EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000006102 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: splicing factor 1-like
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 2336 bases
Position: chrJH651622.1:973205-975540
Accession: 101562105
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000008186	KH_1	PF00013.29	5.8e-06	1	1
ENSODEP00000008186	zf-CCHC	PF00098.23	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000008309	-	1854	XM_012516481	ENSODEP00000008186	617 (aa)	XP_012371935	-

Gene Model

Click here to download ENSODEG00000006102's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000006102's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000006102	-	99	87.247	ENSAMEG00000017828	SF1	100	87.869	Ailuropoda_melanoleuca
ENSODEG00000006102	-	100	87.673	ENSANAG00000026664	-	96	97.052	Aotus_nancymaae
ENSODEG00000006102	-	85	83.242	ENSANAG00000022607	-	92	83.060	Aotus_nancymaae
ENSODEG00000006102	-	58	81.572	ENSACLG00000007633	sf1	61	77.129	Astatotilapia_calliptera
ENSODEG00000006102	-	90	93.857	ENSBTAG00000001035	SF1	92	93.857	Bos_taurus
ENSODEG00000006102	-	100	87.827	ENSCJAG00000002780	SF1	100	89.676	Callithrix_jacchus
ENSODEG00000006102	-	100	87.827	ENSCAFG00000014239	SF1	100	89.676	Canis_familiaris
ENSODEG00000006102	-	100	87.827	ENSCAFG00020014381	SF1	100	89.676	Canis_lupus_dingo
ENSODEG00000006102	-	90	93.857	ENSCHIG00000025867	SF1	92	93.857	Capra_hircus
ENSODEG00000006102	-	68	96.977	ENSCAPG00000010762	SF1	77	96.977	Cavia_aperea
ENSODEG00000006102	-	98	87.147	ENSCPOG00000012290	SF1	100	89.028	Cavia_porcellus
ENSODEG00000006102	-	87	81.915	ENSCCAG00000023781	-	94	82.826	Cebus_capucinus
ENSODEG00000006102	-	100	91.463	ENSCCAG00000037881	SF1	96	97.297	Cebus_capucinus
ENSODEG00000006102	-	100	92.705	ENSCATG00000011564	SF1	100	92.705	Cercocebus_atys
ENSODEG00000006102	-	81	89.792	ENSCSAG00000007258	SF1	85	97.645	Chlorocebus_sabaeus
ENSODEG00000006102	-	65	91.019	ENSCHOG00000006008	SF1	79	91.148	Choloepus_hoffmanni
ENSODEG00000006102	-	79	80.000	ENSCPBG00000023763	SF1	58	86.871	Chrysemys_picta_bellii
ENSODEG00000006102	-	60	55.497	ENSCING00000005564	-	74	57.713	Ciona_intestinalis
ENSODEG00000006102	-	74	53.731	ENSCSAVG00000009055	-	72	60.465	Ciona_savignyi
ENSODEG00000006102	-	100	87.827	ENSCANG00000042201	SF1	100	89.676	Colobus_angolensis_palliatus
ENSODEG00000006102	-	100	88.055	ENSCGRG00001003677	Sf1	100	87.596	Cricetulus_griseus_chok1gshd
ENSODEG00000006102	-	98	76.886	ENSCGRG00000001708	Sf1	84	96.930	Cricetulus_griseus_crigri
ENSODEG00000006102	-	59	81.622	ENSCVAG00000001670	sf1	63	76.528	Cyprinodon_variegatus
ENSODEG00000006102	-	63	78.908	ENSDARG00000008188	sf1	72	76.457	Danio_rerio
ENSODEG00000006102	-	81	89.225	ENSDNOG00000001282	SF1	85	97.002	Dasypus_novemcinctus
ENSODEG00000006102	-	98	93.584	ENSDORG00000016334	Sf1	99	93.584	Dipodomys_ordii
ENSODEG00000006102	-	88	86.261	ENSETEG00000012830	SF1	80	86.261	Echinops_telfairi
ENSODEG00000006102	-	81	89.414	ENSEASG00005018272	SF1	85	97.216	Equus_asinus_asinus
ENSODEG00000006102	-	81	89.603	ENSECAG00000024544	SF1	85	97.430	Equus_caballus
ENSODEG00000006102	-	62	96.438	ENSEEUG00000001058	SF1	100	96.438	Erinaceus_europaeus
ENSODEG00000006102	-	59	78.780	ENSELUG00000013225	sf1	56	71.806	Esox_lucius
ENSODEG00000006102	-	100	87.827	ENSFCAG00000012231	SF1	100	89.676	Felis_catus
ENSODEG00000006102	-	98	87.658	ENSFDAG00000009833	SF1	99	87.658	Fukomys_damarensis
ENSODEG00000006102	-	52	85.000	ENSGMOG00000007469	sf1	62	85.000	Gadus_morhua
ENSODEG00000006102	-	60	81.299	ENSGAFG00000019284	sf1	78	77.857	Gambusia_affinis
ENSODEG00000006102	-	72	86.593	ENSGAGG00000021691	SF1	64	86.652	Gopherus_agassizii
ENSODEG00000006102	-	100	87.673	ENSHGLG00000009541	SF1	100	89.522	Heterocephalus_glaber_female
ENSODEG00000006102	-	98	78.444	ENSHGLG00100013879	-	100	78.444	Heterocephalus_glaber_male
ENSODEG00000006102	-	69	86.667	ENSHGLG00100008076	-	87	84.491	Heterocephalus_glaber_male
ENSODEG00000006102	-	83	75.888	ENSHGLG00100008255	-	94	84.034	Heterocephalus_glaber_male
ENSODEG00000006102	-	98	87.304	ENSSTOG00000009790	-	100	89.185	Ictidomys_tridecemlineatus
ENSODEG00000006102	-	74	93.333	ENSSTOG00000024353	-	78	93.333	Ictidomys_tridecemlineatus
ENSODEG00000006102	-	100	87.519	ENSJJAG00000011788	Sf1	100	89.368	Jaculus_jaculus
ENSODEG00000006102	-	59	79.843	ENSLBEG00000019836	sf1	64	75.837	Labrus_bergylta
ENSODEG00000006102	-	66	75.714	ENSLACG00000018493	SF1	74	75.904	Latimeria_chalumnae
ENSODEG00000006102	-	59	82.888	ENSLOCG00000002130	sf1	77	69.361	Lepisosteus_oculatus
ENSODEG00000006102	-	99	92.093	ENSLAFG00000007201	SF1	100	92.093	Loxodonta_africana
ENSODEG00000006102	-	100	93.130	ENSMFAG00000033122	SF1	100	93.130	Macaca_fascicularis
ENSODEG00000006102	-	100	87.827	ENSMMUG00000022606	SF1	99	96.806	Macaca_mulatta
ENSODEG00000006102	-	100	92.705	ENSMNEG00000037901	SF1	100	92.705	Macaca_nemestrina
ENSODEG00000006102	-	100	91.641	ENSMLEG00000040706	SF1	100	91.641	Mandrillus_leucophaeus
ENSODEG00000006102	-	100	87.057	ENSMAUG00000014064	Sf1	100	88.906	Mesocricetus_auratus
ENSODEG00000006102	-	100	86.133	ENSMICG00000001202	SF1	96	97.059	Microcebus_murinus
ENSODEG00000006102	-	100	87.057	ENSMOCG00000022038	Sf1	100	88.906	Microtus_ochrogaster
ENSODEG00000006102	-	71	91.946	ENSMODG00000029407	SF1	97	91.946	Monodelphis_domestica
ENSODEG00000006102	-	100	87.057	MGP_CAROLIEiJ_G0022607	Sf1	100	95.506	Mus_caroli
ENSODEG00000006102	-	100	87.057	ENSMUSG00000024949	Sf1	100	95.506	Mus_musculus
ENSODEG00000006102	-	100	86.749	MGP_PahariEiJ_G0014101	Sf1	100	95.506	Mus_pahari
ENSODEG00000006102	-	100	87.057	MGP_SPRETEiJ_G0023518	Sf1	100	95.506	Mus_spretus
ENSODEG00000006102	-	88	93.599	ENSMPUG00000012684	SF1	90	93.599	Mustela_putorius_furo
ENSODEG00000006102	-	88	93.599	ENSMLUG00000015217	-	90	93.599	Myotis_lucifugus
ENSODEG00000006102	-	73	92.763	ENSMLUG00000029800	-	78	93.157	Myotis_lucifugus
ENSODEG00000006102	-	100	87.519	ENSNGAG00000005550	Sf1	100	89.368	Nannospalax_galili
ENSODEG00000006102	-	59	81.016	ENSNBRG00000017606	sf1	60	77.129	Neolamprologus_brichardi
ENSODEG00000006102	-	100	92.190	ENSNLEG00000005236	-	100	92.190	Nomascus_leucogenys
ENSODEG00000006102	-	78	91.423	ENSMEUG00000013424	SF1	85	96.444	Notamacropus_eugenii
ENSODEG00000006102	-	72	88.211	ENSOPRG00000005008	SF1	83	96.852	Ochotona_princeps
ENSODEG00000006102	-	64	83.990	ENSOANG00000002909	SF1	96	84.910	Ornithorhynchus_anatinus
ENSODEG00000006102	-	99	87.520	ENSOCUG00000026486	SF1	100	89.392	Oryctolagus_cuniculus
ENSODEG00000006102	-	61	78.005	ENSORLG00000011853	sf1	58	74.341	Oryzias_latipes
ENSODEG00000006102	-	62	76.750	ENSORLG00020011834	sf1	60	73.239	Oryzias_latipes_hni
ENSODEG00000006102	-	59	77.749	ENSORLG00015012855	sf1	59	74.101	Oryzias_latipes_hsok
ENSODEG00000006102	-	61	77.494	ENSOMEG00000005210	sf1	74	69.790	Oryzias_melastigma
ENSODEG00000006102	-	100	86.287	ENSOGAG00000016196	SF1	100	88.290	Otolemur_garnettii
ENSODEG00000006102	-	83	88.632	ENSOARG00000009166	SF1	82	97.645	Ovis_aries
ENSODEG00000006102	-	99	91.796	ENSPPAG00000002799	-	96	96.758	Pan_paniscus
ENSODEG00000006102	-	98	87.618	ENSPPRG00000013566	SF1	98	87.969	Panthera_pardus
ENSODEG00000006102	-	100	92.178	ENSPTRG00000003846	SF1	99	97.418	Pan_troglodytes
ENSODEG00000006102	-	100	92.705	ENSPANG00000020754	SF1	100	92.705	Papio_anubis
ENSODEG00000006102	-	52	75.976	ENSPKIG00000012116	sf1	86	72.107	Paramormyrops_kingsleyae
ENSODEG00000006102	-	55	84.046	ENSPSIG00000003610	SF1	84	76.471	Pelodiscus_sinensis
ENSODEG00000006102	-	100	90.687	ENSPEMG00000010463	Sf1	100	90.687	Peromyscus_maniculatus_bairdii
ENSODEG00000006102	-	100	86.420	ENSPCIG00000018173	SF1	100	86.574	Phascolarctos_cinereus
ENSODEG00000006102	-	60	83.113	ENSPFOG00000013683	sf1	68	78.759	Poecilia_formosa
ENSODEG00000006102	-	100	87.673	ENSPPYG00000003098	-	100	89.522	Pongo_abelii
ENSODEG00000006102	-	79	89.017	ENSPCAG00000013631	SF1	68	96.937	Procavia_capensis
ENSODEG00000006102	-	100	92.462	ENSPCOG00000027546	SF1	96	97.059	Propithecus_coquereli
ENSODEG00000006102	-	79	89.017	ENSPVAG00000016938	SF1	69	96.937	Pteropus_vampyrus
ENSODEG00000006102	-	90	93.174	ENSRNOG00000021085	Sf1	92	93.174	Rattus_norvegicus
ENSODEG00000006102	-	100	91.456	ENSRBIG00000042818	SF1	100	92.114	Rhinopithecus_bieti
ENSODEG00000006102	-	100	82.484	ENSRROG00000045655	SF1	94	95.400	Rhinopithecus_roxellana
ENSODEG00000006102	-	87	80.586	ENSSBOG00000022267	-	99	79.567	Saimiri_boliviensis_boliviensis
ENSODEG00000006102	-	64	89.268	ENSSHAG00000006841	SF1	75	90.488	Sarcophilus_harrisii
ENSODEG00000006102	-	79	68.797	ENSSMAG00000007549	sf1	63	73.944	Scophthalmus_maximus
ENSODEG00000006102	-	78	88.975	ENSSARG00000008180	SF1	88	89.693	Sorex_araneus
ENSODEG00000006102	-	76	78.764	ENSSPUG00000012907	SF1	76	82.646	Sphenodon_punctatus
ENSODEG00000006102	-	100	87.519	ENSSSCG00000013021	SF1	100	89.368	Sus_scrofa
ENSODEG00000006102	-	81	61.039	ENSTNIG00000004820	sf1	80	67.681	Tetraodon_nigroviridis
ENSODEG00000006102	-	73	90.175	ENSTBEG00000013133	SF1	66	90.132	Tupaia_belangeri
ENSODEG00000006102	-	79	85.135	ENSTTRG00000008857	SF1	85	92.544	Tursiops_truncatus
ENSODEG00000006102	-	68	85.144	ENSUAMG00000011977	SF1	86	88.248	Ursus_americanus
ENSODEG00000006102	-	82	95.556	ENSUMAG00000007268	SF1	96	95.556	Ursus_maritimus
ENSODEG00000006102	-	56	99.057	ENSVPAG00000011912	SF1	66	99.057	Vicugna_pacos
ENSODEG00000006102	-	81	89.792	ENSVVUG00000028585	SF1	85	97.645	Vulpes_vulpes
ENSODEG00000006102	-	58	82.466	ENSXCOG00000003704	sf1	75	78.465	Xiphophorus_couchianus
ENSODEG00000006102	-	59	80.739	ENSXMAG00000007822	sf1	61	77.033	Xiphophorus_maculatus