EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000005226 (Gene tree)
Gene ID: 101567238
Gene Symbol: -
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 426801 bases
Position: chrJH651596.1:6527725-6954525
Accession: 101567238
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000007008	CMS1	PF14617.6	8.9e-32	1	1
ENSODEP00000007008	DEAD	PF00270.29	5.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000007115	-	840	XM_004636582	ENSODEP00000007008	279 (aa)	XP_004636639	UPI000C9F1705

Gene Model

Click here to download ENSODEG00000005226's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000005226's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000005226	-	100	74.910	ENSODEG00000009446	-	100	74.910
ENSODEG00000005226	-	100	84.229	ENSODEG00000001853	-	100	84.229
ENSODEG00000005226	-	100	88.256	ENSODEG00000003558	-	100	88.256

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000005226	-	100	85.305	ENSG00000184220	CMSS1	99	88.889	Homo_sapiens
ENSODEG00000005226	-	72	64.851	ENSAPOG00000010604	cmss1	81	64.500	Acanthochromis_polyacanthus
ENSODEG00000005226	-	92	87.645	ENSAMEG00000004092	CMSS1	100	87.645	Ailuropoda_melanoleuca
ENSODEG00000005226	-	72	55.446	ENSACIG00000021854	cmss1	74	55.000	Amphilophus_citrinellus
ENSODEG00000005226	-	100	52.041	ENSAOCG00000013361	cmss1	100	54.576	Amphiprion_ocellaris
ENSODEG00000005226	-	72	64.851	ENSAPEG00000005829	cmss1	100	52.881	Amphiprion_percula
ENSODEG00000005226	-	100	54.671	ENSATEG00000008209	cmss1	100	54.209	Anabas_testudineus
ENSODEG00000005226	-	82	68.696	ENSAPLG00000010542	CMSS1	100	68.696	Anas_platyrhynchos
ENSODEG00000005226	-	92	61.654	ENSACAG00000011065	CMSS1	97	61.278	Anolis_carolinensis
ENSODEG00000005226	-	100	84.643	ENSANAG00000023565	CMSS1	100	84.643	Aotus_nancymaae
ENSODEG00000005226	-	100	51.546	ENSACLG00000027294	cmss1	100	51.890	Astatotilapia_calliptera
ENSODEG00000005226	-	100	46.000	ENSAMXG00000002046	cmss1	100	47.000	Astyanax_mexicanus
ENSODEG00000005226	-	100	85.305	ENSBTAG00000013663	CMSS1	100	85.305	Bos_taurus
ENSODEG00000005226	-	100	85.000	ENSCJAG00000000610	CMSS1	100	85.000	Callithrix_jacchus
ENSODEG00000005226	-	92	88.372	ENSCAFG00000009230	CMSS1	93	88.372	Canis_familiaris
ENSODEG00000005226	-	93	88.803	ENSCAFG00020009464	-	95	88.803	Canis_lupus_dingo
ENSODEG00000005226	-	78	85.253	ENSCAFG00020024156	-	71	83.186	Canis_lupus_dingo
ENSODEG00000005226	-	92	85.603	ENSCHIG00000013003	CMSS1	93	85.603	Capra_hircus
ENSODEG00000005226	-	96	81.181	ENSTSYG00000009266	CMSS1	99	83.721	Carlito_syrichta
ENSODEG00000005226	-	80	74.554	ENSCAPG00000013584	CMSS1	100	74.107	Cavia_aperea
ENSODEG00000005226	-	100	90.681	ENSCPOG00000014680	CMSS1	100	90.681	Cavia_porcellus
ENSODEG00000005226	-	100	86.071	ENSCCAG00000034685	CMSS1	100	86.071	Cebus_capucinus
ENSODEG00000005226	-	100	86.022	ENSCATG00000031980	CMSS1	100	86.022	Cercocebus_atys
ENSODEG00000005226	-	82	92.576	ENSCLAG00000011241	CMSS1	98	92.576	Chinchilla_lanigera
ENSODEG00000005226	-	87	88.477	ENSCSAG00000006024	CMSS1	99	88.477	Chlorocebus_sabaeus
ENSODEG00000005226	-	100	66.667	ENSCHOG00000012098	CMSS1	100	66.667	Choloepus_hoffmanni
ENSODEG00000005226	-	70	40.500	ENSCING00000014848	-	96	43.017	Ciona_intestinalis
ENSODEG00000005226	-	100	86.022	ENSCANG00000031337	CMSS1	100	86.022	Colobus_angolensis_palliatus
ENSODEG00000005226	-	100	78.853	ENSCGRG00001014305	Cmss1	100	78.853	Cricetulus_griseus_chok1gshd
ENSODEG00000005226	-	92	79.688	ENSCGRG00000006722	Cmss1	99	79.688	Cricetulus_griseus_crigri
ENSODEG00000005226	-	100	51.852	ENSCSEG00000004958	cmss1	100	52.703	Cynoglossus_semilaevis
ENSODEG00000005226	-	100	51.736	ENSCVAG00000005039	cmss1	100	52.431	Cyprinodon_variegatus
ENSODEG00000005226	-	100	46.801	ENSDARG00000112579	cmss1	100	47.279	Danio_rerio
ENSODEG00000005226	-	94	82.824	ENSDNOG00000040418	CMSS1	92	83.398	Dasypus_novemcinctus
ENSODEG00000005226	-	100	84.588	ENSDORG00000010461	Cmss1	100	84.588	Dipodomys_ordii
ENSODEG00000005226	-	96	78.067	ENSEASG00005010966	CMSS1	99	88.584	Equus_asinus_asinus
ENSODEG00000005226	-	92	85.992	ENSECAG00000015662	CMSS1	99	88.496	Equus_caballus
ENSODEG00000005226	-	100	55.914	ENSEEUG00000007624	-	100	55.197	Erinaceus_europaeus
ENSODEG00000005226	-	100	48.867	ENSELUG00000019459	cmss1	100	51.667	Esox_lucius
ENSODEG00000005226	-	100	89.247	ENSFCAG00000044577	CMSS1	100	89.247	Felis_catus
ENSODEG00000005226	-	85	65.401	ENSFALG00000005816	CMSS1	100	65.401	Ficedula_albicollis
ENSODEG00000005226	-	82	91.228	ENSFDAG00000012577	CMSS1	100	91.228	Fukomys_damarensis
ENSODEG00000005226	-	81	60.606	ENSFHEG00000012008	cmss1	95	60.606	Fundulus_heteroclitus
ENSODEG00000005226	-	99	48.814	ENSGMOG00000016729	cmss1	100	52.098	Gadus_morhua
ENSODEG00000005226	-	93	63.498	ENSGALG00000015267	CMSS1	100	63.602	Gallus_gallus
ENSODEG00000005226	-	74	62.621	ENSGAFG00000021217	cmss1	76	62.000	Gambusia_affinis
ENSODEG00000005226	-	99	50.179	ENSGACG00000002798	cmss1	100	50.179	Gasterosteus_aculeatus
ENSODEG00000005226	-	87	68.595	ENSGAGG00000019861	CMSS1	94	68.595	Gopherus_agassizii
ENSODEG00000005226	-	93	85.878	ENSGGOG00000014125	CMSS1	99	86.047	Gorilla_gorilla
ENSODEG00000005226	-	100	50.685	ENSHBUG00000008431	cmss1	100	51.379	Haplochromis_burtoni
ENSODEG00000005226	-	91	88.538	ENSHGLG00000019481	CMSS1	100	88.538	Heterocephalus_glaber_female
ENSODEG00000005226	-	92	88.716	ENSHGLG00100010314	CMSS1	100	88.716	Heterocephalus_glaber_male
ENSODEG00000005226	-	100	51.525	ENSHCOG00000003222	cmss1	100	53.667	Hippocampus_comes
ENSODEG00000005226	-	100	50.685	ENSIPUG00000011591	cmss1	100	50.000	Ictalurus_punctatus
ENSODEG00000005226	-	100	86.022	ENSSTOG00000019366	CMSS1	100	86.022	Ictidomys_tridecemlineatus
ENSODEG00000005226	-	100	82.796	ENSJJAG00000014894	Cmss1	100	82.796	Jaculus_jaculus
ENSODEG00000005226	-	72	56.436	ENSKMAG00000002390	cmss1	80	56.000	Kryptolebias_marmoratus
ENSODEG00000005226	-	72	59.113	ENSLBEG00000006298	cmss1	82	58.706	Labrus_bergylta
ENSODEG00000005226	-	82	66.957	ENSLACG00000009293	CMSS1	100	66.957	Latimeria_chalumnae
ENSODEG00000005226	-	100	52.431	ENSLOCG00000009391	cmss1	100	52.778	Lepisosteus_oculatus
ENSODEG00000005226	-	82	89.035	ENSLAFG00000017509	CMSS1	100	89.035	Loxodonta_africana
ENSODEG00000005226	-	100	86.022	ENSMFAG00000045006	CMSS1	100	86.022	Macaca_fascicularis
ENSODEG00000005226	-	100	85.663	ENSMMUG00000002939	CMSS1	98	88.636	Macaca_mulatta
ENSODEG00000005226	-	100	85.663	ENSMNEG00000031315	CMSS1	100	85.663	Macaca_nemestrina
ENSODEG00000005226	-	100	86.022	ENSMLEG00000033660	CMSS1	100	86.022	Mandrillus_leucophaeus
ENSODEG00000005226	-	100	54.082	ENSMAMG00000017176	cmss1	100	54.949	Mastacembelus_armatus
ENSODEG00000005226	-	100	51.546	ENSMZEG00005021886	cmss1	100	51.890	Maylandia_zebra
ENSODEG00000005226	-	82	67.982	ENSMGAG00000014360	CMSS1	100	67.982	Meleagris_gallopavo
ENSODEG00000005226	-	100	59.498	ENSMAUG00000020609	Cmss1	100	59.498	Mesocricetus_auratus
ENSODEG00000005226	-	100	85.663	ENSMICG00000048977	CMSS1	100	85.663	Microcebus_murinus
ENSODEG00000005226	-	100	79.570	ENSMOCG00000021937	Cmss1	100	79.570	Microtus_ochrogaster
ENSODEG00000005226	-	72	63.366	ENSMMOG00000019794	cmss1	83	63.000	Mola_mola
ENSODEG00000005226	-	94	71.374	ENSMODG00000002275	CMSS1	98	71.374	Monodelphis_domestica
ENSODEG00000005226	-	100	54.296	ENSMALG00000004250	cmss1	100	53.378	Monopterus_albus
ENSODEG00000005226	-	100	80.714	MGP_CAROLIEiJ_G0020824	Cmss1	100	80.714	Mus_caroli
ENSODEG00000005226	-	100	81.786	ENSMUSG00000022748	Cmss1	100	81.786	Mus_musculus
ENSODEG00000005226	-	100	80.357	MGP_PahariEiJ_G0016524	Cmss1	100	80.357	Mus_pahari
ENSODEG00000005226	-	100	81.786	MGP_SPRETEiJ_G0021724	Cmss1	100	81.786	Mus_spretus
ENSODEG00000005226	-	87	91.736	ENSMPUG00000011324	CMSS1	99	89.105	Mustela_putorius_furo
ENSODEG00000005226	-	92	85.385	ENSMLUG00000001131	CMSS1	99	85.385	Myotis_lucifugus
ENSODEG00000005226	-	100	81.362	ENSNGAG00000020316	Cmss1	100	81.362	Nannospalax_galili
ENSODEG00000005226	-	100	50.505	ENSNBRG00000003095	cmss1	100	51.546	Neolamprologus_brichardi
ENSODEG00000005226	-	100	87.097	ENSNLEG00000034172	CMSS1	100	87.097	Nomascus_leucogenys
ENSODEG00000005226	-	82	64.474	ENSMEUG00000014505	CMSS1	100	64.474	Notamacropus_eugenii
ENSODEG00000005226	-	100	86.380	ENSOPRG00000002986	CMSS1	100	86.380	Ochotona_princeps
ENSODEG00000005226	-	72	61.386	ENSONIG00000006678	cmss1	77	61.000	Oreochromis_niloticus
ENSODEG00000005226	-	92	70.385	ENSOANG00000007529	CMSS1	100	74.249	Ornithorhynchus_anatinus
ENSODEG00000005226	-	92	85.659	ENSOCUG00000025366	CMSS1	93	85.659	Oryctolagus_cuniculus
ENSODEG00000005226	-	100	55.903	ENSORLG00000020340	cmss1	100	57.692	Oryzias_latipes
ENSODEG00000005226	-	82	55.022	ENSORLG00020012235	cmss1	85	58.000	Oryzias_latipes_hni
ENSODEG00000005226	-	72	58.416	ENSORLG00015015551	cmss1	75	58.000	Oryzias_latipes_hsok
ENSODEG00000005226	-	100	54.138	ENSOMEG00000012555	cmss1	100	55.326	Oryzias_melastigma
ENSODEG00000005226	-	82	88.596	ENSOGAG00000002045	CMSS1	100	88.596	Otolemur_garnettii
ENSODEG00000005226	-	92	86.047	ENSOARG00000017899	CMSS1	89	86.047	Ovis_aries
ENSODEG00000005226	-	92	85.659	ENSPPAG00000038515	CMSS1	95	85.659	Pan_paniscus
ENSODEG00000005226	-	100	89.606	ENSPPRG00000016767	CMSS1	100	89.606	Panthera_pardus
ENSODEG00000005226	-	100	88.889	ENSPTIG00000018274	CMSS1	100	88.889	Panthera_tigris_altaica
ENSODEG00000005226	-	100	84.946	ENSPTRG00000015157	CMSS1	99	87.243	Pan_troglodytes
ENSODEG00000005226	-	92	84.496	ENSPANG00000019980	CMSS1	99	84.496	Papio_anubis
ENSODEG00000005226	-	91	56.391	ENSPKIG00000012609	cmss1	97	56.604	Paramormyrops_kingsleyae
ENSODEG00000005226	-	82	72.052	ENSPSIG00000003849	CMSS1	100	72.052	Pelodiscus_sinensis
ENSODEG00000005226	-	72	61.576	ENSPMGG00000010286	cmss1	86	61.194	Periophthalmus_magnuspinnatus
ENSODEG00000005226	-	100	81.429	ENSPEMG00000016384	Cmss1	100	81.429	Peromyscus_maniculatus_bairdii
ENSODEG00000005226	-	73	53.431	ENSPMAG00000001146	cmss1	98	53.500	Petromyzon_marinus
ENSODEG00000005226	-	92	69.847	ENSPCIG00000015656	CMSS1	99	69.847	Phascolarctos_cinereus
ENSODEG00000005226	-	100	52.797	ENSPFOG00000016849	cmss1	100	53.819	Poecilia_formosa
ENSODEG00000005226	-	100	52.448	ENSPLAG00000008323	cmss1	100	53.472	Poecilia_latipinna
ENSODEG00000005226	-	100	53.819	ENSPMEG00000021020	cmss1	100	54.167	Poecilia_mexicana
ENSODEG00000005226	-	83	58.898	ENSPREG00000007618	cmss1	68	62.500	Poecilia_reticulata
ENSODEG00000005226	-	100	84.946	ENSPPYG00000013606	CMSS1	100	84.946	Pongo_abelii
ENSODEG00000005226	-	100	86.022	ENSPCOG00000020035	CMSS1	100	86.022	Propithecus_coquereli
ENSODEG00000005226	-	100	74.910	ENSPVAG00000017031	CMSS1	100	74.910	Pteropus_vampyrus
ENSODEG00000005226	-	91	52.830	ENSPNYG00000013428	cmss1	97	53.208	Pundamilia_nyererei
ENSODEG00000005226	-	100	49.662	ENSPNAG00000007912	cmss1	100	49.662	Pygocentrus_nattereri
ENSODEG00000005226	-	92	80.156	ENSRNOG00000027888	Cmss1	99	80.156	Rattus_norvegicus
ENSODEG00000005226	-	100	86.380	ENSRBIG00000037931	CMSS1	100	86.380	Rhinopithecus_bieti
ENSODEG00000005226	-	100	86.380	ENSRROG00000042910	CMSS1	100	86.380	Rhinopithecus_roxellana
ENSODEG00000005226	-	100	80.357	ENSSBOG00000030980	CMSS1	99	85.328	Saimiri_boliviensis_boliviensis
ENSODEG00000005226	-	89	71.429	ENSSHAG00000009321	CMSS1	99	71.429	Sarcophilus_harrisii
ENSODEG00000005226	-	100	54.392	ENSSFOG00015001509	cmss1	100	54.795	Scleropages_formosus
ENSODEG00000005226	-	100	54.949	ENSSMAG00000001653	cmss1	100	54.452	Scophthalmus_maximus
ENSODEG00000005226	-	100	54.514	ENSSDUG00000007719	cmss1	100	55.017	Seriola_dumerili
ENSODEG00000005226	-	74	65.534	ENSSLDG00000012300	cmss1	80	59.585	Seriola_lalandi_dorsalis
ENSODEG00000005226	-	100	70.357	ENSSARG00000003584	CMSS1	100	70.357	Sorex_araneus
ENSODEG00000005226	-	81	70.796	ENSSPUG00000003865	CMSS1	100	70.796	Sphenodon_punctatus
ENSODEG00000005226	-	93	55.094	ENSSPAG00000019182	cmss1	82	54.275	Stegastes_partitus
ENSODEG00000005226	-	100	87.455	ENSSSCG00000011970	CMSS1	100	87.455	Sus_scrofa
ENSODEG00000005226	-	82	66.376	ENSTGUG00000013635	CMSS1	100	66.376	Taeniopygia_guttata
ENSODEG00000005226	-	100	52.448	ENSTRUG00000015265	cmss1	100	51.773	Takifugu_rubripes
ENSODEG00000005226	-	72	55.941	ENSTNIG00000002880	cmss1	86	51.261	Tetraodon_nigroviridis
ENSODEG00000005226	-	100	59.643	ENSTBEG00000016722	CMSS1	100	59.643	Tupaia_belangeri
ENSODEG00000005226	-	100	84.946	ENSTTRG00000001562	CMSS1	100	84.946	Tursiops_truncatus
ENSODEG00000005226	-	97	85.714	ENSUAMG00000024209	CMSS1	100	92.825	Ursus_americanus
ENSODEG00000005226	-	93	88.803	ENSUMAG00000001983	CMSS1	99	89.105	Ursus_maritimus
ENSODEG00000005226	-	100	65.950	ENSVPAG00000000263	CMSS1	100	65.950	Vicugna_pacos
ENSODEG00000005226	-	88	89.024	ENSVVUG00000021647	-	100	89.024	Vulpes_vulpes
ENSODEG00000005226	-	78	90.323	ENSVVUG00000007776	-	85	90.323	Vulpes_vulpes
ENSODEG00000005226	-	100	56.890	ENSXETG00000011858	cmss1	100	56.890	Xenopus_tropicalis
ENSODEG00000005226	-	74	63.107	ENSXCOG00000018724	cmss1	68	62.500	Xiphophorus_couchianus
ENSODEG00000005226	-	74	63.107	ENSXMAG00000011243	cmss1	75	62.500	Xiphophorus_maculatus