EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000008607 (Gene tree)
Gene ID: 101567022
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 119733 bases
Position: chrJH651529.1:21772981-21892713
Accession: 101567022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000011580	R3H	PF01424.22	2.9e-12	1	1
ENSODEP00000011578	R3H	PF01424.22	5.7e-12	1	1
ENSODEP00000011579	R3H	PF01424.22	1.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000011738	R3HDM1-201	1455	-	ENSODEP00000011578	485 (aa)	-	-
ENSODET00000011739	R3HDM1-202	3360	XM_004626411	ENSODEP00000011579	1119 (aa)	-	-
ENSODET00000011741	R3HDM1-204	1110	-	ENSODEP00000011581	370 (aa)	-	-
ENSODET00000011740	R3HDM1-203	861	-	ENSODEP00000011580	287 (aa)	-	-

Gene Model

Click here to download ENSODEG00000008607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000008607's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000008607	R3HDM1	80	65.432	ENSODEG00000004233	ARPP21	98	47.426

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000008607	R3HDM1	99	94.700	ENSG00000048991	R3HDM1	97	100.000	Homo_sapiens
ENSODEG00000008607	R3HDM1	100	64.214	ENSAPOG00000020850	r3hdm1	97	48.100	Acanthochromis_polyacanthus
ENSODEG00000008607	R3HDM1	100	91.362	ENSAMEG00000014886	R3HDM1	100	89.437	Ailuropoda_melanoleuca
ENSODEG00000008607	R3HDM1	89	55.357	ENSACIG00000018791	-	90	54.444	Amphilophus_citrinellus
ENSODEG00000008607	R3HDM1	100	63.880	ENSAOCG00000005192	r3hdm1	99	47.544	Amphiprion_ocellaris
ENSODEG00000008607	R3HDM1	100	59.386	ENSAPEG00000016108	r3hdm1	99	45.412	Amphiprion_percula
ENSODEG00000008607	R3HDM1	100	58.562	ENSATEG00000000232	r3hdm1	99	45.065	Anabas_testudineus
ENSODEG00000008607	R3HDM1	100	78.073	ENSAPLG00000015231	R3HDM1	100	74.605	Anas_platyrhynchos
ENSODEG00000008607	R3HDM1	100	76.080	ENSACAG00000001676	R3HDM1	100	76.290	Anolis_carolinensis
ENSODEG00000008607	R3HDM1	100	93.827	ENSANAG00000035334	R3HDM1	100	88.303	Aotus_nancymaae
ENSODEG00000008607	R3HDM1	85	62.061	ENSACLG00000027282	r3hdm1	94	46.604	Astatotilapia_calliptera
ENSODEG00000008607	R3HDM1	79	57.759	ENSAMXG00000020587	arpp21	84	59.109	Astyanax_mexicanus
ENSODEG00000008607	R3HDM1	83	72.358	ENSAMXG00000003536	r3hdm1	94	56.567	Astyanax_mexicanus
ENSODEG00000008607	R3HDM1	99	68.627	ENSAMXG00000012861	R3HDM1	100	71.635	Astyanax_mexicanus
ENSODEG00000008607	R3HDM1	100	90.765	ENSBTAG00000013302	R3HDM1	100	91.293	Bos_taurus
ENSODEG00000008607	R3HDM1	100	93.827	ENSCJAG00000011718	R3HDM1	100	88.204	Callithrix_jacchus
ENSODEG00000008607	R3HDM1	100	91.362	ENSCAFG00000005075	R3HDM1	100	89.613	Canis_familiaris
ENSODEG00000008607	R3HDM1	100	92.593	ENSCAFG00020016119	R3HDM1	100	92.518	Canis_lupus_dingo
ENSODEG00000008607	R3HDM1	100	91.029	ENSCHIG00000020851	R3HDM1	100	91.293	Capra_hircus
ENSODEG00000008607	R3HDM1	100	85.017	ENSCAPG00000013043	-	100	85.017	Cavia_aperea
ENSODEG00000008607	R3HDM1	100	95.122	ENSCPOG00000012784	R3HDM1	100	95.122	Cavia_porcellus
ENSODEG00000008607	R3HDM1	100	94.033	ENSCCAG00000027199	R3HDM1	100	88.380	Cebus_capucinus
ENSODEG00000008607	R3HDM1	100	90.853	ENSCATG00000023642	R3HDM1	100	91.029	Cercocebus_atys
ENSODEG00000008607	R3HDM1	100	97.909	ENSCLAG00000007962	R3HDM1	100	97.909	Chinchilla_lanigera
ENSODEG00000008607	R3HDM1	100	90.765	ENSCSAG00000016356	R3HDM1	100	90.941	Chlorocebus_sabaeus
ENSODEG00000008607	R3HDM1	87	76.409	ENSCHOG00000013638	R3HDM1	91	75.491	Choloepus_hoffmanni
ENSODEG00000008607	R3HDM1	87	80.471	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSODEG00000008607	R3HDM1	100	89.701	ENSCANG00000034748	R3HDM1	100	87.863	Colobus_angolensis_palliatus
ENSODEG00000008607	R3HDM1	100	90.365	ENSCGRG00001012357	R3hdm1	97	89.585	Cricetulus_griseus_chok1gshd
ENSODEG00000008607	R3HDM1	100	94.774	ENSCGRG00000012080	R3hdm1	100	94.774	Cricetulus_griseus_crigri
ENSODEG00000008607	R3HDM1	100	58.305	ENSCSEG00000008944	r3hdm1	99	42.019	Cynoglossus_semilaevis
ENSODEG00000008607	R3HDM1	100	62.876	ENSCVAG00000007582	r3hdm1	99	46.927	Cyprinodon_variegatus
ENSODEG00000008607	R3HDM1	79	54.386	ENSDARG00000061081	arpp21	87	37.077	Danio_rerio
ENSODEG00000008607	R3HDM1	100	84.514	ENSDNOG00000000771	R3HDM1	100	84.777	Dasypus_novemcinctus
ENSODEG00000008607	R3HDM1	100	96.167	ENSDORG00000027689	-	100	96.167	Dipodomys_ordii
ENSODEG00000008607	R3HDM1	100	87.043	ENSETEG00000013606	R3HDM1	100	77.807	Echinops_telfairi
ENSODEG00000008607	R3HDM1	76	57.658	ENSEBUG00000014746	arpp21	97	42.319	Eptatretus_burgeri
ENSODEG00000008607	R3HDM1	100	91.461	ENSEASG00005007392	R3HDM1	100	96.059	Equus_asinus_asinus
ENSODEG00000008607	R3HDM1	100	95.819	ENSECAG00000019114	R3HDM1	100	91.725	Equus_caballus
ENSODEG00000008607	R3HDM1	100	79.402	ENSEEUG00000012589	R3HDM1	91	85.055	Erinaceus_europaeus
ENSODEG00000008607	R3HDM1	80	79.399	ENSELUG00000004909	R3HDM1	99	52.359	Esox_lucius
ENSODEG00000008607	R3HDM1	77	69.643	ENSELUG00000014413	r3hdm1	100	50.088	Esox_lucius
ENSODEG00000008607	R3HDM1	100	95.267	ENSFCAG00000027113	R3HDM1	100	92.084	Felis_catus
ENSODEG00000008607	R3HDM1	100	78.405	ENSFALG00000013731	R3HDM1	93	67.594	Ficedula_albicollis
ENSODEG00000008607	R3HDM1	100	96.864	ENSFDAG00000016478	R3HDM1	100	96.864	Fukomys_damarensis
ENSODEG00000008607	R3HDM1	100	64.505	ENSFHEG00000018713	r3hdm1	100	46.521	Fundulus_heteroclitus
ENSODEG00000008607	R3HDM1	76	73.025	ENSGMOG00000006042	-	74	68.615	Gadus_morhua
ENSODEG00000008607	R3HDM1	100	73.010	ENSGALG00000012246	R3HDM1	99	85.246	Gallus_gallus
ENSODEG00000008607	R3HDM1	100	58.305	ENSGAFG00000006203	r3hdm1	94	47.016	Gambusia_affinis
ENSODEG00000008607	R3HDM1	80	72.881	ENSGACG00000014925	r3hdm1	99	48.942	Gasterosteus_aculeatus
ENSODEG00000008607	R3HDM1	100	83.664	ENSGAGG00000007840	R3HDM1	96	82.707	Gopherus_agassizii
ENSODEG00000008607	R3HDM1	100	94.774	ENSGGOG00000008156	R3HDM1	100	88.380	Gorilla_gorilla
ENSODEG00000008607	R3HDM1	100	62.207	ENSHBUG00000015737	R3HDM1	91	56.742	Haplochromis_burtoni
ENSODEG00000008607	R3HDM1	100	97.213	ENSHGLG00000015718	R3HDM1	100	97.213	Heterocephalus_glaber_female
ENSODEG00000008607	R3HDM1	100	67.577	ENSHGLG00100015374	-	100	67.577	Heterocephalus_glaber_male
ENSODEG00000008607	R3HDM1	100	96.864	ENSHGLG00100003184	-	100	96.864	Heterocephalus_glaber_male
ENSODEG00000008607	R3HDM1	82	60.000	ENSHCOG00000013366	r3hdm1	88	60.000	Hippocampus_comes
ENSODEG00000008607	R3HDM1	57	66.667	ENSHCOG00000005036	-	56	76.190	Hippocampus_comes
ENSODEG00000008607	R3HDM1	91	62.306	ENSIPUG00000013629	r3hdm1	95	68.224	Ictalurus_punctatus
ENSODEG00000008607	R3HDM1	99	68.814	ENSIPUG00000001676	R3HDM1	99	65.000	Ictalurus_punctatus
ENSODEG00000008607	R3HDM1	100	95.473	ENSSTOG00000007572	R3HDM1	100	95.473	Ictidomys_tridecemlineatus
ENSODEG00000008607	R3HDM1	100	93.728	ENSJJAG00000018208	-	100	93.728	Jaculus_jaculus
ENSODEG00000008607	R3HDM1	59	76.316	ENSKMAG00000013373	-	89	76.316	Kryptolebias_marmoratus
ENSODEG00000008607	R3HDM1	100	57.679	ENSLBEG00000027981	-	87	63.184	Labrus_bergylta
ENSODEG00000008607	R3HDM1	100	74.026	ENSLACG00000005334	R3HDM1	100	71.416	Latimeria_chalumnae
ENSODEG00000008607	R3HDM1	99	71.711	ENSLOCG00000001641	r3hdm1	100	64.397	Lepisosteus_oculatus
ENSODEG00000008607	R3HDM1	100	90.845	ENSLAFG00000009065	R3HDM1	100	90.845	Loxodonta_africana
ENSODEG00000008607	R3HDM1	100	90.365	ENSMFAG00000030331	R3HDM1	100	96.059	Macaca_fascicularis
ENSODEG00000008607	R3HDM1	100	90.365	ENSMMUG00000009844	R3HDM1	100	88.292	Macaca_mulatta
ENSODEG00000008607	R3HDM1	100	90.365	ENSMNEG00000027793	R3HDM1	100	96.059	Macaca_nemestrina
ENSODEG00000008607	R3HDM1	100	90.365	ENSMLEG00000043189	R3HDM1	100	88.468	Mandrillus_leucophaeus
ENSODEG00000008607	R3HDM1	100	64.164	ENSMAMG00000004532	r3hdm1	99	47.393	Mastacembelus_armatus
ENSODEG00000008607	R3HDM1	100	62.207	ENSMZEG00005003157	r3hdm1	99	46.698	Maylandia_zebra
ENSODEG00000008607	R3HDM1	100	77.409	ENSMGAG00000012461	R3HDM1	100	74.123	Meleagris_gallopavo
ENSODEG00000008607	R3HDM1	100	95.122	ENSMAUG00000010315	R3hdm1	100	95.122	Mesocricetus_auratus
ENSODEG00000008607	R3HDM1	100	84.669	ENSMICG00000042655	-	100	85.714	Microcebus_murinus
ENSODEG00000008607	R3HDM1	100	95.473	ENSMICG00000005900	-	100	88.137	Microcebus_murinus
ENSODEG00000008607	R3HDM1	100	94.774	ENSMOCG00000019833	-	100	94.774	Microtus_ochrogaster
ENSODEG00000008607	R3HDM1	100	82.692	ENSMODG00000000923	R3HDM1	97	77.852	Monodelphis_domestica
ENSODEG00000008607	R3HDM1	100	64.626	ENSMALG00000009000	r3hdm1	99	44.613	Monopterus_albus
ENSODEG00000008607	R3HDM1	100	94.774	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.774	Mus_caroli
ENSODEG00000008607	R3HDM1	100	94.774	ENSMUSG00000056211	R3hdm1	100	94.774	Mus_musculus
ENSODEG00000008607	R3HDM1	100	94.425	MGP_PahariEiJ_G0027779	R3hdm1	100	94.425	Mus_pahari
ENSODEG00000008607	R3HDM1	100	94.774	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.774	Mus_spretus
ENSODEG00000008607	R3HDM1	100	91.362	ENSMPUG00000002412	R3HDM1	100	89.261	Mustela_putorius_furo
ENSODEG00000008607	R3HDM1	100	89.369	ENSMLUG00000013824	R3HDM1	100	87.357	Myotis_lucifugus
ENSODEG00000008607	R3HDM1	100	94.774	ENSNGAG00000001313	-	100	94.774	Nannospalax_galili
ENSODEG00000008607	R3HDM1	94	96.296	ENSNLEG00000008622	R3HDM1	100	88.292	Nomascus_leucogenys
ENSODEG00000008607	R3HDM1	91	74.376	ENSMEUG00000011784	R3HDM1	100	67.618	Notamacropus_eugenii
ENSODEG00000008607	R3HDM1	80	71.429	ENSONIG00000012017	r3hdm1	98	45.748	Oreochromis_niloticus
ENSODEG00000008607	R3HDM1	100	85.382	ENSOANG00000007987	R3HDM1	100	77.233	Ornithorhynchus_anatinus
ENSODEG00000008607	R3HDM1	100	91.694	ENSOCUG00000017366	R3HDM1	98	88.299	Oryctolagus_cuniculus
ENSODEG00000008607	R3HDM1	100	64.164	ENSORLG00000004297	r3hdm1	99	45.164	Oryzias_latipes
ENSODEG00000008607	R3HDM1	100	64.846	ENSORLG00020019252	-	93	60.526	Oryzias_latipes_hni
ENSODEG00000008607	R3HDM1	100	64.164	ENSORLG00015017355	r3hdm1	99	45.352	Oryzias_latipes_hsok
ENSODEG00000008607	R3HDM1	100	64.667	ENSOMEG00000003882	-	95	57.278	Oryzias_melastigma
ENSODEG00000008607	R3HDM1	100	90.365	ENSOGAG00000003136	R3HDM1	100	87.500	Otolemur_garnettii
ENSODEG00000008607	R3HDM1	100	90.698	ENSOARG00000010788	R3HDM1	100	88.292	Ovis_aries
ENSODEG00000008607	R3HDM1	95	96.320	ENSPPAG00000027858	R3HDM1	100	88.401	Pan_paniscus
ENSODEG00000008607	R3HDM1	100	95.267	ENSPPRG00000002626	R3HDM1	100	88.380	Panthera_pardus
ENSODEG00000008607	R3HDM1	100	95.473	ENSPTIG00000016581	R3HDM1	100	88.380	Panthera_tigris_altaica
ENSODEG00000008607	R3HDM1	95	96.320	ENSPTRG00000012494	R3HDM1	100	88.401	Pan_troglodytes
ENSODEG00000008607	R3HDM1	100	90.365	ENSPANG00000026448	R3HDM1	100	88.380	Papio_anubis
ENSODEG00000008607	R3HDM1	97	66.197	ENSPKIG00000004328	r3hdm1	91	75.873	Paramormyrops_kingsleyae
ENSODEG00000008607	R3HDM1	100	66.207	ENSPKIG00000011224	R3HDM1	90	63.017	Paramormyrops_kingsleyae
ENSODEG00000008607	R3HDM1	100	79.734	ENSPSIG00000012915	R3HDM1	100	73.573	Pelodiscus_sinensis
ENSODEG00000008607	R3HDM1	87	55.251	ENSPMGG00000011264	-	91	54.670	Periophthalmus_magnuspinnatus
ENSODEG00000008607	R3HDM1	100	94.774	ENSPEMG00000015187	R3hdm1	100	94.774	Peromyscus_maniculatus_bairdii
ENSODEG00000008607	R3HDM1	80	62.449	ENSPMAG00000003369	-	98	41.867	Petromyzon_marinus
ENSODEG00000008607	R3HDM1	100	90.311	ENSPCIG00000002491	R3HDM1	100	89.951	Phascolarctos_cinereus
ENSODEG00000008607	R3HDM1	100	61.873	ENSPFOG00000015036	r3hdm1	99	47.240	Poecilia_formosa
ENSODEG00000008607	R3HDM1	89	61.693	ENSPLAG00000018042	r3hdm1	94	47.269	Poecilia_latipinna
ENSODEG00000008607	R3HDM1	89	61.915	ENSPMEG00000023947	r3hdm1	94	47.213	Poecilia_mexicana
ENSODEG00000008607	R3HDM1	100	63.481	ENSPREG00000007902	r3hdm1	93	60.532	Poecilia_reticulata
ENSODEG00000008607	R3HDM1	100	87.071	ENSPPYG00000012815	R3HDM1	100	87.247	Pongo_abelii
ENSODEG00000008607	R3HDM1	100	86.711	ENSPCAG00000006208	R3HDM1	100	75.440	Procavia_capensis
ENSODEG00000008607	R3HDM1	100	89.712	ENSPCOG00000012698	R3HDM1	100	86.180	Propithecus_coquereli
ENSODEG00000008607	R3HDM1	100	81.395	ENSPVAG00000006098	R3HDM1	100	80.719	Pteropus_vampyrus
ENSODEG00000008607	R3HDM1	100	62.207	ENSPNYG00000008701	-	97	60.526	Pundamilia_nyererei
ENSODEG00000008607	R3HDM1	88	72.346	ENSPNAG00000013952	r3hdm1	93	72.269	Pygocentrus_nattereri
ENSODEG00000008607	R3HDM1	76	76.282	ENSPNAG00000005436	R3HDM1	99	76.206	Pygocentrus_nattereri
ENSODEG00000008607	R3HDM1	84	47.952	ENSPNAG00000004162	arpp21	64	42.610	Pygocentrus_nattereri
ENSODEG00000008607	R3HDM1	100	90.033	ENSRNOG00000004099	R3hdm1	100	88.644	Rattus_norvegicus
ENSODEG00000008607	R3HDM1	94	92.593	ENSRBIG00000033317	R3HDM1	100	98.893	Rhinopithecus_bieti
ENSODEG00000008607	R3HDM1	100	90.365	ENSRROG00000034534	R3HDM1	100	87.511	Rhinopithecus_roxellana
ENSODEG00000008607	R3HDM1	94	96.514	ENSSBOG00000020389	R3HDM1	100	88.028	Saimiri_boliviensis_boliviensis
ENSODEG00000008607	R3HDM1	100	87.086	ENSSHAG00000016999	R3HDM1	100	79.262	Sarcophilus_harrisii
ENSODEG00000008607	R3HDM1	100	70.890	ENSSFOG00015014134	r3hdm1	100	70.631	Scleropages_formosus
ENSODEG00000008607	R3HDM1	100	66.124	ENSSFOG00015019851	-	99	55.971	Scleropages_formosus
ENSODEG00000008607	R3HDM1	100	62.069	ENSSMAG00000001669	r3hdm1	99	42.092	Scophthalmus_maximus
ENSODEG00000008607	R3HDM1	100	64.626	ENSSDUG00000010749	r3hdm1	99	45.556	Seriola_dumerili
ENSODEG00000008607	R3HDM1	100	63.333	ENSSLDG00000004499	r3hdm1	99	45.232	Seriola_lalandi_dorsalis
ENSODEG00000008607	R3HDM1	100	77.076	ENSSARG00000000352	-	69	81.728	Sorex_araneus
ENSODEG00000008607	R3HDM1	100	78.808	ENSSPUG00000004167	R3HDM1	100	75.175	Sphenodon_punctatus
ENSODEG00000008607	R3HDM1	100	65.529	ENSSPAG00000004648	r3hdm1	99	47.182	Stegastes_partitus
ENSODEG00000008607	R3HDM1	100	95.267	ENSSSCG00000015692	R3HDM1	100	91.733	Sus_scrofa
ENSODEG00000008607	R3HDM1	100	77.741	ENSTGUG00000011750	R3HDM1	100	69.177	Taeniopygia_guttata
ENSODEG00000008607	R3HDM1	89	60.222	ENSTRUG00000011654	r3hdm1	93	46.336	Takifugu_rubripes
ENSODEG00000008607	R3HDM1	80	70.711	ENSTNIG00000010362	r3hdm1	95	45.171	Tetraodon_nigroviridis
ENSODEG00000008607	R3HDM1	100	82.306	ENSTTRG00000003935	R3HDM1	100	82.570	Tursiops_truncatus
ENSODEG00000008607	R3HDM1	100	91.362	ENSUAMG00000024806	R3HDM1	99	93.173	Ursus_americanus
ENSODEG00000008607	R3HDM1	91	97.059	ENSUMAG00000005552	R3HDM1	100	86.207	Ursus_maritimus
ENSODEG00000008607	R3HDM1	93	85.965	ENSVPAG00000007333	R3HDM1	93	85.965	Vicugna_pacos
ENSODEG00000008607	R3HDM1	100	95.470	ENSVVUG00000006457	R3HDM1	100	92.423	Vulpes_vulpes
ENSODEG00000008607	R3HDM1	86	81.948	ENSXETG00000019330	r3hdm1	100	63.071	Xenopus_tropicalis
ENSODEG00000008607	R3HDM1	82	63.070	ENSXCOG00000017448	r3hdm1	94	47.472	Xiphophorus_couchianus
ENSODEG00000008607	R3HDM1	100	62.207	ENSXMAG00000007885	r3hdm1	99	46.586	Xiphophorus_maculatus