EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000009176 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 5947 bases
Position: chrJH651554.1:78612-84558
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000012363	Smg4_UPF3	PF03467.15	3.2e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000012532	-	756	-	ENSODEP00000012363	251 (aa)	-	-

Gene Model

Click here to download ENSODEG00000009176's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000009176's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000009176	-	53	49.630	ENSODEG00000000596	-	68	48.889
ENSODEG00000009176	-	69	50.000	ENSODEG00000006064	-	86	50.000
ENSODEG00000009176	-	69	53.672	ENSODEG00000007164	-	76	53.672

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000009176	-	66	63.636	ENSG00000125351	UPF3B	75	64.815	Homo_sapiens
ENSODEG00000009176	-	86	74.771	ENSG00000169062	UPF3A	99	65.385	Homo_sapiens
ENSODEG00000009176	-	59	74.497	ENSACIG00000020468	upf3a	70	76.190	Amphilophus_citrinellus
ENSODEG00000009176	-	54	66.176	ENSANAG00000033169	-	54	65.441	Aotus_nancymaae
ENSODEG00000009176	-	66	63.636	ENSANAG00000021894	-	74	65.409	Aotus_nancymaae
ENSODEG00000009176	-	63	61.392	ENSAMXG00000000199	upf3b	53	61.392	Astyanax_mexicanus
ENSODEG00000009176	-	86	74.771	ENSBTAG00000047365	-	99	74.771	Bos_taurus
ENSODEG00000009176	-	63	65.823	ENSBTAG00000035615	UPF3B	55	62.722	Bos_taurus
ENSODEG00000009176	-	66	63.636	ENSCJAG00000004975	UPF3B	75	64.815	Callithrix_jacchus
ENSODEG00000009176	-	63	65.823	ENSCHIG00000018011	-	55	62.722	Capra_hircus
ENSODEG00000009176	-	63	65.823	ENSTSYG00000014690	UPF3B	76	59.172	Carlito_syrichta
ENSODEG00000009176	-	86	83.333	ENSCPOG00000006824	UPF3A	50	83.333	Cavia_porcellus
ENSODEG00000009176	-	60	56.291	ENSCCAG00000029813	-	52	54.430	Cebus_capucinus
ENSODEG00000009176	-	66	63.636	ENSCATG00000017506	UPF3B	75	64.815	Cercocebus_atys
ENSODEG00000009176	-	55	84.892	ENSCLAG00000000093	-	97	84.892	Chinchilla_lanigera
ENSODEG00000009176	-	61	54.248	ENSCING00000008396	-	96	54.248	Ciona_intestinalis
ENSODEG00000009176	-	63	65.823	ENSCANG00000029220	UPF3B	53	62.722	Colobus_angolensis_palliatus
ENSODEG00000009176	-	86	76.037	ENSCGRG00001017387	Upf3a	51	76.037	Cricetulus_griseus_chok1gshd
ENSODEG00000009176	-	86	75.115	ENSCGRG00000001468	Upf3a	51	75.115	Cricetulus_griseus_crigri
ENSODEG00000009176	-	77	71.569	ENSDNOG00000034391	UPF3A	51	69.507	Dasypus_novemcinctus
ENSODEG00000009176	-	72	72.973	ENSGALG00000016815	-	99	68.056	Gallus_gallus
ENSODEG00000009176	-	58	65.068	ENSGACG00000017435	upf3b	57	63.462	Gasterosteus_aculeatus
ENSODEG00000009176	-	57	81.944	ENSGAGG00000001952	UPF3A	82	81.944	Gopherus_agassizii
ENSODEG00000009176	-	66	63.636	ENSGGOG00000023995	UPF3B	64	66.400	Gorilla_gorilla
ENSODEG00000009176	-	86	81.567	ENSHGLG00000001544	UPF3A	52	81.567	Heterocephalus_glaber_female
ENSODEG00000009176	-	86	81.567	ENSHGLG00100013244	UPF3A	52	81.567	Heterocephalus_glaber_male
ENSODEG00000009176	-	60	72.000	ENSHCOG00000013985	upf3a	63	72.000	Hippocampus_comes
ENSODEG00000009176	-	92	78.205	ENSSTOG00000030282	-	97	78.632	Ictidomys_tridecemlineatus
ENSODEG00000009176	-	84	75.943	ENSJJAG00000018099	-	99	75.943	Jaculus_jaculus
ENSODEG00000009176	-	60	55.000	ENSMFAG00000045275	-	76	55.000	Macaca_fascicularis
ENSODEG00000009176	-	66	63.636	ENSMFAG00000045414	UPF3B	75	64.815	Macaca_fascicularis
ENSODEG00000009176	-	66	63.636	ENSMMUG00000020222	UPF3B	75	64.815	Macaca_mulatta
ENSODEG00000009176	-	58	54.839	ENSMMUG00000046682	-	76	54.839	Macaca_mulatta
ENSODEG00000009176	-	66	63.636	ENSMNEG00000039794	UPF3B	75	64.815	Macaca_nemestrina
ENSODEG00000009176	-	60	54.375	ENSMNEG00000040898	-	76	54.375	Macaca_nemestrina
ENSODEG00000009176	-	66	63.636	ENSMLEG00000010999	UPF3B	75	64.815	Mandrillus_leucophaeus
ENSODEG00000009176	-	55	68.571	ENSMICG00000042420	-	95	65.306	Microcebus_murinus
ENSODEG00000009176	-	63	65.823	ENSMICG00000001743	UPF3B	53	62.722	Microcebus_murinus
ENSODEG00000009176	-	83	80.569	ENSMOCG00000000550	Upf3a	61	78.440	Microtus_ochrogaster
ENSODEG00000009176	-	86	77.523	MGP_CAROLIEiJ_G0030848	Upf3a	53	77.523	Mus_caroli
ENSODEG00000009176	-	86	77.523	ENSMUSG00000038398	Upf3a	51	77.523	Mus_musculus
ENSODEG00000009176	-	86	77.064	MGP_PahariEiJ_G0021311	Upf3a	51	77.064	Mus_pahari
ENSODEG00000009176	-	86	77.523	MGP_SPRETEiJ_G0031958	Upf3a	51	77.523	Mus_spretus
ENSODEG00000009176	-	64	61.875	ENSNBRG00000011560	upf3b	79	64.655	Neolamprologus_brichardi
ENSODEG00000009176	-	69	50.289	ENSNLEG00000027516	-	83	50.289	Nomascus_leucogenys
ENSODEG00000009176	-	63	65.823	ENSNLEG00000014897	UPF3B	67	66.400	Nomascus_leucogenys
ENSODEG00000009176	-	69	54.598	ENSORLG00020003758	upf3b	65	52.062	Oryzias_latipes_hni
ENSODEG00000009176	-	83	76.667	ENSOGAG00000004788	UPF3A	53	74.654	Otolemur_garnettii
ENSODEG00000009176	-	66	63.636	ENSPPAG00000040390	UPF3B	64	66.400	Pan_paniscus
ENSODEG00000009176	-	66	63.253	ENSPTIG00000015264	UPF3B	53	62.722	Panthera_tigris_altaica
ENSODEG00000009176	-	66	63.636	ENSPTRG00000022228	UPF3B	64	66.400	Pan_troglodytes
ENSODEG00000009176	-	60	54.375	ENSPANG00000029350	-	77	54.375	Papio_anubis
ENSODEG00000009176	-	66	63.636	ENSPANG00000000900	UPF3B	75	64.815	Papio_anubis
ENSODEG00000009176	-	59	63.758	ENSPKIG00000019226	upf3b	74	65.789	Paramormyrops_kingsleyae
ENSODEG00000009176	-	59	61.074	ENSPMGG00000016067	upf3b	58	58.491	Periophthalmus_magnuspinnatus
ENSODEG00000009176	-	86	76.606	ENSPEMG00000019968	-	51	76.606	Peromyscus_maniculatus_bairdii
ENSODEG00000009176	-	77	74.359	ENSPCIG00000019590	-	96	68.889	Phascolarctos_cinereus
ENSODEG00000009176	-	65	68.862	ENSPLAG00000011960	upf3a	65	72.321	Poecilia_latipinna
ENSODEG00000009176	-	63	65.823	ENSPPYG00000020675	-	51	62.722	Pongo_abelii
ENSODEG00000009176	-	63	65.823	ENSPCOG00000021960	UPF3B	53	62.722	Propithecus_coquereli
ENSODEG00000009176	-	65	60.366	ENSPNAG00000021528	upf3b	52	61.935	Pygocentrus_nattereri
ENSODEG00000009176	-	83	80.000	ENSRNOG00000017397	Upf3a	53	77.523	Rattus_norvegicus
ENSODEG00000009176	-	66	63.636	ENSRROG00000041031	UPF3B	75	64.815	Rhinopithecus_roxellana
ENSODEG00000009176	-	66	64.242	ENSSBOG00000019740	UPF3B	76	66.038	Saimiri_boliviensis_boliviensis
ENSODEG00000009176	-	65	60.123	ENSSMAG00000012913	upf3b	53	60.123	Scophthalmus_maximus
ENSODEG00000009176	-	73	63.934	ENSSMAG00000003858	upf3a	79	70.940	Scophthalmus_maximus
ENSODEG00000009176	-	60	74.000	ENSSDUG00000009680	upf3a	85	61.486	Seriola_dumerili
ENSODEG00000009176	-	59	74.497	ENSSPAG00000007938	upf3a	69	72.667	Stegastes_partitus
ENSODEG00000009176	-	86	70.642	ENSSSCG00000024679	UPF3A	53	70.642	Sus_scrofa
ENSODEG00000009176	-	67	63.473	ENSVVUG00000011594	UPF3B	76	64.198	Vulpes_vulpes
ENSODEG00000009176	-	58	66.438	ENSXETG00000007440	upf3b	68	64.103	Xenopus_tropicalis
ENSODEG00000009176	-	57	60.417	ENSXCOG00000016586	upf3b	78	61.207	Xiphophorus_couchianus