EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000007980 (Gene tree)
Gene ID: 101560889
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 11969 bases
Position: chrJH651592.1:729484-741452
Accession: 101560889
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000010707	RRM_1	PF00076.22	3.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000010861	RBM38-202	868	XM_004636006	ENSODEP00000010708	29 (aa)	-	UPI00021CF755
ENSODET00000010860	RBM38-201	949	XM_004636005	ENSODEP00000010707	239 (aa)	XP_004636062	UPI000333821D

Gene Model

Click here to download ENSODEG00000007980's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000007980's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000007980	RBM38	63	81.046	ENSODEG00000006411	RBM24	100	68.067
ENSODEG00000007980	RBM38	59	34.426	ENSODEG00000006328	MSI1	84	34.426

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000007980	RBM38	100	97.071	ENSG00000132819	RBM38	100	99.174	Homo_sapiens
ENSODEG00000007980	RBM38	91	67.117	ENSAPOG00000009939	-	94	67.568	Acanthochromis_polyacanthus
ENSODEG00000007980	RBM38	89	60.345	ENSAPOG00000003301	rbm38	91	60.345	Acanthochromis_polyacanthus
ENSODEG00000007980	RBM38	89	68.807	ENSACIG00000012502	-	100	88.034	Amphilophus_citrinellus
ENSODEG00000007980	RBM38	89	57.940	ENSACIG00000000010	rbm38	91	57.940	Amphilophus_citrinellus
ENSODEG00000007980	RBM38	99	62.963	ENSAOCG00000012559	RBM38	99	63.525	Amphiprion_ocellaris
ENSODEG00000007980	RBM38	89	60.345	ENSAOCG00000013497	-	91	60.345	Amphiprion_ocellaris
ENSODEG00000007980	RBM38	99	61.475	ENSAPEG00000013137	rbm38	99	61.475	Amphiprion_percula
ENSODEG00000007980	RBM38	90	64.286	ENSAPEG00000023581	-	95	64.706	Amphiprion_percula
ENSODEG00000007980	RBM38	90	61.607	ENSATEG00000016366	rbm38	94	61.607	Anabas_testudineus
ENSODEG00000007980	RBM38	89	65.957	ENSATEG00000016710	-	92	66.379	Anabas_testudineus
ENSODEG00000007980	RBM38	91	77.727	ENSACAG00000016238	RBM38	97	74.153	Anolis_carolinensis
ENSODEG00000007980	RBM38	90	95.833	ENSANAG00000031959	RBM38	100	100.000	Aotus_nancymaae
ENSODEG00000007980	RBM38	89	65.801	ENSACLG00000019514	-	92	65.948	Astatotilapia_calliptera
ENSODEG00000007980	RBM38	77	64.324	ENSAMXG00000038120	rbm38	76	64.865	Astyanax_mexicanus
ENSODEG00000007980	RBM38	91	66.522	ENSAMXG00000015601	-	95	67.391	Astyanax_mexicanus
ENSODEG00000007980	RBM38	100	94.979	ENSBTAG00000008105	RBM38	100	94.979	Bos_taurus
ENSODEG00000007980	RBM38	58	62.319	WBGene00006321	sup-12	59	85.393	Caenorhabditis_elegans
ENSODEG00000007980	RBM38	100	96.234	ENSCJAG00000019139	RBM38	100	100.000	Callithrix_jacchus
ENSODEG00000007980	RBM38	100	95.397	ENSCAFG00020021943	RBM38	100	95.397	Canis_lupus_dingo
ENSODEG00000007980	RBM38	100	93.305	ENSCHIG00000002609	RBM38	100	93.305	Capra_hircus
ENSODEG00000007980	RBM38	100	98.326	ENSCPOG00000012781	RBM38	100	98.326	Cavia_porcellus
ENSODEG00000007980	RBM38	100	96.234	ENSCCAG00000036872	RBM38	100	100.000	Cebus_capucinus
ENSODEG00000007980	RBM38	100	96.653	ENSCATG00000032133	RBM38	100	100.000	Cercocebus_atys
ENSODEG00000007980	RBM38	96	98.261	ENSCLAG00000005906	RBM38	100	98.261	Chinchilla_lanigera
ENSODEG00000007980	RBM38	100	96.653	ENSCSAG00000015503	RBM38	100	96.653	Chlorocebus_sabaeus
ENSODEG00000007980	RBM38	90	80.734	ENSCPBG00000024059	RBM38	100	80.734	Chrysemys_picta_bellii
ENSODEG00000007980	RBM38	99	74.790	ENSCANG00000030105	-	89	74.790	Colobus_angolensis_palliatus
ENSODEG00000007980	RBM38	100	92.469	ENSCGRG00001012928	Rbm38	100	92.469	Cricetulus_griseus_chok1gshd
ENSODEG00000007980	RBM38	89	71.233	ENSCSEG00000004701	-	93	71.818	Cynoglossus_semilaevis
ENSODEG00000007980	RBM38	62	68.667	ENSCSEG00000020943	rbm38	60	61.957	Cynoglossus_semilaevis
ENSODEG00000007980	RBM38	89	66.094	ENSCVAG00000005472	-	92	66.809	Cyprinodon_variegatus
ENSODEG00000007980	RBM38	89	60.515	ENSCVAG00000015952	rbm38	91	61.373	Cyprinodon_variegatus
ENSODEG00000007980	RBM38	88	64.126	ENSDARG00000058818	rbm38	92	64.126	Danio_rerio
ENSODEG00000007980	RBM38	90	87.963	ENSDNOG00000032004	RBM38	100	87.963	Dasypus_novemcinctus
ENSODEG00000007980	RBM38	61	67.808	ENSEBUG00000015164	rbm38	88	67.808	Eptatretus_burgeri
ENSODEG00000007980	RBM38	100	94.142	ENSECAG00000007700	RBM38	100	94.142	Equus_caballus
ENSODEG00000007980	RBM38	100	92.083	ENSEEUG00000013489	RBM38	100	93.333	Erinaceus_europaeus
ENSODEG00000007980	RBM38	90	66.245	ENSELUG00000005849	-	95	66.245	Esox_lucius
ENSODEG00000007980	RBM38	84	65.672	ENSELUG00000000585	-	87	65.672	Esox_lucius
ENSODEG00000007980	RBM38	100	95.397	ENSFCAG00000042916	RBM38	100	98.347	Felis_catus
ENSODEG00000007980	RBM38	74	84.831	ENSFALG00000010805	RBM38	99	81.250	Ficedula_albicollis
ENSODEG00000007980	RBM38	89	70.833	ENSFHEG00000006160	-	92	70.833	Fundulus_heteroclitus
ENSODEG00000007980	RBM38	89	58.369	ENSFHEG00000017748	rbm38	91	58.369	Fundulus_heteroclitus
ENSODEG00000007980	RBM38	75	70.718	ENSGMOG00000016655	-	96	74.176	Gadus_morhua
ENSODEG00000007980	RBM38	90	79.358	ENSGALG00000026081	RBM38	100	79.358	Gallus_gallus
ENSODEG00000007980	RBM38	89	63.679	ENSGACG00000015224	rbm38	98	63.679	Gasterosteus_aculeatus
ENSODEG00000007980	RBM38	90	67.857	ENSGACG00000009873	-	100	67.556	Gasterosteus_aculeatus
ENSODEG00000007980	RBM38	90	81.193	ENSGAGG00000001187	RBM38	100	81.193	Gopherus_agassizii
ENSODEG00000007980	RBM38	96	60.251	ENSHBUG00000012058	rbm38	98	60.251	Haplochromis_burtoni
ENSODEG00000007980	RBM38	89	70.183	ENSHBUG00000011778	-	92	70.320	Haplochromis_burtoni
ENSODEG00000007980	RBM38	100	94.142	ENSHGLG00000015077	RBM38	100	94.142	Heterocephalus_glaber_female
ENSODEG00000007980	RBM38	69	63.473	ENSHCOG00000019040	rbm38	70	63.473	Hippocampus_comes
ENSODEG00000007980	RBM38	79	72.396	ENSHCOG00000005622	-	54	73.958	Hippocampus_comes
ENSODEG00000007980	RBM38	91	66.379	ENSIPUG00000019349	-	95	66.379	Ictalurus_punctatus
ENSODEG00000007980	RBM38	88	53.814	ENSKMAG00000012402	rbm38	98	54.237	Kryptolebias_marmoratus
ENSODEG00000007980	RBM38	89	59.657	ENSLBEG00000018878	rbm38	91	59.657	Labrus_bergylta
ENSODEG00000007980	RBM38	89	69.266	ENSLBEG00000016163	RBM38	92	69.863	Labrus_bergylta
ENSODEG00000007980	RBM38	91	71.111	ENSLOCG00000003456	rbm38	95	71.111	Lepisosteus_oculatus
ENSODEG00000007980	RBM38	98	96.596	ENSMFAG00000043808	RBM38	97	100.000	Macaca_fascicularis
ENSODEG00000007980	RBM38	100	96.653	ENSMMUG00000031391	RBM38	100	100.000	Macaca_mulatta
ENSODEG00000007980	RBM38	100	96.653	ENSMNEG00000034683	RBM38	100	100.000	Macaca_nemestrina
ENSODEG00000007980	RBM38	91	64.557	ENSMAMG00000020499	RBM38	95	66.245	Mastacembelus_armatus
ENSODEG00000007980	RBM38	89	59.657	ENSMAMG00000024135	rbm38	91	59.657	Mastacembelus_armatus
ENSODEG00000007980	RBM38	89	70.183	ENSMZEG00005000849	-	92	70.320	Maylandia_zebra
ENSODEG00000007980	RBM38	89	58.369	ENSMZEG00005026036	rbm38	91	58.369	Maylandia_zebra
ENSODEG00000007980	RBM38	100	92.887	ENSMAUG00000021211	Rbm38	100	92.887	Mesocricetus_auratus
ENSODEG00000007980	RBM38	90	96.296	ENSMICG00000038011	RBM38	100	96.296	Microcebus_murinus
ENSODEG00000007980	RBM38	100	92.050	ENSMOCG00000008715	Rbm38	100	92.050	Microtus_ochrogaster
ENSODEG00000007980	RBM38	99	66.109	ENSMMOG00000020051	-	99	66.250	Mola_mola
ENSODEG00000007980	RBM38	100	78.423	ENSMODG00000016458	RBM38	100	78.423	Monodelphis_domestica
ENSODEG00000007980	RBM38	77	74.603	ENSMALG00000004680	RBM38	70	74.603	Monopterus_albus
ENSODEG00000007980	RBM38	90	57.727	ENSMALG00000022327	rbm38	67	71.613	Monopterus_albus
ENSODEG00000007980	RBM38	100	93.305	MGP_CAROLIEiJ_G0024745	Rbm38	100	93.305	Mus_caroli
ENSODEG00000007980	RBM38	100	93.724	ENSMUSG00000027510	Rbm38	100	93.724	Mus_musculus
ENSODEG00000007980	RBM38	100	93.305	MGP_PahariEiJ_G0026186	Rbm38	100	93.305	Mus_pahari
ENSODEG00000007980	RBM38	100	93.305	MGP_SPRETEiJ_G0025665	Rbm38	100	93.305	Mus_spretus
ENSODEG00000007980	RBM38	77	96.216	ENSMPUG00000006518	RBM38	93	96.257	Mustela_putorius_furo
ENSODEG00000007980	RBM38	90	91.204	ENSMLUG00000011140	RBM38	100	91.204	Myotis_lucifugus
ENSODEG00000007980	RBM38	96	60.417	ENSNBRG00000022685	rbm38	98	60.417	Neolamprologus_brichardi
ENSODEG00000007980	RBM38	89	66.379	ENSNBRG00000022545	-	92	66.524	Neolamprologus_brichardi
ENSODEG00000007980	RBM38	58	79.710	ENSMEUG00000005475	-	100	79.710	Notamacropus_eugenii
ENSODEG00000007980	RBM38	88	59.483	ENSONIG00000017073	rbm38	93	59.483	Oreochromis_niloticus
ENSODEG00000007980	RBM38	88	66.234	ENSONIG00000020324	-	92	66.379	Oreochromis_niloticus
ENSODEG00000007980	RBM38	97	77.586	ENSOANG00000009259	RBM38	90	76.695	Ornithorhynchus_anatinus
ENSODEG00000007980	RBM38	89	55.983	ENSORLG00000012154	rbm38	91	55.128	Oryzias_latipes
ENSODEG00000007980	RBM38	89	63.090	ENSORLG00000027180	-	92	64.807	Oryzias_latipes
ENSODEG00000007980	RBM38	89	63.090	ENSORLG00020020751	-	95	62.500	Oryzias_latipes_hni
ENSODEG00000007980	RBM38	89	55.983	ENSORLG00020017871	rbm38	91	55.983	Oryzias_latipes_hni
ENSODEG00000007980	RBM38	97	57.447	ENSORLG00015012606	rbm38	97	57.447	Oryzias_latipes_hsok
ENSODEG00000007980	RBM38	89	63.362	ENSORLG00015017040	-	92	65.665	Oryzias_latipes_hsok
ENSODEG00000007980	RBM38	89	63.636	ENSOMEG00000023912	-	92	64.069	Oryzias_melastigma
ENSODEG00000007980	RBM38	89	55.983	ENSOMEG00000006805	rbm38	91	55.983	Oryzias_melastigma
ENSODEG00000007980	RBM38	100	96.667	ENSOGAG00000029136	RBM38	100	96.667	Otolemur_garnettii
ENSODEG00000007980	RBM38	100	95.397	ENSPPRG00000009507	RBM38	100	98.347	Panthera_pardus
ENSODEG00000007980	RBM38	87	93.750	ENSPTRG00000013661	RBM38	100	99.174	Pan_troglodytes
ENSODEG00000007980	RBM38	52	98.387	ENSPTRG00000045845	-	68	98.387	Pan_troglodytes
ENSODEG00000007980	RBM38	100	96.653	ENSPANG00000020919	-	100	100.000	Papio_anubis
ENSODEG00000007980	RBM38	99	74.370	ENSPANG00000033127	-	100	74.370	Papio_anubis
ENSODEG00000007980	RBM38	94	62.705	ENSPKIG00000025417	rbm38	98	62.705	Paramormyrops_kingsleyae
ENSODEG00000007980	RBM38	91	67.699	ENSPKIG00000018122	-	100	88.889	Paramormyrops_kingsleyae
ENSODEG00000007980	RBM38	93	79.911	ENSPSIG00000011649	RBM38	95	79.911	Pelodiscus_sinensis
ENSODEG00000007980	RBM38	89	60.944	ENSPMGG00000017094	-	92	63.519	Periophthalmus_magnuspinnatus
ENSODEG00000007980	RBM38	90	56.723	ENSPMGG00000011343	rbm38	94	57.983	Periophthalmus_magnuspinnatus
ENSODEG00000007980	RBM38	100	78.423	ENSPCIG00000013648	RBM38	100	78.423	Phascolarctos_cinereus
ENSODEG00000007980	RBM38	89	57.563	ENSPFOG00000011658	rbm38	91	59.829	Poecilia_formosa
ENSODEG00000007980	RBM38	89	66.250	ENSPLAG00000002500	-	92	66.949	Poecilia_latipinna
ENSODEG00000007980	RBM38	89	58.403	ENSPLAG00000005218	rbm38	91	59.829	Poecilia_latipinna
ENSODEG00000007980	RBM38	89	56.838	ENSPMEG00000015770	rbm38	91	59.829	Poecilia_mexicana
ENSODEG00000007980	RBM38	89	57.983	ENSPREG00000007398	rbm38	91	60.256	Poecilia_reticulata
ENSODEG00000007980	RBM38	100	95.833	ENSPCOG00000026201	RBM38	100	99.180	Propithecus_coquereli
ENSODEG00000007980	RBM38	100	66.527	ENSPVAG00000006457	RBM38	100	66.527	Pteropus_vampyrus
ENSODEG00000007980	RBM38	89	70.183	ENSPNYG00000019727	-	100	88.889	Pundamilia_nyererei
ENSODEG00000007980	RBM38	96	59.494	ENSPNYG00000021373	rbm38	98	60.251	Pundamilia_nyererei
ENSODEG00000007980	RBM38	91	66.957	ENSPNAG00000015123	-	96	78.030	Pygocentrus_nattereri
ENSODEG00000007980	RBM38	85	65.728	ENSPNAG00000010596	rbm38	88	65.728	Pygocentrus_nattereri
ENSODEG00000007980	RBM38	100	93.724	ENSRNOG00000006420	Rbm38	100	93.724	Rattus_norvegicus
ENSODEG00000007980	RBM38	100	79.498	ENSRROG00000036388	-	100	79.498	Rhinopithecus_roxellana
ENSODEG00000007980	RBM38	90	95.370	ENSSBOG00000031053	RBM38	100	100.000	Saimiri_boliviensis_boliviensis
ENSODEG00000007980	RBM38	89	66.364	ENSSFOG00015004453	rbm38	92	69.545	Scleropages_formosus
ENSODEG00000007980	RBM38	89	60.944	ENSSDUG00000022611	rbm38	91	60.944	Seriola_dumerili
ENSODEG00000007980	RBM38	89	66.524	ENSSDUG00000021082	RBM38	92	66.953	Seriola_dumerili
ENSODEG00000007980	RBM38	89	66.524	ENSSLDG00000011778	RBM38	92	66.953	Seriola_lalandi_dorsalis
ENSODEG00000007980	RBM38	89	64.352	ENSSLDG00000010845	rbm38	90	64.352	Seriola_lalandi_dorsalis
ENSODEG00000007980	RBM38	89	68.545	ENSSPAG00000020989	RBM38	91	70.233	Stegastes_partitus
ENSODEG00000007980	RBM38	89	60.086	ENSSPAG00000011113	rbm38	91	60.086	Stegastes_partitus
ENSODEG00000007980	RBM38	100	95.816	ENSSSCG00000007504	RBM38	100	95.816	Sus_scrofa
ENSODEG00000007980	RBM38	89	66.379	ENSTRUG00000019869	-	92	67.382	Takifugu_rubripes
ENSODEG00000007980	RBM38	89	57.642	ENSTRUG00000024954	rbm38	91	57.205	Takifugu_rubripes
ENSODEG00000007980	RBM38	89	69.231	ENSTNIG00000007093	-	97	69.820	Tetraodon_nigroviridis
ENSODEG00000007980	RBM38	65	89.916	ENSTBEG00000001689	-	64	89.916	Tupaia_belangeri
ENSODEG00000007980	RBM38	100	95.816	ENSUAMG00000019780	RBM38	100	95.816	Ursus_americanus
ENSODEG00000007980	RBM38	100	95.397	ENSVVUG00000017246	RBM38	100	95.397	Vulpes_vulpes
ENSODEG00000007980	RBM38	92	72.000	ENSXETG00000011268	rbm38	100	72.889	Xenopus_tropicalis
ENSODEG00000007980	RBM38	89	59.916	ENSXMAG00000023662	rbm38	91	60.086	Xiphophorus_maculatus