EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000006410 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: growth factor independent 1 transcriptional repressor
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 7324 bases
Position: chrJH651589.1:8529442-8536765
Accession: 101563141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000008576	zf-C2H2	PF00096.26	4.9e-25	1	4
ENSODEP00000008576	zf-C2H2	PF00096.26	4.9e-25	2	4
ENSODEP00000008576	zf-C2H2	PF00096.26	4.9e-25	3	4
ENSODEP00000008576	zf-C2H2	PF00096.26	4.9e-25	4	4
ENSODEP00000008576	zf-met	PF12874.7	1.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000008704	-	1457	XM_004635731	ENSODEP00000008576	135 (aa)	XP_004635788	UPI0000ECFA75

Gene Model

Click here to download ENSODEG00000006410's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000006410's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000006410	-	99	40.000	ENSODEG00000011185	ZNF784	72	40.000
ENSODEG00000006410	-	100	48.148	ENSODEG00000009193	ZNF112	52	48.148
ENSODEG00000006410	-	100	48.062	ENSODEG00000009980	ZNF582	66	48.062
ENSODEG00000006410	-	100	37.594	ENSODEG00000003654	-	52	37.594
ENSODEG00000006410	-	100	44.030	ENSODEG00000000805	-	100	44.030
ENSODEG00000006410	-	100	41.346	ENSODEG00000014451	MAZ	63	41.346
ENSODEG00000006410	-	100	46.053	ENSODEG00000005735	ZFP64	66	39.362
ENSODEG00000006410	-	100	50.000	ENSODEG00000016460	-	79	50.000
ENSODEG00000006410	-	100	39.535	ENSODEG00000020561	ZNF319	85	39.535
ENSODEG00000006410	-	100	48.031	ENSODEG00000008278	-	95	48.031
ENSODEG00000006410	-	100	46.457	ENSODEG00000014404	ZFP1	75	46.457
ENSODEG00000006410	-	99	45.570	ENSODEG00000013318	ZNF574	54	43.478
ENSODEG00000006410	-	100	46.269	ENSODEG00000017047	-	87	46.269
ENSODEG00000006410	-	100	54.321	ENSODEG00000014575	-	50	53.488
ENSODEG00000006410	-	100	47.761	ENSODEG00000002735	ZFP62	82	47.761
ENSODEG00000006410	-	99	47.244	ENSODEG00000015543	-	91	47.244
ENSODEG00000006410	-	99	44.776	ENSODEG00000009602	ZNF81	56	44.776
ENSODEG00000006410	-	100	48.031	ENSODEG00000008851	-	78	48.031
ENSODEG00000006410	-	99	47.015	ENSODEG00000005837	ZNF2	64	47.015
ENSODEG00000006410	-	99	46.018	ENSODEG00000009133	PRDM5	74	44.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000006410	-	100	100.000	ENSAMEG00000013858	-	92	100.000	Ailuropoda_melanoleuca
ENSODEG00000006410	-	99	72.388	ENSACIG00000002180	-	99	72.388	Amphilophus_citrinellus
ENSODEG00000006410	-	100	100.000	ENSAPLG00000015700	GFI1	50	100.000	Anas_platyrhynchos
ENSODEG00000006410	-	84	82.143	ENSACLG00000001258	-	91	82.143	Astatotilapia_calliptera
ENSODEG00000006410	-	99	93.284	ENSAMXG00000006669	GFI1	54	93.284	Astyanax_mexicanus
ENSODEG00000006410	-	82	82.883	ENSAMXG00000015228	-	51	82.883	Astyanax_mexicanus
ENSODEG00000006410	-	84	100.000	ENSCAPG00000016268	-	100	100.000	Cavia_aperea
ENSODEG00000006410	-	100	99.259	ENSCPBG00000015742	-	100	99.259	Chrysemys_picta_bellii
ENSODEG00000006410	-	99	78.358	ENSCING00000011342	-	71	78.358	Ciona_intestinalis
ENSODEG00000006410	-	100	79.259	ENSCSAVG00000005904	-	83	79.259	Ciona_savignyi
ENSODEG00000006410	-	100	100.000	ENSCGRG00000013485	-	100	100.000	Cricetulus_griseus_crigri
ENSODEG00000006410	-	100	100.000	ENSDORG00000023443	-	100	100.000	Dipodomys_ordii
ENSODEG00000006410	-	100	100.000	ENSFDAG00000019296	-	100	100.000	Fukomys_damarensis
ENSODEG00000006410	-	100	99.259	ENSGAGG00000015899	GFI1	100	99.259	Gopherus_agassizii
ENSODEG00000006410	-	100	96.296	ENSIPUG00000013414	GFI1	56	96.296	Ictalurus_punctatus
ENSODEG00000006410	-	82	81.982	ENSIPUG00000021407	-	52	81.982	Ictalurus_punctatus
ENSODEG00000006410	-	84	100.000	ENSJJAG00000022622	-	100	100.000	Jaculus_jaculus
ENSODEG00000006410	-	100	100.000	ENSMMUG00000005068	GFI1	100	100.000	Macaca_mulatta
ENSODEG00000006410	-	100	100.000	ENSMAUG00000021273	-	100	100.000	Mesocricetus_auratus
ENSODEG00000006410	-	100	100.000	ENSMOCG00000004478	-	100	100.000	Microtus_ochrogaster
ENSODEG00000006410	-	100	95.556	ENSMMOG00000005556	gfi1ab	62	95.556	Mola_mola
ENSODEG00000006410	-	100	100.000	MGP_CAROLIEiJ_G0027508	Gfi1	100	100.000	Mus_caroli
ENSODEG00000006410	-	100	100.000	MGP_PahariEiJ_G0017280	Gfi1	100	100.000	Mus_pahari
ENSODEG00000006410	-	100	100.000	ENSNGAG00000002549	-	100	100.000	Nannospalax_galili
ENSODEG00000006410	-	84	78.761	ENSNBRG00000001834	-	94	78.761	Neolamprologus_brichardi
ENSODEG00000006410	-	84	80.531	ENSNBRG00000010351	-	88	80.531	Neolamprologus_brichardi
ENSODEG00000006410	-	100	98.519	ENSOANG00000022289	-	72	98.519	Ornithorhynchus_anatinus
ENSODEG00000006410	-	99	88.722	ENSPTIG00000002680	-	99	88.722	Panthera_tigris_altaica
ENSODEG00000006410	-	100	97.778	ENSPMGG00000012546	gfi1ab	73	97.778	Periophthalmus_magnuspinnatus
ENSODEG00000006410	-	100	97.778	ENSPLAG00000010879	gfi1ab	55	97.778	Poecilia_latipinna
ENSODEG00000006410	-	83	82.143	ENSPNYG00000001775	-	88	82.143	Pundamilia_nyererei
ENSODEG00000006410	-	81	82.727	ENSPNAG00000014299	-	54	82.727	Pygocentrus_nattereri
ENSODEG00000006410	-	96	71.756	ENSSLDG00000017614	-	95	71.756	Seriola_lalandi_dorsalis
ENSODEG00000006410	-	100	97.778	ENSSPAG00000009140	gfi1ab	58	97.778	Stegastes_partitus
ENSODEG00000006410	-	100	100.000	ENSTGUG00000006060	GFI1	58	100.000	Taeniopygia_guttata
ENSODEG00000006410	-	100	100.000	ENSUMAG00000011251	-	100	100.000	Ursus_maritimus
ENSODEG00000006410	-	83	92.857	ENSXCOG00000009186	-	90	92.857	Xiphophorus_couchianus
ENSODEG00000006410	-	96	64.667	ENSXMAG00000006527	-	50	64.667	Xiphophorus_maculatus