EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000005178 (Gene tree)
Gene ID: 101578303
Gene Symbol: ZC3H13
Alias: DKFZp434D1812|KIAA0853|Xio
Full Name: zinc finger CCCH-type containing 13
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 94864 bases
Position: chrJH651637.1:2660912-2755775
Accession: 101578303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000006946	zf-CCCH	PF00642.24	5.7e-07	1	1
ENSODEP00000006945	zf-CCCH	PF00642.24	5.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000007052	ZC3H13-202	4923	XM_004640266	ENSODEP00000006946	1640 (aa)	XP_004640323	-
ENSODET00000007051	ZC3H13-201	5313	XM_004640265	ENSODEP00000006945	1653 (aa)	XP_004640322	UPI000333892B

Gene Model

Click here to download ENSODEG00000005178's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000005178's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000005178	ZC3H13	53	83.713	ENSAMEG00000013117	ZC3H13	53	85.240	Ailuropoda_melanoleuca
ENSODEG00000005178	ZC3H13	53	82.766	ENSANAG00000033079	ZC3H13	53	85.601	Aotus_nancymaae
ENSODEG00000005178	ZC3H13	53	82.446	ENSCJAG00000016756	ZC3H13	53	85.164	Callithrix_jacchus
ENSODEG00000005178	ZC3H13	53	84.501	ENSCAFG00000004511	ZC3H13	53	85.993	Canis_familiaris
ENSODEG00000005178	ZC3H13	53	84.289	ENSCAFG00020019269	ZC3H13	96	93.204	Canis_lupus_dingo
ENSODEG00000005178	ZC3H13	52	83.275	ENSCHIG00000020072	ZC3H13	53	83.622	Capra_hircus
ENSODEG00000005178	ZC3H13	52	86.775	ENSTSYG00000000992	ZC3H13	53	86.400	Carlito_syrichta
ENSODEG00000005178	ZC3H13	53	93.234	ENSCPOG00000000646	ZC3H13	53	92.890	Cavia_porcellus
ENSODEG00000005178	ZC3H13	100	95.224	ENSCLAG00000000610	ZC3H13	53	93.578	Chinchilla_lanigera
ENSODEG00000005178	ZC3H13	87	93.805	ENSCHOG00000009724	ZC3H13	87	93.805	Choloepus_hoffmanni
ENSODEG00000005178	ZC3H13	53	83.258	ENSCANG00000037422	ZC3H13	53	85.407	Colobus_angolensis_palliatus
ENSODEG00000005178	ZC3H13	53	84.447	ENSDNOG00000005390	ZC3H13	53	84.562	Dasypus_novemcinctus
ENSODEG00000005178	ZC3H13	53	85.731	ENSDORG00000000600	Zc3h13	53	86.400	Dipodomys_ordii
ENSODEG00000005178	ZC3H13	53	86.866	ENSEASG00005017100	ZC3H13	52	86.766	Equus_asinus_asinus
ENSODEG00000005178	ZC3H13	53	87.442	ENSECAG00000022843	ZC3H13	54	87.558	Equus_caballus
ENSODEG00000005178	ZC3H13	53	84.730	ENSFCAG00000004877	ZC3H13	52	86.223	Felis_catus
ENSODEG00000005178	ZC3H13	53	88.813	ENSFDAG00000012323	ZC3H13	52	89.269	Fukomys_damarensis
ENSODEG00000005178	ZC3H13	85	53.537	ENSGACG00000015166	zc3h13	92	54.313	Gasterosteus_aculeatus
ENSODEG00000005178	ZC3H13	53	92.546	ENSHGLG00000006309	ZC3H13	53	92.546	Heterocephalus_glaber_female
ENSODEG00000005178	ZC3H13	54	87.375	ENSHGLG00100007460	ZC3H13	50	92.243	Heterocephalus_glaber_male
ENSODEG00000005178	ZC3H13	53	85.371	ENSSTOG00000029682	ZC3H13	53	87.771	Ictidomys_tridecemlineatus
ENSODEG00000005178	ZC3H13	53	84.571	ENSJJAG00000019971	Zc3h13	53	84.509	Jaculus_jaculus
ENSODEG00000005178	ZC3H13	54	39.489	ENSKMAG00000010701	zc3h13	100	45.710	Kryptolebias_marmoratus
ENSODEG00000005178	ZC3H13	66	66.950	ENSLACG00000003806	ZC3H13	57	65.574	Latimeria_chalumnae
ENSODEG00000005178	ZC3H13	58	85.246	ENSMLEG00000039387	ZC3H13	70	95.181	Mandrillus_leucophaeus
ENSODEG00000005178	ZC3H13	53	69.336	ENSMGAG00000014996	ZC3H13	51	68.930	Meleagris_gallopavo
ENSODEG00000005178	ZC3H13	53	85.000	ENSMICG00000014772	ZC3H13	53	85.358	Microcebus_murinus
ENSODEG00000005178	ZC3H13	53	82.048	MGP_CAROLIEiJ_G0019512	Zc3h13	79	88.431	Mus_caroli
ENSODEG00000005178	ZC3H13	53	82.048	ENSMUSG00000022000	Zc3h13	50	81.881	Mus_musculus
ENSODEG00000005178	ZC3H13	53	81.933	MGP_PahariEiJ_G0030530	Zc3h13	50	81.766	Mus_pahari
ENSODEG00000005178	ZC3H13	53	81.933	MGP_SPRETEiJ_G0020407	Zc3h13	51	81.766	Mus_spretus
ENSODEG00000005178	ZC3H13	53	85.092	ENSMPUG00000001602	ZC3H13	52	85.419	Mustela_putorius_furo
ENSODEG00000005178	ZC3H13	53	83.257	ENSMLUG00000006920	ZC3H13	53	83.638	Myotis_lucifugus
ENSODEG00000005178	ZC3H13	53	82.446	ENSNLEG00000002498	ZC3H13	53	85.051	Nomascus_leucogenys
ENSODEG00000005178	ZC3H13	53	87.156	ENSOCUG00000015173	ZC3H13	53	87.156	Oryctolagus_cuniculus
ENSODEG00000005178	ZC3H13	53	84.005	ENSOGAG00000012032	ZC3H13	52	84.138	Otolemur_garnettii
ENSODEG00000005178	ZC3H13	52	82.462	ENSOARG00000007790	ZC3H13	52	82.468	Ovis_aries
ENSODEG00000005178	ZC3H13	53	84.845	ENSPPRG00000005440	ZC3H13	52	86.223	Panthera_pardus
ENSODEG00000005178	ZC3H13	53	83.982	ENSPTIG00000014867	ZC3H13	53	84.703	Panthera_tigris_altaica
ENSODEG00000005178	ZC3H13	78	95.547	ENSPCAG00000001146	ZC3H13	77	95.547	Procavia_capensis
ENSODEG00000005178	ZC3H13	66	96.757	ENSPVAG00000012353	ZC3H13	69	84.639	Pteropus_vampyrus
ENSODEG00000005178	ZC3H13	53	82.786	ENSRBIG00000010463	ZC3H13	53	85.051	Rhinopithecus_bieti
ENSODEG00000005178	ZC3H13	50	93.785	ENSSARG00000007106	ZC3H13	50	93.785	Sorex_araneus
ENSODEG00000005178	ZC3H13	53	84.740	ENSSSCG00000009414	ZC3H13	52	84.740	Sus_scrofa
ENSODEG00000005178	ZC3H13	53	82.664	ENSUMAG00000016220	ZC3H13	52	83.028	Ursus_maritimus
ENSODEG00000005178	ZC3H13	84	90.000	ENSVPAG00000005179	ZC3H13	84	90.000	Vicugna_pacos
ENSODEG00000005178	ZC3H13	53	84.386	ENSVVUG00000028395	ZC3H13	54	85.993	Vulpes_vulpes
ENSODEG00000005178	ZC3H13	93	63.014	ENSXETG00000014637	zc3h13	97	60.420	Xenopus_tropicalis