EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000008190 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm7 pseudogene
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 311 bases
Position: chrJH651567.1:5910628-5910938
Accession: 101564713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000010999	LSM	PF01423.22	9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000011155	-	288	-	ENSODEP00000010999	95 (aa)	-	-

Gene Model

Click here to download ENSODEG00000008190's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000008190's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000008190	-	100	72.816	ENSODEG00000018769	-	100	72.816
ENSODEG00000008190	-	100	79.612	ENSODEG00000013590	-	100	79.612

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000008190	-	100	79.612	ENSG00000130332	LSM7	100	87.755	Homo_sapiens
ENSODEG00000008190	-	82	73.256	ENSAPOG00000015573	lsm7	81	74.468	Acanthochromis_polyacanthus
ENSODEG00000008190	-	100	76.699	ENSAMEG00000005484	LSM7	100	76.699	Ailuropoda_melanoleuca
ENSODEG00000008190	-	95	74.490	ENSACIG00000006498	lsm7	78	74.490	Amphilophus_citrinellus
ENSODEG00000008190	-	89	74.194	ENSAOCG00000001077	lsm7	92	75.248	Amphiprion_ocellaris
ENSODEG00000008190	-	100	75.728	ENSAPEG00000000694	lsm7	100	75.728	Amphiprion_percula
ENSODEG00000008190	-	100	73.786	ENSAPEG00000024447	lsm7	92	75.248	Amphiprion_percula
ENSODEG00000008190	-	100	75.728	ENSATEG00000008557	lsm7	100	75.728	Anabas_testudineus
ENSODEG00000008190	-	100	79.612	ENSANAG00000037196	-	100	79.612	Aotus_nancymaae
ENSODEG00000008190	-	100	73.786	ENSANAG00000022222	-	100	73.786	Aotus_nancymaae
ENSODEG00000008190	-	100	74.757	ENSACLG00000021021	lsm7	100	74.757	Astatotilapia_calliptera
ENSODEG00000008190	-	100	75.728	ENSAMXG00000037622	lsm7	100	75.728	Astyanax_mexicanus
ENSODEG00000008190	-	100	79.612	ENSBTAG00000004521	LSM7	100	79.612	Bos_taurus
ENSODEG00000008190	-	97	41.000	WBGene00003081	lsm-7	96	41.000	Caenorhabditis_elegans
ENSODEG00000008190	-	69	58.108	ENSCJAG00000039713	-	90	58.108	Callithrix_jacchus
ENSODEG00000008190	-	98	78.218	ENSCAFG00000019409	LSM7	98	78.218	Canis_familiaris
ENSODEG00000008190	-	98	78.218	ENSCAFG00020018168	LSM7	74	78.218	Canis_lupus_dingo
ENSODEG00000008190	-	100	77.670	ENSCHIG00000023663	LSM7	100	77.670	Capra_hircus
ENSODEG00000008190	-	75	87.324	ENSCAPG00000014534	LSM7	100	87.324	Cavia_aperea
ENSODEG00000008190	-	100	79.612	ENSCPOG00000014025	LSM7	100	79.612	Cavia_porcellus
ENSODEG00000008190	-	98	79.208	ENSCCAG00000035456	LSM7	99	79.208	Cebus_capucinus
ENSODEG00000008190	-	100	79.612	ENSCATG00000023543	LSM7	100	79.612	Cercocebus_atys
ENSODEG00000008190	-	100	79.612	ENSCLAG00000011635	LSM7	100	79.612	Chinchilla_lanigera
ENSODEG00000008190	-	100	79.612	ENSCSAG00000011599	LSM7	100	79.612	Chlorocebus_sabaeus
ENSODEG00000008190	-	74	84.286	ENSCPBG00000021317	LSM7	74	84.286	Chrysemys_picta_bellii
ENSODEG00000008190	-	93	61.458	ENSCING00000022134	-	97	61.458	Ciona_intestinalis
ENSODEG00000008190	-	100	79.612	ENSCANG00000035525	LSM7	100	79.612	Colobus_angolensis_palliatus
ENSODEG00000008190	-	100	78.641	ENSCGRG00001000807	-	100	78.641	Cricetulus_griseus_chok1gshd
ENSODEG00000008190	-	81	69.412	ENSCGRG00001016005	-	89	69.412	Cricetulus_griseus_chok1gshd
ENSODEG00000008190	-	98	78.218	ENSCGRG00000014355	-	97	78.218	Cricetulus_griseus_crigri
ENSODEG00000008190	-	81	69.412	ENSCGRG00000006821	-	89	69.412	Cricetulus_griseus_crigri
ENSODEG00000008190	-	98	75.248	ENSCSEG00000014900	lsm7	86	75.248	Cynoglossus_semilaevis
ENSODEG00000008190	-	98	75.248	ENSCVAG00000021091	lsm7	94	75.248	Cyprinodon_variegatus
ENSODEG00000008190	-	100	75.728	ENSDARG00000058328	lsm7	100	75.728	Danio_rerio
ENSODEG00000008190	-	99	77.451	ENSDORG00000024460	Lsm7	100	77.451	Dipodomys_ordii
ENSODEG00000008190	-	94	60.204	FBgn0261068	LSm7	89	60.204	Drosophila_melanogaster
ENSODEG00000008190	-	98	76.238	ENSETEG00000012788	LSM7	99	76.238	Echinops_telfairi
ENSODEG00000008190	-	100	66.990	ENSEBUG00000016992	lsm7	99	66.990	Eptatretus_burgeri
ENSODEG00000008190	-	79	44.578	ENSEBUG00000010470	-	79	44.578	Eptatretus_burgeri
ENSODEG00000008190	-	100	75.728	ENSECAG00000001440	LSM7	66	75.728	Equus_caballus
ENSODEG00000008190	-	100	78.641	ENSFCAG00000003445	LSM7	100	78.641	Felis_catus
ENSODEG00000008190	-	98	76.238	ENSFALG00000011912	LSM7	100	76.238	Ficedula_albicollis
ENSODEG00000008190	-	93	78.125	ENSFDAG00000007661	LSM7	100	78.125	Fukomys_damarensis
ENSODEG00000008190	-	88	73.913	ENSFHEG00000006349	lsm7	90	75.248	Fundulus_heteroclitus
ENSODEG00000008190	-	100	71.845	ENSGMOG00000013320	lsm7	100	71.845	Gadus_morhua
ENSODEG00000008190	-	100	75.728	ENSGAFG00000013902	lsm7	100	75.728	Gambusia_affinis
ENSODEG00000008190	-	100	72.816	ENSGACG00000010390	lsm7	100	72.816	Gasterosteus_aculeatus
ENSODEG00000008190	-	100	79.612	ENSGGOG00000010172	LSM7	100	79.612	Gorilla_gorilla
ENSODEG00000008190	-	100	74.757	ENSHBUG00000004616	lsm7	100	74.757	Haplochromis_burtoni
ENSODEG00000008190	-	100	79.612	ENSHGLG00000010587	LSM7	100	79.612	Heterocephalus_glaber_female
ENSODEG00000008190	-	100	79.612	ENSHGLG00100000852	LSM7	100	79.612	Heterocephalus_glaber_male
ENSODEG00000008190	-	98	74.257	ENSHCOG00000020252	lsm7	100	74.257	Hippocampus_comes
ENSODEG00000008190	-	100	74.757	ENSIPUG00000024724	lsm7	100	74.757	Ictalurus_punctatus
ENSODEG00000008190	-	98	79.208	ENSSTOG00000028372	LSM7	99	79.208	Ictidomys_tridecemlineatus
ENSODEG00000008190	-	98	77.228	ENSJJAG00000001936	Lsm7	98	77.228	Jaculus_jaculus
ENSODEG00000008190	-	100	75.728	ENSKMAG00000022151	lsm7	100	75.728	Kryptolebias_marmoratus
ENSODEG00000008190	-	100	74.757	ENSLBEG00000005203	lsm7	100	74.757	Labrus_bergylta
ENSODEG00000008190	-	89	77.419	ENSLACG00000015700	LSM7	100	76.699	Latimeria_chalumnae
ENSODEG00000008190	-	100	75.728	ENSLOCG00000004356	lsm7	100	75.728	Lepisosteus_oculatus
ENSODEG00000008190	-	98	79.208	ENSLAFG00000029302	LSM7	98	79.208	Loxodonta_africana
ENSODEG00000008190	-	100	79.612	ENSMFAG00000044572	LSM7	100	79.612	Macaca_fascicularis
ENSODEG00000008190	-	100	79.612	ENSMMUG00000000452	LSM7	100	79.612	Macaca_mulatta
ENSODEG00000008190	-	100	79.612	ENSMNEG00000004393	LSM7	100	79.612	Macaca_nemestrina
ENSODEG00000008190	-	100	79.612	ENSMLEG00000030852	LSM7	100	79.612	Mandrillus_leucophaeus
ENSODEG00000008190	-	100	74.757	ENSMAMG00000005410	lsm7	100	74.757	Mastacembelus_armatus
ENSODEG00000008190	-	100	74.757	ENSMZEG00005028055	lsm7	100	74.757	Maylandia_zebra
ENSODEG00000008190	-	100	77.670	ENSMGAG00000000750	LSM7	89	77.670	Meleagris_gallopavo
ENSODEG00000008190	-	100	78.641	ENSMAUG00000009276	Lsm7	100	78.641	Mesocricetus_auratus
ENSODEG00000008190	-	100	79.612	ENSMICG00000028619	-	100	79.612	Microcebus_murinus
ENSODEG00000008190	-	100	78.641	ENSMICG00000009988	-	100	78.641	Microcebus_murinus
ENSODEG00000008190	-	100	78.641	ENSMOCG00000016925	Lsm7	100	78.641	Microtus_ochrogaster
ENSODEG00000008190	-	100	75.728	ENSMMOG00000019645	lsm7	98	75.728	Mola_mola
ENSODEG00000008190	-	100	78.641	ENSMODG00000004722	LSM7	100	78.641	Monodelphis_domestica
ENSODEG00000008190	-	100	74.757	ENSMALG00000014511	lsm7	79	74.757	Monopterus_albus
ENSODEG00000008190	-	100	76.699	MGP_CAROLIEiJ_G0015607	Lsm7	100	76.699	Mus_caroli
ENSODEG00000008190	-	100	76.699	ENSMUSG00000035215	Lsm7	100	76.699	Mus_musculus
ENSODEG00000008190	-	100	76.699	MGP_PahariEiJ_G0031020	Lsm7	100	76.699	Mus_pahari
ENSODEG00000008190	-	100	76.699	MGP_SPRETEiJ_G0016425	Lsm7	100	76.699	Mus_spretus
ENSODEG00000008190	-	100	76.699	ENSMLUG00000013097	-	100	76.699	Myotis_lucifugus
ENSODEG00000008190	-	100	72.816	ENSMLUG00000024002	-	94	72.816	Myotis_lucifugus
ENSODEG00000008190	-	100	77.670	ENSNGAG00000021637	Lsm7	100	77.670	Nannospalax_galili
ENSODEG00000008190	-	98	74.257	ENSNBRG00000015770	lsm7	87	74.257	Neolamprologus_brichardi
ENSODEG00000008190	-	91	73.404	ENSNBRG00000001237	-	82	72.816	Neolamprologus_brichardi
ENSODEG00000008190	-	100	79.612	ENSNLEG00000002265	LSM7	100	79.612	Nomascus_leucogenys
ENSODEG00000008190	-	100	74.757	ENSONIG00000001801	lsm7	89	74.757	Oreochromis_niloticus
ENSODEG00000008190	-	100	75.728	ENSORLG00000023951	lsm7	100	75.728	Oryzias_latipes
ENSODEG00000008190	-	100	75.728	ENSORLG00020022226	lsm7	100	75.728	Oryzias_latipes_hni
ENSODEG00000008190	-	100	73.786	ENSORLG00015020044	lsm7	94	75.248	Oryzias_latipes_hsok
ENSODEG00000008190	-	100	75.728	ENSOMEG00000012806	lsm7	100	75.728	Oryzias_melastigma
ENSODEG00000008190	-	100	69.903	ENSOGAG00000024373	-	100	69.903	Otolemur_garnettii
ENSODEG00000008190	-	98	77.228	ENSOGAG00000000144	-	99	77.228	Otolemur_garnettii
ENSODEG00000008190	-	100	77.670	ENSOARG00000014013	LSM7	100	77.670	Ovis_aries
ENSODEG00000008190	-	100	79.612	ENSPPAG00000026500	LSM7	100	79.612	Pan_paniscus
ENSODEG00000008190	-	100	78.641	ENSPPRG00000008624	LSM7	100	78.641	Panthera_pardus
ENSODEG00000008190	-	89	77.419	ENSPTIG00000016252	LSM7	98	78.218	Panthera_tigris_altaica
ENSODEG00000008190	-	100	79.612	ENSPTRG00000010233	LSM7	100	79.612	Pan_troglodytes
ENSODEG00000008190	-	100	79.612	ENSPANG00000020668	LSM7	100	79.612	Papio_anubis
ENSODEG00000008190	-	100	76.699	ENSPKIG00000011325	lsm7	100	76.699	Paramormyrops_kingsleyae
ENSODEG00000008190	-	89	76.344	ENSPSIG00000017149	LSM7	89	77.228	Pelodiscus_sinensis
ENSODEG00000008190	-	100	75.728	ENSPMGG00000006498	lsm7	100	75.728	Periophthalmus_magnuspinnatus
ENSODEG00000008190	-	100	78.641	ENSPCIG00000030454	LSM7	100	78.641	Phascolarctos_cinereus
ENSODEG00000008190	-	100	72.816	ENSPFOG00000012467	lsm7	91	72.816	Poecilia_formosa
ENSODEG00000008190	-	100	72.816	ENSPLAG00000000252	lsm7	94	73.529	Poecilia_latipinna
ENSODEG00000008190	-	100	72.816	ENSPMEG00000000587	lsm7	94	73.529	Poecilia_mexicana
ENSODEG00000008190	-	58	61.905	ENSPREG00000016718	lsm7	50	61.905	Poecilia_reticulata
ENSODEG00000008190	-	100	79.612	ENSPCOG00000017177	LSM7	100	79.612	Propithecus_coquereli
ENSODEG00000008190	-	100	74.757	ENSPNYG00000006938	lsm7	100	74.757	Pundamilia_nyererei
ENSODEG00000008190	-	100	75.728	ENSPNAG00000010141	lsm7	100	75.728	Pygocentrus_nattereri
ENSODEG00000008190	-	100	77.670	ENSRNOG00000019552	Lsm7	100	77.670	Rattus_norvegicus
ENSODEG00000008190	-	100	79.612	ENSRBIG00000035978	LSM7	100	79.612	Rhinopithecus_bieti
ENSODEG00000008190	-	100	79.612	ENSRROG00000034044	LSM7	100	79.612	Rhinopithecus_roxellana
ENSODEG00000008190	-	81	38.636	YNL147W	-	77	38.636	Saccharomyces_cerevisiae
ENSODEG00000008190	-	100	79.612	ENSSBOG00000034899	LSM7	100	79.612	Saimiri_boliviensis_boliviensis
ENSODEG00000008190	-	100	74.757	ENSSFOG00015006728	lsm7	100	74.757	Scleropages_formosus
ENSODEG00000008190	-	100	73.786	ENSSMAG00000004195	lsm7	93	75.248	Scophthalmus_maximus
ENSODEG00000008190	-	100	75.728	ENSSDUG00000001863	lsm7	100	75.728	Seriola_dumerili
ENSODEG00000008190	-	100	75.728	ENSSLDG00000016339	lsm7	100	75.728	Seriola_lalandi_dorsalis
ENSODEG00000008190	-	100	75.728	ENSSPAG00000015221	lsm7	100	75.728	Stegastes_partitus
ENSODEG00000008190	-	98	79.208	ENSSSCG00000013463	LSM7	99	79.208	Sus_scrofa
ENSODEG00000008190	-	98	76.238	ENSTGUG00000000067	LSM7	100	76.238	Taeniopygia_guttata
ENSODEG00000008190	-	100	75.728	ENSTRUG00000022913	lsm7	100	75.728	Takifugu_rubripes
ENSODEG00000008190	-	100	75.728	ENSTNIG00000015525	lsm7	100	75.728	Tetraodon_nigroviridis
ENSODEG00000008190	-	74	78.571	ENSTBEG00000016602	LSM7	100	78.571	Tupaia_belangeri
ENSODEG00000008190	-	100	76.699	ENSUAMG00000000912	LSM7	86	76.699	Ursus_americanus
ENSODEG00000008190	-	89	77.419	ENSUMAG00000006556	LSM7	79	78.218	Ursus_maritimus
ENSODEG00000008190	-	75	85.915	ENSVVUG00000002640	LSM7	65	85.915	Vulpes_vulpes
ENSODEG00000008190	-	98	75.248	ENSXETG00000022166	lsm7	100	75.248	Xenopus_tropicalis
ENSODEG00000008190	-	99	74.510	ENSXCOG00000002572	lsm7	100	74.510	Xiphophorus_couchianus
ENSODEG00000008190	-	100	75.728	ENSXMAG00000018630	lsm7	100	75.728	Xiphophorus_maculatus