EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000007164 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 692 bases
Position: chrJH651553.1:14656801-14657492
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000009581	Smg4_UPF3	PF03467.15	1.6e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000009724	-	645	-	ENSODEP00000009581	214 (aa)	-	-

Gene Model

Click here to download ENSODEG00000007164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000007164's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000007164	-	95	61.502	ENSODEG00000000596	-	99	61.502
ENSODEG00000007164	-	76	53.672	ENSODEG00000009176	-	69	53.672
ENSODEG00000007164	-	90	80.569	ENSODEG00000002186	-	52	80.702
ENSODEG00000007164	-	95	58.824	ENSODEG00000006064	-	98	61.086

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000007164	-	93	77.523	ENSG00000125351	UPF3B	99	77.982	Homo_sapiens
ENSODEG00000007164	-	70	56.886	ENSG00000169062	UPF3A	53	58.929	Homo_sapiens
ENSODEG00000007164	-	75	54.749	ENSACIG00000020468	upf3a	88	51.852	Amphilophus_citrinellus
ENSODEG00000007164	-	86	68.947	ENSANAG00000033169	-	78	66.364	Aotus_nancymaae
ENSODEG00000007164	-	90	74.519	ENSANAG00000025598	-	69	70.044	Aotus_nancymaae
ENSODEG00000007164	-	90	78.199	ENSANAG00000021894	-	96	78.673	Aotus_nancymaae
ENSODEG00000007164	-	86	53.886	ENSAMXG00000000199	upf3b	69	51.092	Astyanax_mexicanus
ENSODEG00000007164	-	65	60.135	ENSBTAG00000047365	-	72	57.059	Bos_taurus
ENSODEG00000007164	-	90	79.147	ENSBTAG00000035615	UPF3B	73	79.386	Bos_taurus
ENSODEG00000007164	-	90	78.199	ENSCJAG00000004975	UPF3B	96	79.147	Callithrix_jacchus
ENSODEG00000007164	-	90	78.673	ENSCHIG00000018011	-	73	78.947	Capra_hircus
ENSODEG00000007164	-	90	77.725	ENSTSYG00000014690	UPF3B	96	72.018	Carlito_syrichta
ENSODEG00000007164	-	90	44.076	ENSCCAG00000021964	-	65	48.684	Cebus_capucinus
ENSODEG00000007164	-	84	68.085	ENSCCAG00000029813	-	77	61.062	Cebus_capucinus
ENSODEG00000007164	-	90	79.147	ENSCATG00000017506	UPF3B	96	79.621	Cercocebus_atys
ENSODEG00000007164	-	79	40.314	ENSCING00000008396	-	91	44.516	Ciona_intestinalis
ENSODEG00000007164	-	90	79.147	ENSCANG00000029220	UPF3B	70	79.386	Colobus_angolensis_palliatus
ENSODEG00000007164	-	90	71.564	ENSCGRG00001013643	-	61	72.807	Cricetulus_griseus_chok1gshd
ENSODEG00000007164	-	90	78.673	ENSEASG00005012919	UPF3B	51	73.950	Equus_asinus_asinus
ENSODEG00000007164	-	90	78.673	ENSECAG00000016947	UPF3B	51	73.950	Equus_caballus
ENSODEG00000007164	-	66	55.000	ENSGMOG00000019615	upf3a	54	54.696	Gadus_morhua
ENSODEG00000007164	-	65	64.626	ENSGALG00000016815	-	67	66.667	Gallus_gallus
ENSODEG00000007164	-	66	55.625	ENSGACG00000001972	upf3a	55	55.249	Gasterosteus_aculeatus
ENSODEG00000007164	-	90	53.774	ENSGACG00000017435	upf3b	77	55.459	Gasterosteus_aculeatus
ENSODEG00000007164	-	71	59.259	ENSGAGG00000001952	UPF3A	89	61.111	Gopherus_agassizii
ENSODEG00000007164	-	90	79.147	ENSGGOG00000023995	UPF3B	80	79.503	Gorilla_gorilla
ENSODEG00000007164	-	90	78.607	ENSHGLG00000011189	-	53	79.358	Heterocephalus_glaber_female
ENSODEG00000007164	-	90	78.607	ENSHGLG00100001889	-	53	79.358	Heterocephalus_glaber_male
ENSODEG00000007164	-	70	57.485	ENSHCOG00000013985	upf3a	60	61.905	Hippocampus_comes
ENSODEG00000007164	-	69	55.901	ENSSTOG00000030282	-	72	51.913	Ictidomys_tridecemlineatus
ENSODEG00000007164	-	65	59.184	ENSJJAG00000018099	-	74	54.971	Jaculus_jaculus
ENSODEG00000007164	-	90	79.147	ENSMFAG00000045414	UPF3B	96	79.621	Macaca_fascicularis
ENSODEG00000007164	-	95	57.391	ENSMFAG00000045275	-	98	59.565	Macaca_fascicularis
ENSODEG00000007164	-	95	53.043	ENSMMUG00000046682	-	98	55.217	Macaca_mulatta
ENSODEG00000007164	-	90	79.147	ENSMMUG00000020222	UPF3B	96	79.621	Macaca_mulatta
ENSODEG00000007164	-	90	79.147	ENSMNEG00000039794	UPF3B	96	79.621	Macaca_nemestrina
ENSODEG00000007164	-	95	57.391	ENSMNEG00000040898	-	98	59.565	Macaca_nemestrina
ENSODEG00000007164	-	90	79.147	ENSMLEG00000010999	UPF3B	96	79.621	Mandrillus_leucophaeus
ENSODEG00000007164	-	90	78.673	ENSMICG00000001743	UPF3B	70	78.947	Microcebus_murinus
ENSODEG00000007164	-	70	55.090	ENSMOCG00000000550	Upf3a	59	52.093	Microtus_ochrogaster
ENSODEG00000007164	-	86	55.729	ENSNBRG00000011560	upf3b	96	53.416	Neolamprologus_brichardi
ENSODEG00000007164	-	95	64.253	ENSNLEG00000027516	-	99	64.253	Nomascus_leucogenys
ENSODEG00000007164	-	84	78.283	ENSNLEG00000014897	UPF3B	79	78.947	Nomascus_leucogenys
ENSODEG00000007164	-	68	58.282	ENSORLG00020003758	upf3b	59	55.155	Oryzias_latipes_hni
ENSODEG00000007164	-	90	79.147	ENSPPAG00000040390	UPF3B	80	79.503	Pan_paniscus
ENSODEG00000007164	-	90	78.673	ENSPTIG00000015264	UPF3B	70	78.947	Panthera_tigris_altaica
ENSODEG00000007164	-	90	79.147	ENSPTRG00000022228	UPF3B	80	79.503	Pan_troglodytes
ENSODEG00000007164	-	90	79.147	ENSPANG00000000900	UPF3B	96	79.621	Papio_anubis
ENSODEG00000007164	-	94	58.952	ENSPANG00000029350	-	98	58.952	Papio_anubis
ENSODEG00000007164	-	72	61.047	ENSPKIG00000019226	upf3b	74	63.025	Paramormyrops_kingsleyae
ENSODEG00000007164	-	90	54.976	ENSPMGG00000016067	upf3b	76	55.702	Periophthalmus_magnuspinnatus
ENSODEG00000007164	-	77	54.645	ENSPCIG00000019590	-	69	58.282	Phascolarctos_cinereus
ENSODEG00000007164	-	65	60.544	ENSPLAG00000011960	upf3a	64	59.649	Poecilia_latipinna
ENSODEG00000007164	-	63	52.817	ENSPREG00000012214	upf3b	95	53.086	Poecilia_reticulata
ENSODEG00000007164	-	90	79.147	ENSPPYG00000020675	-	68	79.386	Pongo_abelii
ENSODEG00000007164	-	90	79.147	ENSPCOG00000021960	UPF3B	70	79.386	Propithecus_coquereli
ENSODEG00000007164	-	90	53.774	ENSPNAG00000021528	upf3b	70	54.585	Pygocentrus_nattereri
ENSODEG00000007164	-	90	79.147	ENSRROG00000041031	UPF3B	96	79.621	Rhinopithecus_roxellana
ENSODEG00000007164	-	90	77.725	ENSSBOG00000019740	UPF3B	99	78.199	Saimiri_boliviensis_boliviensis
ENSODEG00000007164	-	68	55.215	ENSSMAG00000003858	upf3a	81	54.032	Scophthalmus_maximus
ENSODEG00000007164	-	92	55.349	ENSSMAG00000012913	upf3b	68	56.332	Scophthalmus_maximus
ENSODEG00000007164	-	70	56.287	ENSSDUG00000009680	upf3a	67	59.292	Seriola_dumerili
ENSODEG00000007164	-	70	56.287	ENSSPAG00000007938	upf3a	72	55.625	Stegastes_partitus
ENSODEG00000007164	-	87	45.833	ENSSSCG00000024679	UPF3A	50	51.364	Sus_scrofa
ENSODEG00000007164	-	90	78.673	ENSVVUG00000011594	UPF3B	97	79.147	Vulpes_vulpes
ENSODEG00000007164	-	68	63.190	ENSXETG00000007440	upf3b	91	57.205	Xenopus_tropicalis
ENSODEG00000007164	-	91	53.241	ENSXCOG00000016586	upf3b	98	54.167	Xiphophorus_couchianus