EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000006064 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 660 bases
Position: chrJH651653.1:7521541-7522200
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000008131	Smg4_UPF3	PF03467.15	6.7e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000008254	-	597	-	ENSODEP00000008131	198 (aa)	-	-

Gene Model

Click here to download ENSODEG00000006064's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000006064's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000006064	-	86	50.000	ENSODEG00000009176	-	69	50.000
ENSODEG00000006064	-	100	67.580	ENSODEG00000000596	-	100	67.580
ENSODEG00000006064	-	98	61.086	ENSODEG00000007164	-	95	58.824
ENSODEG00000006064	-	94	73.077	ENSODEG00000002186	-	51	73.272

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000006064	-	98	71.296	ENSG00000125351	UPF3B	99	71.963	Homo_sapiens
ENSODEG00000006064	-	90	56.425	ENSACIG00000020468	upf3a	69	60.194	Amphilophus_citrinellus
ENSODEG00000006064	-	86	67.222	ENSANAG00000033169	-	75	61.765	Aotus_nancymaae
ENSODEG00000006064	-	94	72.596	ENSANAG00000021894	-	97	72.596	Aotus_nancymaae
ENSODEG00000006064	-	94	66.827	ENSANAG00000025598	-	67	61.751	Aotus_nancymaae
ENSODEG00000006064	-	89	55.676	ENSAMXG00000000199	upf3b	67	54.412	Astyanax_mexicanus
ENSODEG00000006064	-	69	59.854	ENSBTAG00000047365	-	62	59.854	Bos_taurus
ENSODEG00000006064	-	94	72.596	ENSBTAG00000035615	UPF3B	71	72.811	Bos_taurus
ENSODEG00000006064	-	94	72.115	ENSCJAG00000004975	UPF3B	97	72.115	Callithrix_jacchus
ENSODEG00000006064	-	94	72.115	ENSCHIG00000018011	-	71	72.350	Capra_hircus
ENSODEG00000006064	-	94	72.596	ENSTSYG00000014690	UPF3B	96	66.355	Carlito_syrichta
ENSODEG00000006064	-	89	62.626	ENSCCAG00000029813	-	73	60.094	Cebus_capucinus
ENSODEG00000006064	-	94	54.839	ENSCCAG00000021964	-	63	54.271	Cebus_capucinus
ENSODEG00000006064	-	94	73.077	ENSCATG00000017506	UPF3B	97	73.077	Cercocebus_atys
ENSODEG00000006064	-	53	57.143	ENSCPBG00000022854	-	80	57.143	Chrysemys_picta_bellii
ENSODEG00000006064	-	85	36.310	ENSCING00000008396	-	93	39.597	Ciona_intestinalis
ENSODEG00000006064	-	94	73.077	ENSCANG00000029220	UPF3B	68	73.272	Colobus_angolensis_palliatus
ENSODEG00000006064	-	94	66.827	ENSCGRG00001013643	-	59	67.281	Cricetulus_griseus_chok1gshd
ENSODEG00000006064	-	63	55.200	ENSFHEG00000010418	upf3a	67	55.200	Fundulus_heteroclitus
ENSODEG00000006064	-	79	57.962	ENSGMOG00000019615	upf3a	52	57.647	Gadus_morhua
ENSODEG00000006064	-	76	58.940	ENSGALG00000016815	-	72	57.792	Gallus_gallus
ENSODEG00000006064	-	79	59.236	ENSGACG00000001972	upf3a	53	58.824	Gasterosteus_aculeatus
ENSODEG00000006064	-	94	56.995	ENSGACG00000017435	upf3b	74	59.406	Gasterosteus_aculeatus
ENSODEG00000006064	-	70	62.319	ENSGAGG00000001952	UPF3A	78	62.319	Gopherus_agassizii
ENSODEG00000006064	-	94	73.077	ENSGGOG00000023995	UPF3B	80	65.605	Gorilla_gorilla
ENSODEG00000006064	-	93	64.251	ENSHGLG00000011189	-	51	64.977	Heterocephalus_glaber_female
ENSODEG00000006064	-	93	64.251	ENSHGLG00100001889	-	52	64.977	Heterocephalus_glaber_male
ENSODEG00000006064	-	77	60.526	ENSHCOG00000013985	upf3a	61	62.759	Hippocampus_comes
ENSODEG00000006064	-	77	53.595	ENSSTOG00000030282	-	76	46.237	Ictidomys_tridecemlineatus
ENSODEG00000006064	-	78	51.299	ENSJJAG00000018099	-	81	48.837	Jaculus_jaculus
ENSODEG00000006064	-	97	65.842	ENSMFAG00000045275	-	97	65.842	Macaca_fascicularis
ENSODEG00000006064	-	94	73.077	ENSMFAG00000045414	UPF3B	97	73.077	Macaca_fascicularis
ENSODEG00000006064	-	97	61.194	ENSMMUG00000046682	-	97	61.194	Macaca_mulatta
ENSODEG00000006064	-	94	73.077	ENSMMUG00000020222	UPF3B	97	73.077	Macaca_mulatta
ENSODEG00000006064	-	97	65.347	ENSMNEG00000040898	-	97	65.347	Macaca_nemestrina
ENSODEG00000006064	-	94	73.077	ENSMNEG00000039794	UPF3B	97	73.077	Macaca_nemestrina
ENSODEG00000006064	-	94	73.077	ENSMLEG00000010999	UPF3B	97	73.077	Mandrillus_leucophaeus
ENSODEG00000006064	-	94	73.077	ENSMICG00000001743	UPF3B	68	73.272	Microcebus_murinus
ENSODEG00000006064	-	56	59.091	ENSMALG00000002454	-	52	59.140	Monopterus_albus
ENSODEG00000006064	-	95	55.612	ENSNBRG00000011560	upf3b	95	56.835	Neolamprologus_brichardi
ENSODEG00000006064	-	86	81.395	ENSNLEG00000014897	UPF3B	67	73.810	Nomascus_leucogenys
ENSODEG00000006064	-	97	68.159	ENSNLEG00000027516	-	97	68.159	Nomascus_leucogenys
ENSODEG00000006064	-	77	61.842	ENSORLG00020003758	upf3b	61	55.932	Oryzias_latipes_hni
ENSODEG00000006064	-	94	73.077	ENSPPAG00000040390	UPF3B	80	65.605	Pan_paniscus
ENSODEG00000006064	-	94	72.596	ENSPTIG00000015264	UPF3B	68	72.811	Panthera_tigris_altaica
ENSODEG00000006064	-	94	73.077	ENSPTRG00000022228	UPF3B	80	65.605	Pan_troglodytes
ENSODEG00000006064	-	94	73.077	ENSPANG00000000900	UPF3B	97	73.077	Papio_anubis
ENSODEG00000006064	-	96	65.672	ENSPANG00000029350	-	96	65.672	Papio_anubis
ENSODEG00000006064	-	78	66.883	ENSPKIG00000019226	upf3b	92	53.846	Paramormyrops_kingsleyae
ENSODEG00000006064	-	94	59.067	ENSPMGG00000016067	upf3b	73	59.406	Periophthalmus_magnuspinnatus
ENSODEG00000006064	-	81	53.416	ENSPCIG00000019590	-	70	53.416	Phascolarctos_cinereus
ENSODEG00000006064	-	68	52.817	ENSPREG00000012214	upf3b	95	57.042	Poecilia_reticulata
ENSODEG00000006064	-	51	60.396	ENSPREG00000005566	upf3a	59	60.396	Poecilia_reticulata
ENSODEG00000006064	-	94	73.077	ENSPPYG00000020675	-	66	73.272	Pongo_abelii
ENSODEG00000006064	-	94	73.558	ENSPCOG00000021960	UPF3B	68	73.733	Propithecus_coquereli
ENSODEG00000006064	-	94	57.732	ENSPNAG00000021528	upf3b	68	58.128	Pygocentrus_nattereri
ENSODEG00000006064	-	94	73.077	ENSRROG00000041031	UPF3B	97	73.077	Rhinopithecus_roxellana
ENSODEG00000006064	-	94	72.115	ENSSBOG00000019740	UPF3B	99	71.635	Saimiri_boliviensis_boliviensis
ENSODEG00000006064	-	95	60.000	ENSSMAG00000012913	upf3b	66	60.396	Scophthalmus_maximus
ENSODEG00000006064	-	77	60.526	ENSSMAG00000003858	upf3a	81	55.000	Scophthalmus_maximus
ENSODEG00000006064	-	77	60.526	ENSSDUG00000009680	upf3a	66	53.704	Seriola_dumerili
ENSODEG00000006064	-	90	56.425	ENSSPAG00000007938	upf3a	72	59.873	Stegastes_partitus
ENSODEG00000006064	-	94	72.596	ENSVVUG00000011594	UPF3B	97	72.596	Vulpes_vulpes
ENSODEG00000006064	-	78	67.097	ENSXETG00000007440	upf3b	88	60.784	Xenopus_tropicalis
ENSODEG00000006064	-	77	64.706	ENSXCOG00000016586	upf3b	98	58.673	Xiphophorus_couchianus