EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000008038 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 288074 bases
Position: chrJH651587.1:1057143-1345216
Accession: 101565915
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000010788	EST1	PF10374.9	3.2e-08	1	1
ENSODEP00000010788	EST1_DNA_bind	PF10373.9	4.3e-44	1	1
ENSODEP00000010789	EST1_DNA_bind	PF10373.9	4.1e-10	1	1
ENSODEP00000010788	PIN_4	PF13638.6	1.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000010942	SMG6-201	4080	XM_012515616	ENSODEP00000010788	1359 (aa)	-	-
ENSODET00000010943	SMG6-202	600	-	ENSODEP00000010789	199 (aa)	-	-

Gene Model

Click here to download ENSODEG00000008038's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000008038's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000008038	SMG6	100	83.978	ENSG00000070366	SMG6	100	97.070	Homo_sapiens
ENSODEG00000008038	SMG6	81	54.651	ENSAPOG00000019448	smg6	74	49.020	Acanthochromis_polyacanthus
ENSODEG00000008038	SMG6	100	85.644	ENSAMEG00000007632	SMG6	100	85.644	Ailuropoda_melanoleuca
ENSODEG00000008038	SMG6	81	54.070	ENSAOCG00000002630	smg6	74	48.941	Amphiprion_ocellaris
ENSODEG00000008038	SMG6	81	54.651	ENSAPEG00000019101	smg6	74	49.098	Amphiprion_percula
ENSODEG00000008038	SMG6	81	53.757	ENSATEG00000006483	smg6	77	46.731	Anabas_testudineus
ENSODEG00000008038	SMG6	84	71.257	ENSACAG00000011783	SMG6	99	51.767	Anolis_carolinensis
ENSODEG00000008038	SMG6	100	87.283	ENSANAG00000035760	SMG6	100	87.283	Aotus_nancymaae
ENSODEG00000008038	SMG6	81	52.907	ENSACLG00000005288	smg6	82	47.568	Astatotilapia_calliptera
ENSODEG00000008038	SMG6	82	53.571	ENSAMXG00000017326	smg6	99	44.213	Astyanax_mexicanus
ENSODEG00000008038	SMG6	100	85.151	ENSBTAG00000000267	SMG6	100	85.151	Bos_taurus
ENSODEG00000008038	SMG6	100	85.644	ENSCJAG00000001820	SMG6	100	85.644	Callithrix_jacchus
ENSODEG00000008038	SMG6	100	85.222	ENSCAFG00000019260	SMG6	100	85.222	Canis_familiaris
ENSODEG00000008038	SMG6	100	85.222	ENSCAFG00020009770	SMG6	100	85.222	Canis_lupus_dingo
ENSODEG00000008038	SMG6	100	85.081	ENSCHIG00000021998	SMG6	100	85.081	Capra_hircus
ENSODEG00000008038	SMG6	100	85.433	ENSTSYG00000003406	SMG6	100	96.484	Carlito_syrichta
ENSODEG00000008038	SMG6	90	84.778	ENSCAPG00000016197	SMG6	99	83.841	Cavia_aperea
ENSODEG00000008038	SMG6	100	97.508	ENSCPOG00000014878	SMG6	96	97.508	Cavia_porcellus
ENSODEG00000008038	SMG6	100	84.188	ENSCCAG00000035801	SMG6	100	85.433	Cebus_capucinus
ENSODEG00000008038	SMG6	100	84.329	ENSCATG00000031956	SMG6	100	84.329	Cercocebus_atys
ENSODEG00000008038	SMG6	100	89.937	ENSCLAG00000006748	SMG6	95	96.053	Chinchilla_lanigera
ENSODEG00000008038	SMG6	100	84.469	ENSCSAG00000013800	SMG6	100	84.469	Chlorocebus_sabaeus
ENSODEG00000008038	SMG6	100	65.097	ENSCPBG00000020369	SMG6	100	65.651	Chrysemys_picta_bellii
ENSODEG00000008038	SMG6	98	85.047	ENSCANG00000031764	SMG6	100	96.289	Colobus_angolensis_palliatus
ENSODEG00000008038	SMG6	62	77.294	ENSCGRG00001019595	Smg6	100	77.294	Cricetulus_griseus_chok1gshd
ENSODEG00000008038	SMG6	98	81.653	ENSCGRG00000007782	Smg6	100	82.122	Cricetulus_griseus_crigri
ENSODEG00000008038	SMG6	98	46.460	ENSCSEG00000012757	smg6	83	46.549	Cynoglossus_semilaevis
ENSODEG00000008038	SMG6	81	54.070	ENSCVAG00000012789	smg6	86	47.619	Cyprinodon_variegatus
ENSODEG00000008038	SMG6	87	61.712	ENSDARG00000100481	smg6	96	61.970	Danio_rerio
ENSODEG00000008038	SMG6	100	85.644	ENSDNOG00000048283	SMG6	100	85.644	Dasypus_novemcinctus
ENSODEG00000008038	SMG6	100	92.127	ENSDORG00000016614	Smg6	100	92.127	Dipodomys_ordii
ENSODEG00000008038	SMG6	93	97.619	ENSETEG00000016790	SMG6	93	97.619	Echinops_telfairi
ENSODEG00000008038	SMG6	80	49.383	ENSEBUG00000005059	smg6	69	54.978	Eptatretus_burgeri
ENSODEG00000008038	SMG6	99	84.729	ENSEASG00005009318	SMG6	99	84.729	Equus_asinus_asinus
ENSODEG00000008038	SMG6	99	84.448	ENSECAG00000006519	SMG6	99	84.448	Equus_caballus
ENSODEG00000008038	SMG6	100	85.647	ENSEEUG00000003493	SMG6	96	85.647	Erinaceus_europaeus
ENSODEG00000008038	SMG6	81	59.412	ENSELUG00000005934	smg6	69	49.618	Esox_lucius
ENSODEG00000008038	SMG6	100	86.488	ENSFCAG00000028817	SMG6	100	86.488	Felis_catus
ENSODEG00000008038	SMG6	98	64.443	ENSFALG00000006538	SMG6	100	64.610	Ficedula_albicollis
ENSODEG00000008038	SMG6	100	88.318	ENSFDAG00000015106	SMG6	96	94.783	Fukomys_damarensis
ENSODEG00000008038	SMG6	98	46.712	ENSFHEG00000013282	smg6	89	46.491	Fundulus_heteroclitus
ENSODEG00000008038	SMG6	80	50.000	ENSGMOG00000019077	smg6	63	59.211	Gadus_morhua
ENSODEG00000008038	SMG6	100	83.515	ENSGALG00000003108	SMG6	94	83.515	Gallus_gallus
ENSODEG00000008038	SMG6	94	46.519	ENSGAFG00000000379	smg6	74	47.922	Gambusia_affinis
ENSODEG00000008038	SMG6	90	46.835	ENSGACG00000020521	smg6	99	46.771	Gasterosteus_aculeatus
ENSODEG00000008038	SMG6	98	64.848	ENSGAGG00000025617	SMG6	100	65.415	Gopherus_agassizii
ENSODEG00000008038	SMG6	100	84.751	ENSGGOG00000017156	SMG6	100	84.751	Gorilla_gorilla
ENSODEG00000008038	SMG6	81	52.907	ENSHBUG00000021311	smg6	76	48.483	Haplochromis_burtoni
ENSODEG00000008038	SMG6	100	87.843	ENSHGLG00000012882	SMG6	96	94.783	Heterocephalus_glaber_female
ENSODEG00000008038	SMG6	100	87.913	ENSHGLG00100017815	SMG6	96	94.783	Heterocephalus_glaber_male
ENSODEG00000008038	SMG6	81	55.233	ENSHCOG00000008761	smg6	83	50.668	Hippocampus_comes
ENSODEG00000008038	SMG6	89	61.493	ENSIPUG00000012493	smg6	80	47.548	Ictalurus_punctatus
ENSODEG00000008038	SMG6	100	97.508	ENSSTOG00000028127	SMG6	96	97.508	Ictidomys_tridecemlineatus
ENSODEG00000008038	SMG6	84	94.012	ENSJJAG00000015367	Smg6	95	78.411	Jaculus_jaculus
ENSODEG00000008038	SMG6	81	53.757	ENSKMAG00000000279	smg6	76	48.394	Kryptolebias_marmoratus
ENSODEG00000008038	SMG6	81	52.299	ENSLBEG00000002184	smg6	76	47.872	Labrus_bergylta
ENSODEG00000008038	SMG6	53	100.000	ENSLACG00000000806	-	90	100.000	Latimeria_chalumnae
ENSODEG00000008038	SMG6	85	74.556	ENSLACG00000003276	SMG6	100	80.472	Latimeria_chalumnae
ENSODEG00000008038	SMG6	84	59.763	ENSLOCG00000006448	smg6	99	48.939	Lepisosteus_oculatus
ENSODEG00000008038	SMG6	100	85.081	ENSLAFG00000001261	SMG6	100	85.081	Loxodonta_africana
ENSODEG00000008038	SMG6	100	84.469	ENSMFAG00000003394	SMG6	100	85.644	Macaca_fascicularis
ENSODEG00000008038	SMG6	100	84.469	ENSMMUG00000023161	SMG6	100	85.574	Macaca_mulatta
ENSODEG00000008038	SMG6	100	81.408	ENSMNEG00000044592	SMG6	100	80.986	Macaca_nemestrina
ENSODEG00000008038	SMG6	98	86.081	ENSMLEG00000029353	SMG6	99	86.081	Mandrillus_leucophaeus
ENSODEG00000008038	SMG6	81	57.310	ENSMAMG00000020119	smg6	79	49.646	Mastacembelus_armatus
ENSODEG00000008038	SMG6	81	52.907	ENSMZEG00005024736	smg6	76	48.365	Maylandia_zebra
ENSODEG00000008038	SMG6	72	78.182	ENSMGAG00000005401	-	93	78.182	Meleagris_gallopavo
ENSODEG00000008038	SMG6	84	92.857	ENSMAUG00000017203	-	98	92.952	Mesocricetus_auratus
ENSODEG00000008038	SMG6	100	87.262	ENSMICG00000012913	SMG6	100	87.262	Microcebus_murinus
ENSODEG00000008038	SMG6	84	94.048	ENSMOCG00000019924	-	99	92.241	Microtus_ochrogaster
ENSODEG00000008038	SMG6	98	60.366	ENSMMOG00000010883	smg6	95	61.479	Mola_mola
ENSODEG00000008038	SMG6	77	48.408	ENSMODG00000024395	-	99	40.234	Monodelphis_domestica
ENSODEG00000008038	SMG6	77	47.134	ENSMODG00000024410	-	99	41.211	Monodelphis_domestica
ENSODEG00000008038	SMG6	77	48.077	ENSMODG00000024463	-	99	41.683	Monodelphis_domestica
ENSODEG00000008038	SMG6	77	47.134	ENSMODG00000024460	-	99	41.602	Monodelphis_domestica
ENSODEG00000008038	SMG6	100	93.614	ENSMODG00000010622	SMG6	96	93.614	Monodelphis_domestica
ENSODEG00000008038	SMG6	81	53.488	ENSMALG00000001106	smg6	73	49.494	Monopterus_albus
ENSODEG00000008038	SMG6	100	85.222	MGP_CAROLIEiJ_G0016729	Smg6	95	93.833	Mus_caroli
ENSODEG00000008038	SMG6	100	85.011	ENSMUSG00000038290	Smg6	95	94.273	Mus_musculus
ENSODEG00000008038	SMG6	100	84.659	MGP_PahariEiJ_G0017866	Smg6	95	94.273	Mus_pahari
ENSODEG00000008038	SMG6	100	85.011	MGP_SPRETEiJ_G0017572	Smg6	96	93.450	Mus_spretus
ENSODEG00000008038	SMG6	100	85.574	ENSMPUG00000013046	SMG6	100	85.574	Mustela_putorius_furo
ENSODEG00000008038	SMG6	100	85.362	ENSMLUG00000005739	SMG6	100	85.362	Myotis_lucifugus
ENSODEG00000008038	SMG6	98	84.831	ENSNGAG00000007287	Smg6	99	89.787	Nannospalax_galili
ENSODEG00000008038	SMG6	81	55.357	ENSNBRG00000009511	smg6	79	58.692	Neolamprologus_brichardi
ENSODEG00000008038	SMG6	98	85.244	ENSNLEG00000017171	SMG6	100	96.875	Nomascus_leucogenys
ENSODEG00000008038	SMG6	98	92.368	ENSMEUG00000015804	SMG6	96	92.368	Notamacropus_eugenii
ENSODEG00000008038	SMG6	83	91.566	ENSOPRG00000000579	SMG6	74	97.368	Ochotona_princeps
ENSODEG00000008038	SMG6	100	45.060	ENSONIG00000005594	smg6	100	46.467	Oreochromis_niloticus
ENSODEG00000008038	SMG6	100	85.513	ENSOCUG00000013018	SMG6	100	85.875	Oryctolagus_cuniculus
ENSODEG00000008038	SMG6	87	46.882	ENSORLG00000003317	smg6	78	47.705	Oryzias_latipes
ENSODEG00000008038	SMG6	87	46.997	ENSORLG00020015343	smg6	78	47.598	Oryzias_latipes_hni
ENSODEG00000008038	SMG6	87	46.891	ENSORLG00015020454	smg6	78	47.787	Oryzias_latipes_hsok
ENSODEG00000008038	SMG6	81	53.179	ENSOMEG00000010838	smg6	75	48.113	Oryzias_melastigma
ENSODEG00000008038	SMG6	100	84.972	ENSOGAG00000004483	SMG6	100	86.217	Otolemur_garnettii
ENSODEG00000008038	SMG6	100	83.333	ENSOARG00000015076	SMG6	100	84.715	Ovis_aries
ENSODEG00000008038	SMG6	100	84.680	ENSPPAG00000043296	SMG6	100	84.680	Pan_paniscus
ENSODEG00000008038	SMG6	100	85.383	ENSPPRG00000014581	SMG6	100	86.559	Panthera_pardus
ENSODEG00000008038	SMG6	97	86.446	ENSPTIG00000008925	SMG6	100	97.070	Panthera_tigris_altaica
ENSODEG00000008038	SMG6	100	84.680	ENSPTRG00000008544	SMG6	100	97.070	Pan_troglodytes
ENSODEG00000008038	SMG6	100	84.399	ENSPANG00000024588	SMG6	100	85.574	Papio_anubis
ENSODEG00000008038	SMG6	88	81.176	ENSPSIG00000006660	SMG6	92	81.176	Pelodiscus_sinensis
ENSODEG00000008038	SMG6	100	44.562	ENSPMGG00000000844	smg6	100	44.269	Periophthalmus_magnuspinnatus
ENSODEG00000008038	SMG6	100	85.714	ENSPEMG00000020707	Smg6	97	94.273	Peromyscus_maniculatus_bairdii
ENSODEG00000008038	SMG6	100	45.406	ENSPFOG00000012035	smg6	100	46.066	Poecilia_formosa
ENSODEG00000008038	SMG6	82	50.595	ENSPLAG00000017660	smg6	86	46.835	Poecilia_latipinna
ENSODEG00000008038	SMG6	81	52.907	ENSPMEG00000000258	smg6	86	48.025	Poecilia_mexicana
ENSODEG00000008038	SMG6	81	54.070	ENSPREG00000010066	smg6	74	48.000	Poecilia_reticulata
ENSODEG00000008038	SMG6	100	83.345	ENSPPYG00000007790	SMG6	100	83.345	Pongo_abelii
ENSODEG00000008038	SMG6	100	79.480	ENSPCAG00000000552	SMG6	100	79.480	Procavia_capensis
ENSODEG00000008038	SMG6	100	85.875	ENSPCOG00000020925	SMG6	100	87.122	Propithecus_coquereli
ENSODEG00000008038	SMG6	85	100.000	ENSPVAG00000002159	SMG6	81	100.000	Pteropus_vampyrus
ENSODEG00000008038	SMG6	81	55.689	ENSPNYG00000024151	smg6	79	58.692	Pundamilia_nyererei
ENSODEG00000008038	SMG6	95	50.687	ENSPNAG00000015480	smg6	89	50.568	Pygocentrus_nattereri
ENSODEG00000008038	SMG6	100	85.222	ENSRNOG00000003041	Smg6	100	85.222	Rattus_norvegicus
ENSODEG00000008038	SMG6	100	84.118	ENSRBIG00000024746	SMG6	100	85.362	Rhinopithecus_bieti
ENSODEG00000008038	SMG6	100	86.753	ENSRROG00000030423	SMG6	100	95.898	Rhinopithecus_roxellana
ENSODEG00000008038	SMG6	100	87.355	ENSSBOG00000022518	SMG6	100	82.502	Saimiri_boliviensis_boliviensis
ENSODEG00000008038	SMG6	61	46.721	ENSSHAG00000000380	-	99	39.448	Sarcophilus_harrisii
ENSODEG00000008038	SMG6	98	77.419	ENSSHAG00000010045	SMG6	98	77.419	Sarcophilus_harrisii
ENSODEG00000008038	SMG6	81	57.143	ENSSFOG00015005436	smg6	87	44.269	Scleropages_formosus
ENSODEG00000008038	SMG6	98	46.850	ENSSMAG00000019777	smg6	89	46.320	Scophthalmus_maximus
ENSODEG00000008038	SMG6	88	47.307	ENSSDUG00000016412	smg6	80	47.144	Seriola_dumerili
ENSODEG00000008038	SMG6	81	52.601	ENSSLDG00000020747	smg6	83	45.999	Seriola_lalandi_dorsalis
ENSODEG00000008038	SMG6	99	63.864	ENSSPUG00000007152	SMG6	99	63.864	Sphenodon_punctatus
ENSODEG00000008038	SMG6	81	54.386	ENSSPAG00000015633	smg6	74	48.442	Stegastes_partitus
ENSODEG00000008038	SMG6	100	85.021	ENSSSCG00000017826	SMG6	100	85.021	Sus_scrofa
ENSODEG00000008038	SMG6	100	64.636	ENSTGUG00000005836	SMG6	100	64.846	Taeniopygia_guttata
ENSODEG00000008038	SMG6	82	59.613	ENSTRUG00000000358	smg6	77	59.309	Takifugu_rubripes
ENSODEG00000008038	SMG6	100	44.298	ENSTNIG00000016164	smg6	100	44.752	Tetraodon_nigroviridis
ENSODEG00000008038	SMG6	100	82.125	ENSTBEG00000011424	SMG6	100	82.125	Tupaia_belangeri
ENSODEG00000008038	SMG6	94	90.966	ENSTTRG00000001175	SMG6	89	90.966	Tursiops_truncatus
ENSODEG00000008038	SMG6	100	85.885	ENSUAMG00000025152	SMG6	100	85.755	Ursus_americanus
ENSODEG00000008038	SMG6	97	85.869	ENSUMAG00000009306	SMG6	100	85.869	Ursus_maritimus
ENSODEG00000008038	SMG6	84	97.030	ENSVPAG00000000225	SMG6	83	97.030	Vicugna_pacos
ENSODEG00000008038	SMG6	100	85.151	ENSVVUG00000021727	SMG6	100	85.151	Vulpes_vulpes
ENSODEG00000008038	SMG6	98	53.693	ENSXETG00000023799	SMG6	100	53.513	Xenopus_tropicalis
ENSODEG00000008038	SMG6	81	54.491	ENSXCOG00000009867	smg6	74	48.958	Xiphophorus_couchianus
ENSODEG00000008038	SMG6	94	47.627	ENSXMAG00000010321	smg6	85	48.270	Xiphophorus_maculatus