EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000004865 (Gene tree)
Gene ID: 101562342
Gene Symbol: SRP54
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 65104 bases
Position: chrJH651601.1:4534714-4599817
Accession: 101562342
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000006513	SRP54	PF00448.22	1.8e-78	1	1
ENSODEP00000006512	SRP54	PF00448.22	1.9e-78	1	1
ENSODEP00000006512	SRP54_N	PF02881.19	1.6e-20	1	1
ENSODEP00000006513	SRP54_N	PF02881.19	2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000006617	SRP54-202	1473	-	ENSODEP00000006513	490 (aa)	-	-
ENSODET00000006616	SRP54-201	1804	XM_004637091	ENSODEP00000006512	504 (aa)	XP_004637148	UPI0000135EE0

Gene Model

Click here to download ENSODEG00000004865's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000004865's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000004865	SRP54	100	100.000	ENSG00000100883	SRP54	100	100.000	Homo_sapiens
ENSODEG00000004865	SRP54	100	95.833	ENSAPOG00000011314	srp54	100	95.833	Acanthochromis_polyacanthus
ENSODEG00000004865	SRP54	100	100.000	ENSAMEG00000015544	SRP54	100	100.000	Ailuropoda_melanoleuca
ENSODEG00000004865	SRP54	89	94.655	ENSACIG00000022831	srp54	97	94.655	Amphilophus_citrinellus
ENSODEG00000004865	SRP54	100	95.833	ENSAOCG00000019401	srp54	100	95.833	Amphiprion_ocellaris
ENSODEG00000004865	SRP54	100	95.833	ENSAPEG00000001977	srp54	100	95.833	Amphiprion_percula
ENSODEG00000004865	SRP54	100	96.230	ENSATEG00000013877	srp54	100	96.230	Anabas_testudineus
ENSODEG00000004865	SRP54	94	98.734	ENSAPLG00000010125	SRP54	95	98.734	Anas_platyrhynchos
ENSODEG00000004865	SRP54	86	95.622	ENSACAG00000010631	-	100	95.622	Anolis_carolinensis
ENSODEG00000004865	SRP54	100	98.611	ENSACAG00000002103	-	100	98.611	Anolis_carolinensis
ENSODEG00000004865	SRP54	65	81.873	ENSACAG00000001124	-	100	81.873	Anolis_carolinensis
ENSODEG00000004865	SRP54	100	100.000	ENSANAG00000022133	SRP54	100	100.000	Aotus_nancymaae
ENSODEG00000004865	SRP54	100	96.032	ENSACLG00000015866	srp54	100	96.032	Astatotilapia_calliptera
ENSODEG00000004865	SRP54	100	95.635	ENSAMXG00000032669	SRP54	100	95.635	Astyanax_mexicanus
ENSODEG00000004865	SRP54	100	100.000	ENSBTAG00000019085	SRP54	100	100.000	Bos_taurus
ENSODEG00000004865	SRP54	98	71.687	WBGene00009012	F21D5.7	100	71.687	Caenorhabditis_elegans
ENSODEG00000004865	SRP54	100	100.000	ENSCJAG00000006581	SRP54	100	100.000	Callithrix_jacchus
ENSODEG00000004865	SRP54	100	100.000	ENSCAFG00000013331	SRP54	100	100.000	Canis_familiaris
ENSODEG00000004865	SRP54	100	100.000	ENSCAFG00020023427	SRP54	100	100.000	Canis_lupus_dingo
ENSODEG00000004865	SRP54	100	100.000	ENSCHIG00000026345	SRP54	100	100.000	Capra_hircus
ENSODEG00000004865	SRP54	100	99.802	ENSTSYG00000002680	-	100	99.802	Carlito_syrichta
ENSODEG00000004865	SRP54	94	88.632	ENSTSYG00000035333	-	93	88.632	Carlito_syrichta
ENSODEG00000004865	SRP54	94	64.286	ENSCAPG00000008780	SRP54	100	64.286	Cavia_aperea
ENSODEG00000004865	SRP54	100	99.603	ENSCPOG00000003691	SRP54	100	99.603	Cavia_porcellus
ENSODEG00000004865	SRP54	90	99.762	ENSCCAG00000024179	SRP54	100	100.000	Cebus_capucinus
ENSODEG00000004865	SRP54	100	100.000	ENSCATG00000034083	SRP54	100	100.000	Cercocebus_atys
ENSODEG00000004865	SRP54	100	100.000	ENSCLAG00000015076	SRP54	100	100.000	Chinchilla_lanigera
ENSODEG00000004865	SRP54	100	100.000	ENSCSAG00000015575	SRP54	100	100.000	Chlorocebus_sabaeus
ENSODEG00000004865	SRP54	95	87.942	ENSCHOG00000008986	SRP54	100	87.942	Choloepus_hoffmanni
ENSODEG00000004865	SRP54	100	99.206	ENSCPBG00000026195	SRP54	100	99.206	Chrysemys_picta_bellii
ENSODEG00000004865	SRP54	100	81.746	ENSCING00000007380	-	100	81.746	Ciona_intestinalis
ENSODEG00000004865	SRP54	100	100.000	ENSCANG00000028532	SRP54	100	100.000	Colobus_angolensis_palliatus
ENSODEG00000004865	SRP54	100	99.603	ENSCGRG00001009525	-	100	99.603	Cricetulus_griseus_chok1gshd
ENSODEG00000004865	SRP54	76	99.481	ENSCGRG00000009453	-	89	99.481	Cricetulus_griseus_crigri
ENSODEG00000004865	SRP54	100	95.040	ENSCSEG00000012392	srp54	100	95.040	Cynoglossus_semilaevis
ENSODEG00000004865	SRP54	100	95.833	ENSCVAG00000010395	srp54	100	95.833	Cyprinodon_variegatus
ENSODEG00000004865	SRP54	100	96.032	ENSDARG00000098367	srp54	100	96.032	Danio_rerio
ENSODEG00000004865	SRP54	100	100.000	ENSDNOG00000032525	SRP54	100	100.000	Dasypus_novemcinctus
ENSODEG00000004865	SRP54	89	85.045	ENSDORG00000005159	-	97	85.045	Dipodomys_ordii
ENSODEG00000004865	SRP54	96	77.526	FBgn0010747	Srp54k	98	77.108	Drosophila_melanogaster
ENSODEG00000004865	SRP54	83	58.373	ENSETEG00000012102	-	99	58.373	Echinops_telfairi
ENSODEG00000004865	SRP54	100	98.810	ENSETEG00000016307	-	100	98.810	Echinops_telfairi
ENSODEG00000004865	SRP54	100	87.500	ENSEBUG00000009437	-	100	87.500	Eptatretus_burgeri
ENSODEG00000004865	SRP54	100	100.000	ENSEASG00005002057	SRP54	100	100.000	Equus_asinus_asinus
ENSODEG00000004865	SRP54	99	99.799	ENSECAG00000018042	SRP54	98	99.799	Equus_caballus
ENSODEG00000004865	SRP54	100	83.333	ENSEEUG00000001511	SRP54	100	83.333	Erinaceus_europaeus
ENSODEG00000004865	SRP54	100	95.238	ENSELUG00000003395	srp54	100	95.238	Esox_lucius
ENSODEG00000004865	SRP54	100	99.802	ENSFCAG00000032033	SRP54	100	99.802	Felis_catus
ENSODEG00000004865	SRP54	100	98.810	ENSFALG00000005995	SRP54	100	98.810	Ficedula_albicollis
ENSODEG00000004865	SRP54	100	100.000	ENSFDAG00000016767	SRP54	100	100.000	Fukomys_damarensis
ENSODEG00000004865	SRP54	100	95.437	ENSFHEG00000004263	srp54	100	95.437	Fundulus_heteroclitus
ENSODEG00000004865	SRP54	95	90.167	ENSGMOG00000011391	srp54	100	90.167	Gadus_morhua
ENSODEG00000004865	SRP54	100	98.810	ENSGALG00000023135	SRP54	100	98.810	Gallus_gallus
ENSODEG00000004865	SRP54	100	96.032	ENSGAFG00000011586	srp54	100	96.032	Gambusia_affinis
ENSODEG00000004865	SRP54	100	95.437	ENSGACG00000004181	srp54	100	95.437	Gasterosteus_aculeatus
ENSODEG00000004865	SRP54	100	99.206	ENSGAGG00000014766	SRP54	100	99.206	Gopherus_agassizii
ENSODEG00000004865	SRP54	100	100.000	ENSGGOG00000002926	SRP54	100	100.000	Gorilla_gorilla
ENSODEG00000004865	SRP54	100	96.032	ENSHBUG00000005678	srp54	100	96.032	Haplochromis_burtoni
ENSODEG00000004865	SRP54	100	100.000	ENSHGLG00000002850	SRP54	100	100.000	Heterocephalus_glaber_female
ENSODEG00000004865	SRP54	100	100.000	ENSHGLG00100005263	SRP54	100	100.000	Heterocephalus_glaber_male
ENSODEG00000004865	SRP54	100	69.109	ENSHGLG00100007281	-	100	69.109	Heterocephalus_glaber_male
ENSODEG00000004865	SRP54	100	94.048	ENSHCOG00000021127	srp54	100	94.048	Hippocampus_comes
ENSODEG00000004865	SRP54	100	95.238	ENSIPUG00000001420	srp54	100	95.238	Ictalurus_punctatus
ENSODEG00000004865	SRP54	100	100.000	ENSSTOG00000016023	SRP54	100	100.000	Ictidomys_tridecemlineatus
ENSODEG00000004865	SRP54	87	77.465	ENSJJAG00000016404	-	100	77.465	Jaculus_jaculus
ENSODEG00000004865	SRP54	100	94.841	ENSJJAG00000013417	-	100	94.841	Jaculus_jaculus
ENSODEG00000004865	SRP54	100	95.437	ENSKMAG00000007707	srp54	100	95.437	Kryptolebias_marmoratus
ENSODEG00000004865	SRP54	100	95.833	ENSLBEG00000018690	srp54	100	95.833	Labrus_bergylta
ENSODEG00000004865	SRP54	100	95.833	ENSLBEG00000021122	srp54	100	95.833	Labrus_bergylta
ENSODEG00000004865	SRP54	100	96.032	ENSLACG00000017890	SRP54	100	96.032	Latimeria_chalumnae
ENSODEG00000004865	SRP54	100	96.825	ENSLOCG00000009440	srp54	100	96.825	Lepisosteus_oculatus
ENSODEG00000004865	SRP54	100	100.000	ENSLAFG00000012007	SRP54	100	100.000	Loxodonta_africana
ENSODEG00000004865	SRP54	100	100.000	ENSMFAG00000044371	SRP54	100	100.000	Macaca_fascicularis
ENSODEG00000004865	SRP54	100	100.000	ENSMMUG00000015073	FAM177A1	100	100.000	Macaca_mulatta
ENSODEG00000004865	SRP54	100	100.000	ENSMNEG00000006947	SRP54	100	100.000	Macaca_nemestrina
ENSODEG00000004865	SRP54	100	100.000	ENSMLEG00000042251	SRP54	100	100.000	Mandrillus_leucophaeus
ENSODEG00000004865	SRP54	100	96.032	ENSMAMG00000004803	srp54	100	96.032	Mastacembelus_armatus
ENSODEG00000004865	SRP54	100	96.032	ENSMZEG00005027528	srp54	100	96.032	Maylandia_zebra
ENSODEG00000004865	SRP54	100	94.071	ENSMGAG00000012481	SRP54	100	94.071	Meleagris_gallopavo
ENSODEG00000004865	SRP54	100	99.802	ENSMAUG00000014447	-	100	99.802	Mesocricetus_auratus
ENSODEG00000004865	SRP54	100	100.000	ENSMICG00000010270	SRP54	100	100.000	Microcebus_murinus
ENSODEG00000004865	SRP54	87	99.773	ENSMOCG00000000948	-	100	99.773	Microtus_ochrogaster
ENSODEG00000004865	SRP54	89	94.183	ENSMMOG00000020303	srp54	98	94.183	Mola_mola
ENSODEG00000004865	SRP54	100	99.802	ENSMODG00000012925	-	100	99.802	Monodelphis_domestica
ENSODEG00000004865	SRP54	100	99.802	ENSMODG00000023150	-	100	99.802	Monodelphis_domestica
ENSODEG00000004865	SRP54	88	95.485	ENSMALG00000009163	srp54	98	95.485	Monopterus_albus
ENSODEG00000004865	SRP54	100	99.802	MGP_CAROLIEiJ_G0017754	-	100	99.802	Mus_caroli
ENSODEG00000004865	SRP54	100	99.802	ENSMUSG00000112449	Srp54b	100	99.802	Mus_musculus
ENSODEG00000004865	SRP54	100	99.802	ENSMUSG00000073079	Srp54a	100	100.000	Mus_musculus
ENSODEG00000004865	SRP54	100	99.008	ENSMUSG00000079108	Srp54c	100	99.008	Mus_musculus
ENSODEG00000004865	SRP54	100	99.802	MGP_PahariEiJ_G0029510	-	100	99.802	Mus_pahari
ENSODEG00000004865	SRP54	100	100.000	ENSMPUG00000016302	SRP54	100	100.000	Mustela_putorius_furo
ENSODEG00000004865	SRP54	100	99.405	ENSMLUG00000008958	SRP54	100	99.405	Myotis_lucifugus
ENSODEG00000004865	SRP54	100	89.881	ENSNGAG00000019806	-	100	89.881	Nannospalax_galili
ENSODEG00000004865	SRP54	87	95.682	ENSNBRG00000006000	srp54	100	95.682	Neolamprologus_brichardi
ENSODEG00000004865	SRP54	100	100.000	ENSNLEG00000003496	SRP54	100	100.000	Nomascus_leucogenys
ENSODEG00000004865	SRP54	67	100.000	ENSMEUG00000000138	-	76	100.000	Notamacropus_eugenii
ENSODEG00000004865	SRP54	58	100.000	ENSOPRG00000014502	-	60	100.000	Ochotona_princeps
ENSODEG00000004865	SRP54	100	96.032	ENSONIG00000011768	srp54	100	96.032	Oreochromis_niloticus
ENSODEG00000004865	SRP54	100	100.000	ENSOANG00000014051	SRP54	100	100.000	Ornithorhynchus_anatinus
ENSODEG00000004865	SRP54	100	99.405	ENSOCUG00000007838	SRP54	100	99.405	Oryctolagus_cuniculus
ENSODEG00000004865	SRP54	100	95.833	ENSORLG00000010027	srp54	100	95.833	Oryzias_latipes
ENSODEG00000004865	SRP54	100	95.833	ENSORLG00020001878	srp54	100	95.833	Oryzias_latipes_hni
ENSODEG00000004865	SRP54	100	95.833	ENSORLG00015021866	srp54	100	95.833	Oryzias_latipes_hsok
ENSODEG00000004865	SRP54	100	95.635	ENSOMEG00000020952	srp54	100	95.635	Oryzias_melastigma
ENSODEG00000004865	SRP54	100	100.000	ENSOGAG00000012188	SRP54	100	100.000	Otolemur_garnettii
ENSODEG00000004865	SRP54	100	100.000	ENSOARG00000007160	SRP54	100	100.000	Ovis_aries
ENSODEG00000004865	SRP54	100	100.000	ENSPPAG00000017434	SRP54	100	100.000	Pan_paniscus
ENSODEG00000004865	SRP54	100	98.810	ENSPPRG00000014047	SRP54	100	98.810	Panthera_pardus
ENSODEG00000004865	SRP54	100	99.802	ENSPTIG00000000744	SRP54	96	99.802	Panthera_tigris_altaica
ENSODEG00000004865	SRP54	100	100.000	ENSPTRG00000006259	FAM177A1	100	100.000	Pan_troglodytes
ENSODEG00000004865	SRP54	100	100.000	ENSPANG00000023853	SRP54	100	100.000	Papio_anubis
ENSODEG00000004865	SRP54	100	95.635	ENSPKIG00000001953	srp54	100	95.635	Paramormyrops_kingsleyae
ENSODEG00000004865	SRP54	100	99.008	ENSPSIG00000006476	SRP54	100	99.008	Pelodiscus_sinensis
ENSODEG00000004865	SRP54	91	93.043	ENSPMGG00000004127	srp54	99	93.043	Periophthalmus_magnuspinnatus
ENSODEG00000004865	SRP54	100	86.905	ENSPEMG00000019634	-	100	86.905	Peromyscus_maniculatus_bairdii
ENSODEG00000004865	SRP54	100	88.690	ENSPMAG00000006078	-	100	88.690	Petromyzon_marinus
ENSODEG00000004865	SRP54	100	99.802	ENSPCIG00000016175	SRP54	100	99.802	Phascolarctos_cinereus
ENSODEG00000004865	SRP54	100	96.032	ENSPFOG00000008870	srp54	100	96.032	Poecilia_formosa
ENSODEG00000004865	SRP54	100	96.032	ENSPLAG00000009889	srp54	100	96.032	Poecilia_latipinna
ENSODEG00000004865	SRP54	100	96.032	ENSPMEG00000008601	srp54	100	96.032	Poecilia_mexicana
ENSODEG00000004865	SRP54	100	96.032	ENSPREG00000004505	srp54	100	96.032	Poecilia_reticulata
ENSODEG00000004865	SRP54	100	94.841	ENSPPYG00000005739	SRP54	100	94.841	Pongo_abelii
ENSODEG00000004865	SRP54	100	95.833	ENSPCAG00000006268	SRP54	100	95.833	Procavia_capensis
ENSODEG00000004865	SRP54	100	98.020	ENSPCOG00000022473	SRP54	100	98.020	Propithecus_coquereli
ENSODEG00000004865	SRP54	63	100.000	ENSPVAG00000010056	SRP54	82	100.000	Pteropus_vampyrus
ENSODEG00000004865	SRP54	100	96.032	ENSPNYG00000009717	srp54	100	96.032	Pundamilia_nyererei
ENSODEG00000004865	SRP54	100	95.833	ENSPNAG00000008544	srp54	100	95.833	Pygocentrus_nattereri
ENSODEG00000004865	SRP54	100	99.603	ENSRNOG00000032776	Srp54a	100	99.603	Rattus_norvegicus
ENSODEG00000004865	SRP54	100	100.000	ENSRROG00000041292	SRP54	100	100.000	Rhinopithecus_roxellana
ENSODEG00000004865	SRP54	86	53.061	YPR088C	SRP54	95	48.276	Saccharomyces_cerevisiae
ENSODEG00000004865	SRP54	94	100.000	ENSSBOG00000035145	SRP54	100	100.000	Saimiri_boliviensis_boliviensis
ENSODEG00000004865	SRP54	68	100.000	ENSSHAG00000000671	SRP54	100	100.000	Sarcophilus_harrisii
ENSODEG00000004865	SRP54	100	96.230	ENSSFOG00015013920	srp54	100	96.230	Scleropages_formosus
ENSODEG00000004865	SRP54	100	89.888	ENSSMAG00000002441	srp54	100	89.888	Scophthalmus_maximus
ENSODEG00000004865	SRP54	100	95.635	ENSSDUG00000018586	srp54	100	95.635	Seriola_dumerili
ENSODEG00000004865	SRP54	100	95.437	ENSSLDG00000010476	srp54	100	95.437	Seriola_lalandi_dorsalis
ENSODEG00000004865	SRP54	100	100.000	ENSSARG00000002744	SRP54	100	100.000	Sorex_araneus
ENSODEG00000004865	SRP54	100	99.206	ENSSPUG00000013101	SRP54	100	99.206	Sphenodon_punctatus
ENSODEG00000004865	SRP54	100	95.833	ENSSPAG00000002354	srp54	100	95.833	Stegastes_partitus
ENSODEG00000004865	SRP54	100	100.000	ENSSSCG00000001955	SRP54	100	100.000	Sus_scrofa
ENSODEG00000004865	SRP54	94	98.734	ENSTGUG00000011945	-	95	98.734	Taeniopygia_guttata
ENSODEG00000004865	SRP54	100	95.040	ENSTRUG00000007057	srp54	100	95.040	Takifugu_rubripes
ENSODEG00000004865	SRP54	100	94.643	ENSTNIG00000002589	srp54	100	94.643	Tetraodon_nigroviridis
ENSODEG00000004865	SRP54	89	91.499	ENSTBEG00000011409	SRP54	100	91.499	Tupaia_belangeri
ENSODEG00000004865	SRP54	100	89.881	ENSTTRG00000000928	SRP54	100	89.881	Tursiops_truncatus
ENSODEG00000004865	SRP54	53	100.000	ENSUAMG00000012385	SRP54	100	100.000	Ursus_americanus
ENSODEG00000004865	SRP54	100	100.000	ENSUMAG00000011234	SRP54	100	100.000	Ursus_maritimus
ENSODEG00000004865	SRP54	94	99.789	ENSVPAG00000005668	SRP54	100	99.789	Vicugna_pacos
ENSODEG00000004865	SRP54	100	100.000	ENSVVUG00000019962	SRP54	100	100.000	Vulpes_vulpes
ENSODEG00000004865	SRP54	100	82.249	ENSXETG00000012290	srp54	100	82.249	Xenopus_tropicalis
ENSODEG00000004865	SRP54	88	95.937	ENSXCOG00000004658	srp54	96	95.937	Xiphophorus_couchianus
ENSODEG00000004865	SRP54	100	96.032	ENSXMAG00000018315	srp54	100	96.032	Xiphophorus_maculatus