EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000008366 (Gene tree)
Gene ID: 101585444
Gene Symbol: SNRNP200
Alias: -
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 29957 bases
Position: chrJH651567.1:3870967-3900923
Accession: 101585444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000011248	ResIII	PF04851.15	9.1e-26	1	2
ENSODEP00000011248	ResIII	PF04851.15	9.1e-26	2	2
ENSODEP00000011247	ResIII	PF04851.15	9.2e-26	1	2
ENSODEP00000011247	ResIII	PF04851.15	9.2e-26	2	2
ENSODEP00000011248	DEAD	PF00270.29	2.4e-52	1	2
ENSODEP00000011248	DEAD	PF00270.29	2.4e-52	2	2
ENSODEP00000011247	DEAD	PF00270.29	2.4e-52	1	2
ENSODEP00000011247	DEAD	PF00270.29	2.4e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000011406	SNRNP200-202	6393	-	ENSODEP00000011248	2130 (aa)	-	-
ENSODET00000011405	SNRNP200-201	6496	XM_004633161	ENSODEP00000011247	2136 (aa)	XP_004633218	UPI000333D49B

Gene Model

Click here to download ENSODEG00000008366's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000008366's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000008366	SNRNP200	86	42.576	ENSODEG00000000069	ASCC3	80	44.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000008366	SNRNP200	100	99.579	ENSG00000144028	SNRNP200	100	99.579	Homo_sapiens
ENSODEG00000008366	SNRNP200	99	90.794	ENSAPOG00000010223	snrnp200	99	90.684	Acanthochromis_polyacanthus
ENSODEG00000008366	SNRNP200	100	99.532	ENSAMEG00000008996	SNRNP200	100	99.532	Ailuropoda_melanoleuca
ENSODEG00000008366	SNRNP200	97	90.043	ENSACIG00000001764	snrnp200	98	90.043	Amphilophus_citrinellus
ENSODEG00000008366	SNRNP200	99	90.700	ENSAOCG00000024593	snrnp200	100	89.829	Amphiprion_ocellaris
ENSODEG00000008366	SNRNP200	97	89.882	ENSAPEG00000012554	snrnp200	100	89.882	Amphiprion_percula
ENSODEG00000008366	SNRNP200	99	90.653	ENSATEG00000022522	snrnp200	99	90.543	Anabas_testudineus
ENSODEG00000008366	SNRNP200	99	97.595	ENSAPLG00000004313	SNRNP200	100	97.595	Anas_platyrhynchos
ENSODEG00000008366	SNRNP200	99	97.264	ENSACAG00000000434	SNRNP200	100	97.264	Anolis_carolinensis
ENSODEG00000008366	SNRNP200	100	96.347	ENSANAG00000036625	SNRNP200	100	96.347	Aotus_nancymaae
ENSODEG00000008366	SNRNP200	99	90.418	ENSACLG00000011188	snrnp200	99	90.309	Astatotilapia_calliptera
ENSODEG00000008366	SNRNP200	99	90.371	ENSAMXG00000005684	snrnp200	99	90.262	Astyanax_mexicanus
ENSODEG00000008366	SNRNP200	100	99.157	ENSBTAG00000000848	SNRNP200	100	99.157	Bos_taurus
ENSODEG00000008366	SNRNP200	100	99.532	ENSCJAG00000007514	SNRNP200	100	99.532	Callithrix_jacchus
ENSODEG00000008366	SNRNP200	100	98.740	ENSCAFG00020019979	SNRNP200	100	99.533	Canis_lupus_dingo
ENSODEG00000008366	SNRNP200	100	99.345	ENSCHIG00000020611	SNRNP200	100	99.345	Capra_hircus
ENSODEG00000008366	SNRNP200	100	99.625	ENSTSYG00000010467	SNRNP200	100	99.625	Carlito_syrichta
ENSODEG00000008366	SNRNP200	99	99.577	ENSCAPG00000017234	SNRNP200	99	99.577	Cavia_aperea
ENSODEG00000008366	SNRNP200	100	99.860	ENSCPOG00000006776	SNRNP200	100	99.860	Cavia_porcellus
ENSODEG00000008366	SNRNP200	100	99.532	ENSCCAG00000033962	SNRNP200	100	99.532	Cebus_capucinus
ENSODEG00000008366	SNRNP200	100	99.579	ENSCATG00000015790	SNRNP200	100	99.579	Cercocebus_atys
ENSODEG00000008366	SNRNP200	100	99.906	ENSCLAG00000004116	SNRNP200	100	99.906	Chinchilla_lanigera
ENSODEG00000008366	SNRNP200	100	99.532	ENSCSAG00000017369	SNRNP200	100	99.532	Chlorocebus_sabaeus
ENSODEG00000008366	SNRNP200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSODEG00000008366	SNRNP200	100	97.616	ENSCPBG00000022571	SNRNP200	100	97.616	Chrysemys_picta_bellii
ENSODEG00000008366	SNRNP200	99	76.413	ENSCING00000005082	-	99	76.553	Ciona_intestinalis
ENSODEG00000008366	SNRNP200	100	94.068	ENSCANG00000033932	SNRNP200	100	99.502	Colobus_angolensis_palliatus
ENSODEG00000008366	SNRNP200	100	99.532	ENSCGRG00001022610	Snrnp200	100	99.532	Cricetulus_griseus_chok1gshd
ENSODEG00000008366	SNRNP200	100	98.971	ENSCGRG00000016472	Snrnp200	100	98.971	Cricetulus_griseus_crigri
ENSODEG00000008366	SNRNP200	100	89.841	ENSCSEG00000016399	snrnp200	100	89.841	Cynoglossus_semilaevis
ENSODEG00000008366	SNRNP200	100	85.487	ENSCVAG00000017631	snrnp200	99	85.487	Cyprinodon_variegatus
ENSODEG00000008366	SNRNP200	100	90.122	ENSDARG00000077536	snrnp200	99	90.122	Danio_rerio
ENSODEG00000008366	SNRNP200	100	98.127	ENSDNOG00000011227	SNRNP200	100	98.127	Dasypus_novemcinctus
ENSODEG00000008366	SNRNP200	100	96.821	ENSDORG00000005861	Snrnp200	100	96.821	Dipodomys_ordii
ENSODEG00000008366	SNRNP200	100	74.209	FBgn0263599	l(3)72Ab	99	74.115	Drosophila_melanogaster
ENSODEG00000008366	SNRNP200	95	99.311	ENSETEG00000000162	SNRNP200	74	99.311	Echinops_telfairi
ENSODEG00000008366	SNRNP200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
ENSODEG00000008366	SNRNP200	100	98.508	ENSEASG00005001884	SNRNP200	100	98.508	Equus_asinus_asinus
ENSODEG00000008366	SNRNP200	100	99.625	ENSECAG00000019675	SNRNP200	100	99.625	Equus_caballus
ENSODEG00000008366	SNRNP200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSODEG00000008366	SNRNP200	99	90.700	ENSELUG00000018948	snrnp200	99	90.590	Esox_lucius
ENSODEG00000008366	SNRNP200	100	99.579	ENSFCAG00000010699	SNRNP200	100	99.579	Felis_catus
ENSODEG00000008366	SNRNP200	94	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSODEG00000008366	SNRNP200	100	99.766	ENSFDAG00000004683	SNRNP200	100	99.766	Fukomys_damarensis
ENSODEG00000008366	SNRNP200	100	87.734	ENSFHEG00000003786	snrnp200	99	87.734	Fundulus_heteroclitus
ENSODEG00000008366	SNRNP200	100	89.626	ENSGMOG00000004881	snrnp200	99	89.579	Gadus_morhua
ENSODEG00000008366	SNRNP200	100	87.968	ENSGAFG00000010807	snrnp200	99	87.968	Gambusia_affinis
ENSODEG00000008366	SNRNP200	100	89.865	ENSGACG00000011474	snrnp200	99	89.771	Gasterosteus_aculeatus
ENSODEG00000008366	SNRNP200	95	97.992	ENSGAGG00000016069	SNRNP200	99	97.532	Gopherus_agassizii
ENSODEG00000008366	SNRNP200	100	99.579	ENSGGOG00000005174	SNRNP200	100	99.579	Gorilla_gorilla
ENSODEG00000008366	SNRNP200	97	87.620	ENSHBUG00000011322	snrnp200	99	87.667	Haplochromis_burtoni
ENSODEG00000008366	SNRNP200	100	99.860	ENSHGLG00000006654	SNRNP200	100	99.860	Heterocephalus_glaber_female
ENSODEG00000008366	SNRNP200	100	99.860	ENSHGLG00100018594	SNRNP200	100	99.860	Heterocephalus_glaber_male
ENSODEG00000008366	SNRNP200	100	99.625	ENSSTOG00000016351	SNRNP200	100	99.625	Ictidomys_tridecemlineatus
ENSODEG00000008366	SNRNP200	100	99.391	ENSJJAG00000023659	Snrnp200	100	99.391	Jaculus_jaculus
ENSODEG00000008366	SNRNP200	100	87.401	ENSKMAG00000003665	snrnp200	99	87.401	Kryptolebias_marmoratus
ENSODEG00000008366	SNRNP200	100	90.122	ENSLBEG00000021585	snrnp200	99	90.122	Labrus_bergylta
ENSODEG00000008366	SNRNP200	82	94.607	ENSLACG00000000226	SNRNP200	99	94.607	Latimeria_chalumnae
ENSODEG00000008366	SNRNP200	100	92.182	ENSLOCG00000015198	snrnp200	99	92.182	Lepisosteus_oculatus
ENSODEG00000008366	SNRNP200	100	99.438	ENSLAFG00000015626	SNRNP200	100	99.438	Loxodonta_africana
ENSODEG00000008366	SNRNP200	100	99.532	ENSMFAG00000040174	SNRNP200	100	99.532	Macaca_fascicularis
ENSODEG00000008366	SNRNP200	100	99.532	ENSMMUG00000023261	SNRNP200	100	99.532	Macaca_mulatta
ENSODEG00000008366	SNRNP200	100	99.485	ENSMNEG00000032398	SNRNP200	100	99.485	Macaca_nemestrina
ENSODEG00000008366	SNRNP200	100	99.579	ENSMLEG00000019083	SNRNP200	100	99.579	Mandrillus_leucophaeus
ENSODEG00000008366	SNRNP200	100	90.080	ENSMAMG00000007851	snrnp200	99	90.033	Mastacembelus_armatus
ENSODEG00000008366	SNRNP200	97	87.620	ENSMZEG00005010787	snrnp200	99	87.667	Maylandia_zebra
ENSODEG00000008366	SNRNP200	97	97.146	ENSMGAG00000001831	SNRNP200	100	97.146	Meleagris_gallopavo
ENSODEG00000008366	SNRNP200	100	99.485	ENSMAUG00000011825	Snrnp200	100	99.485	Mesocricetus_auratus
ENSODEG00000008366	SNRNP200	100	99.532	ENSMICG00000004710	SNRNP200	100	99.532	Microcebus_murinus
ENSODEG00000008366	SNRNP200	100	97.089	ENSMOCG00000011814	Snrnp200	100	97.089	Microtus_ochrogaster
ENSODEG00000008366	SNRNP200	99	88.868	ENSMMOG00000014167	snrnp200	99	88.764	Mola_mola
ENSODEG00000008366	SNRNP200	100	98.830	ENSMODG00000008475	SNRNP200	100	98.830	Monodelphis_domestica
ENSODEG00000008366	SNRNP200	99	90.653	ENSMALG00000001973	snrnp200	99	90.543	Monopterus_albus
ENSODEG00000008366	SNRNP200	100	99.391	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.391	Mus_caroli
ENSODEG00000008366	SNRNP200	100	99.438	ENSMUSG00000003660	Snrnp200	100	99.438	Mus_musculus
ENSODEG00000008366	SNRNP200	100	99.485	MGP_PahariEiJ_G0025695	Snrnp200	100	99.485	Mus_pahari
ENSODEG00000008366	SNRNP200	100	99.438	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.438	Mus_spretus
ENSODEG00000008366	SNRNP200	100	99.579	ENSMPUG00000008949	SNRNP200	100	99.579	Mustela_putorius_furo
ENSODEG00000008366	SNRNP200	100	99.018	ENSMLUG00000010493	SNRNP200	100	99.018	Myotis_lucifugus
ENSODEG00000008366	SNRNP200	100	95.272	ENSMLUG00000027511	-	100	95.272	Myotis_lucifugus
ENSODEG00000008366	SNRNP200	100	99.579	ENSNGAG00000021993	Snrnp200	100	99.579	Nannospalax_galili
ENSODEG00000008366	SNRNP200	90	90.252	ENSNBRG00000017960	snrnp200	98	90.145	Neolamprologus_brichardi
ENSODEG00000008366	SNRNP200	100	94.933	ENSNLEG00000000025	SNRNP200	100	96.012	Nomascus_leucogenys
ENSODEG00000008366	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSODEG00000008366	SNRNP200	100	95.646	ENSOPRG00000015464	SNRNP200	100	95.646	Ochotona_princeps
ENSODEG00000008366	SNRNP200	99	90.371	ENSONIG00000010714	snrnp200	99	90.262	Oreochromis_niloticus
ENSODEG00000008366	SNRNP200	100	99.438	ENSOCUG00000009864	SNRNP200	100	99.438	Oryctolagus_cuniculus
ENSODEG00000008366	SNRNP200	100	90.169	ENSORLG00000012286	snrnp200	100	90.169	Oryzias_latipes
ENSODEG00000008366	SNRNP200	100	90.215	ENSORLG00020004648	snrnp200	100	90.215	Oryzias_latipes_hni
ENSODEG00000008366	SNRNP200	100	90.169	ENSORLG00015019114	snrnp200	100	90.185	Oryzias_latipes_hsok
ENSODEG00000008366	SNRNP200	99	90.418	ENSOMEG00000011834	snrnp200	99	90.309	Oryzias_melastigma
ENSODEG00000008366	SNRNP200	100	99.625	ENSOGAG00000006879	SNRNP200	100	99.625	Otolemur_garnettii
ENSODEG00000008366	SNRNP200	100	98.315	ENSOARG00000013949	SNRNP200	100	98.315	Ovis_aries
ENSODEG00000008366	SNRNP200	100	99.579	ENSPPAG00000041559	SNRNP200	100	99.579	Pan_paniscus
ENSODEG00000008366	SNRNP200	100	99.579	ENSPPRG00000004435	SNRNP200	100	99.579	Panthera_pardus
ENSODEG00000008366	SNRNP200	100	99.110	ENSPTIG00000006380	SNRNP200	100	99.110	Panthera_tigris_altaica
ENSODEG00000008366	SNRNP200	100	99.579	ENSPTRG00000012230	SNRNP200	100	99.579	Pan_troglodytes
ENSODEG00000008366	SNRNP200	100	99.625	ENSPANG00000006017	SNRNP200	100	99.625	Papio_anubis
ENSODEG00000008366	SNRNP200	100	91.011	ENSPKIG00000014762	snrnp200	99	91.011	Paramormyrops_kingsleyae
ENSODEG00000008366	SNRNP200	100	96.584	ENSPSIG00000008580	SNRNP200	100	96.584	Pelodiscus_sinensis
ENSODEG00000008366	SNRNP200	100	98.783	ENSPCIG00000023050	SNRNP200	100	98.783	Phascolarctos_cinereus
ENSODEG00000008366	SNRNP200	100	90.267	ENSPFOG00000015110	snrnp200	99	90.267	Poecilia_formosa
ENSODEG00000008366	SNRNP200	97	90.000	ENSPLAG00000006711	snrnp200	99	90.000	Poecilia_latipinna
ENSODEG00000008366	SNRNP200	97	89.945	ENSPMEG00000021166	snrnp200	99	89.945	Poecilia_mexicana
ENSODEG00000008366	SNRNP200	100	90.356	ENSPREG00000008875	snrnp200	99	90.356	Poecilia_reticulata
ENSODEG00000008366	SNRNP200	100	99.579	ENSPPYG00000012068	SNRNP200	100	99.579	Pongo_abelii
ENSODEG00000008366	SNRNP200	97	97.436	ENSPCAG00000008536	SNRNP200	89	97.436	Procavia_capensis
ENSODEG00000008366	SNRNP200	100	99.579	ENSPCOG00000024608	SNRNP200	100	99.579	Propithecus_coquereli
ENSODEG00000008366	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSODEG00000008366	SNRNP200	99	85.902	ENSPNYG00000017476	snrnp200	99	85.808	Pundamilia_nyererei
ENSODEG00000008366	SNRNP200	100	85.861	ENSPNAG00000010998	snrnp200	99	85.861	Pygocentrus_nattereri
ENSODEG00000008366	SNRNP200	100	99.485	ENSRNOG00000012157	Snrnp200	100	99.485	Rattus_norvegicus
ENSODEG00000008366	SNRNP200	100	99.579	ENSRBIG00000044690	-	100	99.579	Rhinopithecus_bieti
ENSODEG00000008366	SNRNP200	100	99.579	ENSRROG00000037952	-	100	99.579	Rhinopithecus_roxellana
ENSODEG00000008366	SNRNP200	100	99.532	ENSSBOG00000035471	SNRNP200	100	99.532	Saimiri_boliviensis_boliviensis
ENSODEG00000008366	SNRNP200	97	98.694	ENSSHAG00000000758	SNRNP200	100	98.694	Sarcophilus_harrisii
ENSODEG00000008366	SNRNP200	99	91.451	ENSSFOG00015018826	snrnp200	99	91.339	Scleropages_formosus
ENSODEG00000008366	SNRNP200	99	90.324	ENSSMAG00000005463	snrnp200	99	90.215	Scophthalmus_maximus
ENSODEG00000008366	SNRNP200	99	90.653	ENSSDUG00000021410	snrnp200	99	90.543	Seriola_dumerili
ENSODEG00000008366	SNRNP200	99	90.512	ENSSLDG00000010884	snrnp200	99	90.403	Seriola_lalandi_dorsalis
ENSODEG00000008366	SNRNP200	95	98.928	ENSSARG00000010728	SNRNP200	96	98.928	Sorex_araneus
ENSODEG00000008366	SNRNP200	100	97.331	ENSSPUG00000003726	-	100	97.331	Sphenodon_punctatus
ENSODEG00000008366	SNRNP200	99	90.700	ENSSPAG00000001842	snrnp200	99	90.590	Stegastes_partitus
ENSODEG00000008366	SNRNP200	100	99.391	ENSSSCG00000008127	SNRNP200	100	99.391	Sus_scrofa
ENSODEG00000008366	SNRNP200	99	87.853	ENSTGUG00000014475	-	100	87.853	Taeniopygia_guttata
ENSODEG00000008366	SNRNP200	99	90.277	ENSTRUG00000001307	snrnp200	99	90.169	Takifugu_rubripes
ENSODEG00000008366	SNRNP200	100	85.657	ENSTNIG00000004320	snrnp200	100	85.657	Tetraodon_nigroviridis
ENSODEG00000008366	SNRNP200	83	100.000	ENSTBEG00000003329	-	67	100.000	Tupaia_belangeri
ENSODEG00000008366	SNRNP200	100	99.204	ENSTTRG00000004983	SNRNP200	100	99.204	Tursiops_truncatus
ENSODEG00000008366	SNRNP200	75	92.539	ENSUAMG00000008395	-	95	92.539	Ursus_americanus
ENSODEG00000008366	SNRNP200	100	99.579	ENSUMAG00000012385	SNRNP200	100	99.579	Ursus_maritimus
ENSODEG00000008366	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSODEG00000008366	SNRNP200	100	99.346	ENSVVUG00000026247	SNRNP200	100	99.346	Vulpes_vulpes
ENSODEG00000008366	SNRNP200	100	94.203	ENSXETG00000001243	snrnp200	100	94.203	Xenopus_tropicalis
ENSODEG00000008366	SNRNP200	97	90.257	ENSXMAG00000002058	snrnp200	98	90.257	Xiphophorus_maculatus