EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000005238 (Gene tree)
Gene ID: 101592994
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 62331 bases
Position: chrJH651642.1:4061876-4124206
Accession: 101592994
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000007024	SpoU_methylase	PF00588.19	4.7e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000007131	TARBP1-201	4614	XM_004640862	ENSODEP00000007024	1537 (aa)	-	-

Gene Model

Click here to download ENSODEG00000005238's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000005238's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000005238	TARBP1	99	74.074	ENSG00000059588	TARBP1	99	73.564	Homo_sapiens
ENSODEG00000005238	TARBP1	97	42.912	ENSAPOG00000016419	si:dkey-85a20.4	85	44.615	Acanthochromis_polyacanthus
ENSODEG00000005238	TARBP1	88	78.357	ENSAMEG00000003359	TARBP1	99	78.136	Ailuropoda_melanoleuca
ENSODEG00000005238	TARBP1	97	43.051	ENSATEG00000020266	si:dkey-85a20.4	90	42.988	Anabas_testudineus
ENSODEG00000005238	TARBP1	88	63.810	ENSAPLG00000007666	TARBP1	99	64.580	Anas_platyrhynchos
ENSODEG00000005238	TARBP1	99	56.258	ENSACAG00000001142	TARBP1	98	56.020	Anolis_carolinensis
ENSODEG00000005238	TARBP1	99	72.772	ENSBTAG00000004517	TARBP1	99	77.087	Bos_taurus
ENSODEG00000005238	TARBP1	99	72.274	ENSCJAG00000018155	TARBP1	99	72.761	Callithrix_jacchus
ENSODEG00000005238	TARBP1	92	77.320	ENSCAFG00000011533	TARBP1	99	77.581	Canis_familiaris
ENSODEG00000005238	TARBP1	99	73.259	ENSCAFG00020027141	TARBP1	99	73.889	Canis_lupus_dingo
ENSODEG00000005238	TARBP1	99	71.923	ENSCHIG00000011437	TARBP1	99	71.367	Capra_hircus
ENSODEG00000005238	TARBP1	85	77.965	ENSTSYG00000010382	TARBP1	97	77.888	Carlito_syrichta
ENSODEG00000005238	TARBP1	83	78.292	ENSCAPG00000010831	TARBP1	100	78.292	Cavia_aperea
ENSODEG00000005238	TARBP1	100	85.804	ENSCPOG00000013995	TARBP1	100	85.804	Cavia_porcellus
ENSODEG00000005238	TARBP1	99	73.379	ENSCCAG00000037278	TARBP1	99	73.626	Cebus_capucinus
ENSODEG00000005238	TARBP1	99	73.070	ENSCATG00000011754	TARBP1	99	73.317	Cercocebus_atys
ENSODEG00000005238	TARBP1	88	90.575	ENSCLAG00000003655	TARBP1	99	90.575	Chinchilla_lanigera
ENSODEG00000005238	TARBP1	83	78.332	ENSCSAG00000010100	TARBP1	99	78.254	Chlorocebus_sabaeus
ENSODEG00000005238	TARBP1	94	62.685	ENSCPBG00000005587	TARBP1	98	62.592	Chrysemys_picta_bellii
ENSODEG00000005238	TARBP1	88	78.645	ENSCANG00000034343	TARBP1	99	78.571	Colobus_angolensis_palliatus
ENSODEG00000005238	TARBP1	99	73.688	ENSCGRG00001016690	Tarbp1	99	73.561	Cricetulus_griseus_chok1gshd
ENSODEG00000005238	TARBP1	99	76.161	ENSCGRG00000016893	Tarbp1	97	76.707	Cricetulus_griseus_crigri
ENSODEG00000005238	TARBP1	87	48.663	ENSCSEG00000005255	si:dkey-85a20.4	93	48.797	Cynoglossus_semilaevis
ENSODEG00000005238	TARBP1	89	45.389	ENSDARG00000079055	si:dkey-85a20.4	99	55.190	Danio_rerio
ENSODEG00000005238	TARBP1	99	74.748	ENSDNOG00000008637	TARBP1	92	73.705	Dasypus_novemcinctus
ENSODEG00000005238	TARBP1	84	73.765	ENSDORG00000007984	Tarbp1	100	73.900	Dipodomys_ordii
ENSODEG00000005238	TARBP1	99	74.984	ENSEASG00005000252	TARBP1	99	74.783	Equus_asinus_asinus
ENSODEG00000005238	TARBP1	99	74.877	ENSECAG00000023673	TARBP1	99	76.295	Equus_caballus
ENSODEG00000005238	TARBP1	89	44.145	ENSELUG00000012193	si:dkey-85a20.4	86	44.216	Esox_lucius
ENSODEG00000005238	TARBP1	99	70.117	ENSFCAG00000014183	TARBP1	92	73.586	Felis_catus
ENSODEG00000005238	TARBP1	84	65.261	ENSFALG00000013565	TARBP1	99	65.241	Ficedula_albicollis
ENSODEG00000005238	TARBP1	83	84.239	ENSFDAG00000001308	TARBP1	100	84.239	Fukomys_damarensis
ENSODEG00000005238	TARBP1	90	37.994	ENSFHEG00000007565	si:dkey-85a20.4	77	55.402	Fundulus_heteroclitus
ENSODEG00000005238	TARBP1	88	42.888	ENSGMOG00000004549	si:dkey-85a20.4	99	42.960	Gadus_morhua
ENSODEG00000005238	TARBP1	99	57.036	ENSGALG00000011000	TARBP1	99	56.893	Gallus_gallus
ENSODEG00000005238	TARBP1	88	44.316	ENSGAFG00000007387	si:dkey-85a20.4	83	44.243	Gambusia_affinis
ENSODEG00000005238	TARBP1	88	44.629	ENSGACG00000005865	si:dkey-85a20.4	99	44.366	Gasterosteus_aculeatus
ENSODEG00000005238	TARBP1	99	64.099	ENSGAGG00000012102	TARBP1	99	64.464	Gopherus_agassizii
ENSODEG00000005238	TARBP1	89	76.934	ENSGGOG00000022879	TARBP1	99	77.007	Gorilla_gorilla
ENSODEG00000005238	TARBP1	90	44.884	ENSHBUG00000008877	si:dkey-85a20.4	85	44.742	Haplochromis_burtoni
ENSODEG00000005238	TARBP1	100	85.678	ENSHGLG00000011592	TARBP1	100	85.867	Heterocephalus_glaber_female
ENSODEG00000005238	TARBP1	96	91.304	ENSHGLG00100015169	TARBP1	100	91.304	Heterocephalus_glaber_male
ENSODEG00000005238	TARBP1	97	40.936	ENSIPUG00000005249	si:dkey-85a20.4	84	42.767	Ictalurus_punctatus
ENSODEG00000005238	TARBP1	92	74.405	ENSSTOG00000032291	TARBP1	99	79.545	Ictidomys_tridecemlineatus
ENSODEG00000005238	TARBP1	97	72.603	ENSJJAG00000017840	Tarbp1	99	72.603	Jaculus_jaculus
ENSODEG00000005238	TARBP1	73	47.390	ENSKMAG00000017546	si:dkey-85a20.4	77	47.390	Kryptolebias_marmoratus
ENSODEG00000005238	TARBP1	69	50.395	ENSLBEG00000012132	si:dkey-85a20.4	83	50.526	Labrus_bergylta
ENSODEG00000005238	TARBP1	95	51.671	ENSLACG00000004337	TARBP1	90	51.680	Latimeria_chalumnae
ENSODEG00000005238	TARBP1	98	47.005	ENSLOCG00000016214	si:dkey-85a20.4	93	46.719	Lepisosteus_oculatus
ENSODEG00000005238	TARBP1	97	73.399	ENSLAFG00000011394	TARBP1	96	73.893	Loxodonta_africana
ENSODEG00000005238	TARBP1	99	72.267	ENSMFAG00000041068	TARBP1	99	72.354	Macaca_fascicularis
ENSODEG00000005238	TARBP1	99	71.191	ENSMMUG00000021703	TARBP1	99	71.067	Macaca_mulatta
ENSODEG00000005238	TARBP1	99	73.379	ENSMNEG00000045002	TARBP1	99	73.255	Macaca_nemestrina
ENSODEG00000005238	TARBP1	88	78.624	ENSMLEG00000044182	TARBP1	99	78.550	Mandrillus_leucophaeus
ENSODEG00000005238	TARBP1	88	45.029	ENSMAMG00000021760	si:dkey-85a20.4	84	44.825	Mastacembelus_armatus
ENSODEG00000005238	TARBP1	90	44.813	ENSMZEG00005005751	si:dkey-85a20.4	85	44.672	Maylandia_zebra
ENSODEG00000005238	TARBP1	100	73.043	ENSMAUG00000020968	Tarbp1	99	72.917	Mesocricetus_auratus
ENSODEG00000005238	TARBP1	99	67.183	ENSMICG00000015280	TARBP1	99	67.286	Microcebus_murinus
ENSODEG00000005238	TARBP1	100	72.521	ENSMOCG00000004128	Tarbp1	99	72.521	Microtus_ochrogaster
ENSODEG00000005238	TARBP1	89	43.284	ENSMMOG00000007795	si:dkey-85a20.4	84	43.376	Mola_mola
ENSODEG00000005238	TARBP1	99	68.078	ENSMODG00000008504	TARBP1	95	68.170	Monodelphis_domestica
ENSODEG00000005238	TARBP1	89	44.758	ENSMALG00000002916	si:dkey-85a20.4	85	44.758	Monopterus_albus
ENSODEG00000005238	TARBP1	99	71.808	MGP_CAROLIEiJ_G0031729	Tarbp1	99	71.681	Mus_caroli
ENSODEG00000005238	TARBP1	99	71.745	ENSMUSG00000090290	Tarbp1	99	71.618	Mus_musculus
ENSODEG00000005238	TARBP1	99	71.465	MGP_PahariEiJ_G0023326	Tarbp1	99	71.338	Mus_pahari
ENSODEG00000005238	TARBP1	99	71.664	MGP_SPRETEiJ_G0032846	Tarbp1	99	71.537	Mus_spretus
ENSODEG00000005238	TARBP1	80	77.984	ENSMPUG00000002802	TARBP1	99	77.742	Mustela_putorius_furo
ENSODEG00000005238	TARBP1	88	71.741	ENSMLUG00000002414	TARBP1	99	71.939	Myotis_lucifugus
ENSODEG00000005238	TARBP1	99	74.198	ENSNLEG00000002518	TARBP1	99	73.626	Nomascus_leucogenys
ENSODEG00000005238	TARBP1	66	71.702	ENSMEUG00000011370	-	65	71.702	Notamacropus_eugenii
ENSODEG00000005238	TARBP1	74	78.383	ENSOPRG00000013822	TARBP1	71	78.383	Ochotona_princeps
ENSODEG00000005238	TARBP1	88	45.083	ENSONIG00000009789	si:dkey-85a20.4	99	44.728	Oreochromis_niloticus
ENSODEG00000005238	TARBP1	99	73.639	ENSOCUG00000017418	TARBP1	99	73.704	Oryctolagus_cuniculus
ENSODEG00000005238	TARBP1	98	40.941	ENSORLG00000010529	si:dkey-85a20.4	90	41.391	Oryzias_latipes
ENSODEG00000005238	TARBP1	98	41.131	ENSORLG00020019264	si:dkey-85a20.4	90	41.584	Oryzias_latipes_hni
ENSODEG00000005238	TARBP1	98	40.862	ENSORLG00015003276	si:dkey-85a20.4	90	41.491	Oryzias_latipes_hsok
ENSODEG00000005238	TARBP1	99	76.250	ENSOGAG00000002379	TARBP1	99	70.810	Otolemur_garnettii
ENSODEG00000005238	TARBP1	99	72.668	ENSOARG00000003434	TARBP1	99	73.510	Ovis_aries
ENSODEG00000005238	TARBP1	88	79.133	ENSPPAG00000028097	TARBP1	99	79.060	Pan_paniscus
ENSODEG00000005238	TARBP1	99	70.978	ENSPPRG00000013561	TARBP1	99	70.721	Panthera_pardus
ENSODEG00000005238	TARBP1	87	78.151	ENSPTIG00000009281	TARBP1	99	78.151	Panthera_tigris_altaica
ENSODEG00000005238	TARBP1	99	74.168	ENSPTRG00000002124	TARBP1	99	72.800	Pan_troglodytes
ENSODEG00000005238	TARBP1	99	73.379	ENSPANG00000021933	TARBP1	99	73.564	Papio_anubis
ENSODEG00000005238	TARBP1	90	46.521	ENSPKIG00000016716	si:dkey-85a20.4	85	46.414	Paramormyrops_kingsleyae
ENSODEG00000005238	TARBP1	83	66.926	ENSPSIG00000010699	TARBP1	99	66.745	Pelodiscus_sinensis
ENSODEG00000005238	TARBP1	99	74.074	ENSPEMG00000006888	Tarbp1	99	74.009	Peromyscus_maniculatus_bairdii
ENSODEG00000005238	TARBP1	91	80.882	ENSPCIG00000029710	TARBP1	99	80.882	Phascolarctos_cinereus
ENSODEG00000005238	TARBP1	89	43.661	ENSPFOG00000013020	si:dkey-85a20.4	99	43.590	Poecilia_formosa
ENSODEG00000005238	TARBP1	89	43.994	ENSPLAG00000006044	si:dkey-85a20.4	85	43.852	Poecilia_latipinna
ENSODEG00000005238	TARBP1	89	43.852	ENSPMEG00000017857	si:dkey-85a20.4	85	43.710	Poecilia_mexicana
ENSODEG00000005238	TARBP1	89	44.168	ENSPREG00000022753	si:dkey-85a20.4	85	44.168	Poecilia_reticulata
ENSODEG00000005238	TARBP1	90	77.306	ENSPPYG00000000102	TARBP1	99	77.215	Pongo_abelii
ENSODEG00000005238	TARBP1	82	87.248	ENSPCAG00000004808	TARBP1	82	87.248	Procavia_capensis
ENSODEG00000005238	TARBP1	99	70.996	ENSPCOG00000005666	TARBP1	99	72.294	Propithecus_coquereli
ENSODEG00000005238	TARBP1	99	62.065	ENSPVAG00000014798	TARBP1	99	62.251	Pteropus_vampyrus
ENSODEG00000005238	TARBP1	90	44.034	ENSPNYG00000019135	si:dkey-85a20.4	85	44.034	Pundamilia_nyererei
ENSODEG00000005238	TARBP1	99	67.573	ENSRNOG00000053574	Tarbp1	99	67.446	Rattus_norvegicus
ENSODEG00000005238	TARBP1	99	68.758	ENSRBIG00000043362	TARBP1	99	68.564	Rhinopithecus_bieti
ENSODEG00000005238	TARBP1	99	75.432	ENSRROG00000029527	TARBP1	99	75.752	Rhinopithecus_roxellana
ENSODEG00000005238	TARBP1	91	77.942	ENSSBOG00000034503	TARBP1	99	84.091	Saimiri_boliviensis_boliviensis
ENSODEG00000005238	TARBP1	87	70.867	ENSSHAG00000000013	TARBP1	99	70.719	Sarcophilus_harrisii
ENSODEG00000005238	TARBP1	99	42.225	ENSSFOG00015002660	si:dkey-85a20.4	97	45.880	Scleropages_formosus
ENSODEG00000005238	TARBP1	96	43.950	ENSSMAG00000007081	si:dkey-85a20.4	90	43.746	Scophthalmus_maximus
ENSODEG00000005238	TARBP1	98	41.112	ENSSDUG00000023566	si:dkey-85a20.4	85	43.581	Seriola_dumerili
ENSODEG00000005238	TARBP1	89	45.067	ENSSLDG00000020200	si:dkey-85a20.4	85	45.248	Seriola_lalandi_dorsalis
ENSODEG00000005238	TARBP1	89	75.982	ENSSARG00000012207	TARBP1	89	75.982	Sorex_araneus
ENSODEG00000005238	TARBP1	99	58.728	ENSSPUG00000015364	TARBP1	99	59.051	Sphenodon_punctatus
ENSODEG00000005238	TARBP1	88	45.115	ENSSPAG00000007213	si:dkey-85a20.4	83	44.818	Stegastes_partitus
ENSODEG00000005238	TARBP1	96	75.651	ENSSSCG00000010160	TARBP1	99	75.790	Sus_scrofa
ENSODEG00000005238	TARBP1	84	64.939	ENSTGUG00000010214	TARBP1	100	64.939	Taeniopygia_guttata
ENSODEG00000005238	TARBP1	98	39.606	ENSTNIG00000016586	si:dkey-85a20.4	99	44.461	Tetraodon_nigroviridis
ENSODEG00000005238	TARBP1	89	78.481	ENSTTRG00000008707	TARBP1	95	74.312	Tursiops_truncatus
ENSODEG00000005238	TARBP1	86	77.903	ENSUMAG00000006730	TARBP1	99	77.677	Ursus_maritimus
ENSODEG00000005238	TARBP1	83	82.000	ENSVPAG00000007665	TARBP1	80	82.000	Vicugna_pacos
ENSODEG00000005238	TARBP1	92	76.360	ENSVVUG00000007460	TARBP1	99	78.799	Vulpes_vulpes
ENSODEG00000005238	TARBP1	88	52.353	ENSXETG00000016224	tarbp1	99	52.405	Xenopus_tropicalis
ENSODEG00000005238	TARBP1	80	48.295	ENSXCOG00000011779	si:dkey-85a20.4	91	48.431	Xiphophorus_couchianus
ENSODEG00000005238	TARBP1	68	42.326	ENSXMAG00000009600	si:dkey-85a20.4	100	42.326	Xiphophorus_maculatus