004577	RPUSD4	100	80.902	ENSPTRG00000004454	RPUSD4	100	80.902	Pan_troglodytes
ENSODEG00000004577	RPUSD4	100	81.963	ENSPANG00000015040	RPUSD4	100	81.963	Papio_anubis
ENSODEG00000004577	RPUSD4	89	55.621	ENSPKIG00000023986	rpusd4	86	55.621	Paramormyrops_kingsleyae
ENSODEG00000004577	RPUSD4	79	65.333	ENSPSIG00000014268	RPUSD4	95	65.333	Pelodiscus_sinensis
ENSODEG00000004577	RPUSD4	92	48.442	ENSPMGG00000002806	rpusd4	91	49.848	Periophthalmus_magnuspinnatus
ENSODEG00000004577	RPUSD4	100	72.679	ENSPEMG00000000278	Rpusd4	100	72.679	Peromyscus_maniculatus_bairdii
ENSODEG00000004577	RPUSD4	80	45.075	ENSPMAG00000008183	rpusd4	97	45.075	Petromyzon_marinus
ENSODEG00000004577	RPUSD4	97	70.330	ENSPCIG00000010212	RPUSD4	100	70.330	Phascolarctos_cinereus
ENSODEG00000004577	RPUSD4	88	49.275	ENSPFOG00000019030	rpusd4	90	49.275	Poecilia_formosa
ENSODEG00000004577	RPUSD4	88	49.854	ENSPLAG00000016848	rpusd4	87	49.854	Poecilia_latipinna
ENSODEG00000004577	RPUSD4	88	48.688	ENSPMEG00000017534	rpusd4	87	48.688	Poecilia_mexicana
ENSODEG00000004577	RPUSD4	94	47.671	ENSPREG00000005689	rpusd4	94	47.671	Poecilia_reticulata
ENSODEG00000004577	RPUSD4	100	81.698	ENSPPYG00000004043	RPUSD4	100	81.698	Pongo_abelii
ENSODEG00000004577	RPUSD4	80	77.174	ENSPCAG00000000753	RPUSD4	81	77.174	Procavia_capensis
ENSODEG00000004577	RPUSD4	98	76.550	ENSPCOG00000020694	RPUSD4	100	76.550	Propithecus_coquereli
ENSODEG00000004577	RPUSD4	98	81.081	ENSPVAG00000000988	RPUSD4	99	81.081	Pteropus_vampyrus
ENSODEG00000004577	RPUSD4	93	48.305	ENSPNYG00000009652	rpusd4	90	48.305	Pundamilia_nyererei
ENSODEG00000004577	RPUSD4	96	49.041	ENSPNAG00000012264	rpusd4	95	49.041	Pygocentrus_nattereri
ENSODEG00000004577	RPUSD4	100	79.310	ENSRNOG00000011567	Rpusd4	100	79.310	Rattus_norvegicus
ENSODEG00000004577	RPUSD4	100	81.167	ENSRBIG00000034842	RPUSD4	100	81.167	Rhinopithecus_bieti
ENSODEG00000004577	RPUSD4	100	81.167	ENSRROG00000039753	RPUSD4	100	81.167	Rhinopithecus_roxellana
ENSODEG00000004577	RPUSD4	99	79.301	ENSSBOG00000030413	RPUSD4	100	79.301	Saimiri_boliviensis_boliviensis
ENSODEG00000004577	RPUSD4	80	74.086	ENSSHAG00000008304	RPUSD4	99	74.086	Sarcophilus_harrisii
ENSODEG00000004577	RPUSD4	88	56.637	ENSSFOG00015006203	rpusd4	92	56.637	Scleropages_formosus
ENSODEG00000004577	RPUSD4	89	49.706	ENSSMAG00000020978	rpusd4	88	49.706	Scophthalmus_maximus
ENSODEG00000004577	RPUSD4	88	48.083	ENSSDUG00000013399	rpusd4	88	48.083	Seriola_dumerili
ENSODEG00000004577	RPUSD4	88	47.788	ENSSLDG00000023507	rpusd4	88	47.788	Seriola_lalandi_dorsalis
ENSODEG00000004577	RPUSD4	89	60.294	ENSSPUG00000001401	RPUSD4	94	61.176	Sphenodon_punctatus
ENSODEG00000004577	RPUSD4	96	50.407	ENSSPAG00000012163	rpusd4	94	50.407	Stegastes_partitus
ENSODEG00000004577	RPUSD4	98	82.749	ENSSSCG00000015233	RPUSD4	98	82.749	Sus_scrofa
ENSODEG00000004577	RPUSD4	79	60.000	ENSTGUG00000000773	RPUSD4	100	60.000	Taeniopygia_guttata
ENSODEG00000004577	RPUSD4	86	51.212	ENSTRUG00000012283	rpusd4	84	51.212	Takifugu_rubripes
ENSODEG00000004577	RPUSD4	90	48.703	ENSTNIG00000014676	rpusd4	88	48.703	Tetraodon_nigroviridis
ENSODEG00000004577	RPUSD4	100	80.371	ENSTTRG00000001555	RPUSD4	100	80.371	Tursiops_truncatus
ENSODEG00000004577	RPUSD4	100	80.106	ENSUMAG00000002219	RPUSD4	100	80.106	Ursus_maritimus
ENSODEG00000004577	RPUSD4	70	82.642	ENSVPAG00000001066	RPUSD4	100	82.642	Vicugna_pacos
ENSODEG00000004577	RPUSD4	100	80.423	ENSVVUG00000020101	RPUSD4	100	80.423	Vulpes_vulpes
ENSODEG00000004577	RPUSD4	95	47.439	ENSXCOG00000004676	rpusd4	94	47.439	Xiphophorus_couchianus
ENSODEG00000004577	RPUSD4	95	47.170	ENSXMAG00000023351	rpusd4	94	47.170	Xiphophorus_maculatus