EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000009997 (Gene tree)
Gene ID: 101562335
Gene Symbol: SBNO1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 81521 bases
Position: chrJH651591.1:5944111-6025631
Accession: 101562335
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000013531	ResIII	PF04851.15	5.8e-08	1	1
ENSODEP00000013530	ResIII	PF04851.15	9.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000013709	SBNO1-202	3810	-	ENSODEP00000013531	1269 (aa)	-	-
ENSODET00000013708	SBNO1-201	5360	XM_004635876	ENSODEP00000013530	1391 (aa)	XP_004635933	UPI000333E78B

Gene Model

Click here to download ENSODEG00000009997's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000009997's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000009997	SBNO1	83	57.331	ENSODEG00000011822	SBNO2	71	68.990

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000009997	SBNO1	99	99.277	ENSG00000139697	SBNO1	100	97.198	Homo_sapiens
ENSODEG00000009997	SBNO1	84	83.571	ENSAPOG00000003196	sbno1	98	81.513	Acanthochromis_polyacanthus
ENSODEG00000009997	SBNO1	99	99.277	ENSAMEG00000015151	SBNO1	100	97.350	Ailuropoda_melanoleuca
ENSODEG00000009997	SBNO1	99	82.281	ENSACIG00000008088	sbno1	95	82.281	Amphilophus_citrinellus
ENSODEG00000009997	SBNO1	99	82.857	ENSAOCG00000014859	sbno1	94	82.857	Amphiprion_ocellaris
ENSODEG00000009997	SBNO1	99	82.857	ENSAPEG00000006069	sbno1	94	82.857	Amphiprion_percula
ENSODEG00000009997	SBNO1	99	85.172	ENSATEG00000006667	sbno1	95	85.172	Anabas_testudineus
ENSODEG00000009997	SBNO1	99	94.756	ENSAPLG00000015674	SBNO1	100	91.960	Anas_platyrhynchos
ENSODEG00000009997	SBNO1	100	93.369	ENSACAG00000015441	SBNO1	84	93.705	Anolis_carolinensis
ENSODEG00000009997	SBNO1	100	97.865	ENSANAG00000029958	-	99	98.734	Aotus_nancymaae
ENSODEG00000009997	SBNO1	99	74.642	ENSACLG00000024913	sbno1	99	74.982	Astatotilapia_calliptera
ENSODEG00000009997	SBNO1	99	87.207	ENSAMXG00000019473	sbno1	95	87.207	Astyanax_mexicanus
ENSODEG00000009997	SBNO1	99	97.486	ENSBTAG00000020505	SBNO1	99	97.486	Bos_taurus
ENSODEG00000009997	SBNO1	99	99.096	ENSCJAG00000016599	SBNO1	100	97.128	Callithrix_jacchus
ENSODEG00000009997	SBNO1	99	98.919	ENSCAFG00000007503	SBNO1	100	97.133	Canis_familiaris
ENSODEG00000009997	SBNO1	100	97.402	ENSCAFG00020015363	SBNO1	100	97.402	Canis_lupus_dingo
ENSODEG00000009997	SBNO1	99	98.266	ENSCHIG00000008382	SBNO1	99	99.099	Capra_hircus
ENSODEG00000009997	SBNO1	99	99.458	ENSTSYG00000012749	SBNO1	100	97.416	Carlito_syrichta
ENSODEG00000009997	SBNO1	97	98.702	ENSCAPG00000000384	SBNO1	99	99.640	Cavia_aperea
ENSODEG00000009997	SBNO1	100	98.818	ENSCPOG00000008109	SBNO1	100	99.640	Cavia_porcellus
ENSODEG00000009997	SBNO1	100	92.998	ENSCCAG00000035316	SBNO1	100	92.998	Cebus_capucinus
ENSODEG00000009997	SBNO1	99	99.277	ENSCATG00000008239	SBNO1	98	99.101	Cercocebus_atys
ENSODEG00000009997	SBNO1	100	99.640	ENSCLAG00000008995	SBNO1	100	99.054	Chinchilla_lanigera
ENSODEG00000009997	SBNO1	83	98.273	ENSCSAG00000002064	SBNO1	100	98.273	Chlorocebus_sabaeus
ENSODEG00000009997	SBNO1	96	93.551	ENSCHOG00000008814	SBNO1	96	93.551	Choloepus_hoffmanni
ENSODEG00000009997	SBNO1	100	94.444	ENSCPBG00000025968	SBNO1	99	92.103	Chrysemys_picta_bellii
ENSODEG00000009997	SBNO1	100	91.966	ENSCANG00000042688	-	100	91.894	Colobus_angolensis_palliatus
ENSODEG00000009997	SBNO1	100	97.244	ENSCGRG00001017470	Sbno1	100	97.244	Cricetulus_griseus_chok1gshd
ENSODEG00000009997	SBNO1	100	97.244	ENSCGRG00000004756	Sbno1	100	97.244	Cricetulus_griseus_crigri
ENSODEG00000009997	SBNO1	99	83.544	ENSCSEG00000011919	sbno1	95	83.544	Cynoglossus_semilaevis
ENSODEG00000009997	SBNO1	99	83.483	ENSCVAG00000007038	sbno1	95	83.483	Cyprinodon_variegatus
ENSODEG00000009997	SBNO1	99	86.438	ENSDARG00000099080	sbno1	95	86.438	Danio_rerio
ENSODEG00000009997	SBNO1	100	95.398	ENSDNOG00000017147	SBNO1	98	96.509	Dasypus_novemcinctus
ENSODEG00000009997	SBNO1	95	96.577	ENSDORG00000015261	Sbno1	99	96.577	Dipodomys_ordii
ENSODEG00000009997	SBNO1	92	99.275	ENSETEG00000005620	SBNO1	88	98.582	Echinops_telfairi
ENSODEG00000009997	SBNO1	72	84.729	ENSEBUG00000013823	sbno1	85	84.729	Eptatretus_burgeri
ENSODEG00000009997	SBNO1	54	96.053	ENSEASG00005012595	-	91	97.754	Equus_asinus_asinus
ENSODEG00000009997	SBNO1	100	98.399	ENSECAG00000006127	SBNO1	100	97.775	Equus_caballus
ENSODEG00000009997	SBNO1	83	98.901	ENSEEUG00000003793	SBNO1	83	98.901	Erinaceus_europaeus
ENSODEG00000009997	SBNO1	99	86.667	ENSELUG00000002886	sbno1	95	86.667	Esox_lucius
ENSODEG00000009997	SBNO1	99	97.629	ENSFCAG00000015331	SBNO1	99	97.629	Felis_catus
ENSODEG00000009997	SBNO1	99	94.937	ENSFALG00000009273	SBNO1	100	92.247	Ficedula_albicollis
ENSODEG00000009997	SBNO1	99	96.619	ENSFDAG00000014232	SBNO1	99	96.619	Fukomys_damarensis
ENSODEG00000009997	SBNO1	99	83.662	ENSFHEG00000007360	sbno1	95	83.662	Fundulus_heteroclitus
ENSODEG00000009997	SBNO1	96	84.404	ENSGMOG00000018229	sbno1	94	84.404	Gadus_morhua
ENSODEG00000009997	SBNO1	87	96.701	ENSGALG00000003392	SBNO1	99	92.201	Gallus_gallus
ENSODEG00000009997	SBNO1	99	83.842	ENSGAFG00000003960	sbno1	95	83.842	Gambusia_affinis
ENSODEG00000009997	SBNO1	96	84.672	ENSGACG00000015633	sbno1	94	84.672	Gasterosteus_aculeatus
ENSODEG00000009997	SBNO1	100	94.624	ENSGAGG00000001065	SBNO1	100	94.937	Gopherus_agassizii
ENSODEG00000009997	SBNO1	100	98.399	ENSGGOG00000015000	SBNO1	99	99.277	Gorilla_gorilla
ENSODEG00000009997	SBNO1	99	68.973	ENSHBUG00000011910	sbno1	99	69.308	Haplochromis_burtoni
ENSODEG00000009997	SBNO1	100	99.640	ENSHGLG00000014165	-	99	99.638	Heterocephalus_glaber_female
ENSODEG00000009997	SBNO1	91	85.178	ENSHCOG00000003246	sbno1	95	85.178	Hippocampus_comes
ENSODEG00000009997	SBNO1	99	86.151	ENSIPUG00000015830	Sbno1	93	89.516	Ictalurus_punctatus
ENSODEG00000009997	SBNO1	100	98.346	ENSSTOG00000023221	SBNO1	100	99.640	Ictidomys_tridecemlineatus
ENSODEG00000009997	SBNO1	100	97.865	ENSJJAG00000001741	Sbno1	100	96.626	Jaculus_jaculus
ENSODEG00000009997	SBNO1	99	84.545	ENSKMAG00000009696	sbno1	95	84.545	Kryptolebias_marmoratus
ENSODEG00000009997	SBNO1	99	85.714	ENSLBEG00000007623	sbno1	95	85.714	Labrus_bergylta
ENSODEG00000009997	SBNO1	99	81.773	ENSLACG00000017227	SBNO1	93	91.146	Latimeria_chalumnae
ENSODEG00000009997	SBNO1	99	89.029	ENSLOCG00000005725	sbno1	95	89.029	Lepisosteus_oculatus
ENSODEG00000009997	SBNO1	99	98.373	ENSLAFG00000002135	SBNO1	100	96.267	Loxodonta_africana
ENSODEG00000009997	SBNO1	100	98.221	ENSMFAG00000031429	SBNO1	100	96.985	Macaca_fascicularis
ENSODEG00000009997	SBNO1	100	98.221	ENSMMUG00000011496	SBNO1	100	97.055	Macaca_mulatta
ENSODEG00000009997	SBNO1	99	99.277	ENSMLEG00000033260	SBNO1	99	99.277	Mandrillus_leucophaeus
ENSODEG00000009997	SBNO1	99	85.172	ENSMAMG00000005473	sbno1	95	85.172	Mastacembelus_armatus
ENSODEG00000009997	SBNO1	99	95.118	ENSMGAG00000003274	SBNO1	100	92.103	Meleagris_gallopavo
ENSODEG00000009997	SBNO1	52	97.424	ENSMAUG00000004834	-	99	97.424	Mesocricetus_auratus
ENSODEG00000009997	SBNO1	100	96.322	ENSMICG00000006573	-	100	96.322	Microcebus_murinus
ENSODEG00000009997	SBNO1	100	97.323	ENSMOCG00000009390	Sbno1	99	98.373	Microtus_ochrogaster
ENSODEG00000009997	SBNO1	99	84.286	ENSMMOG00000008691	sbno1	94	84.286	Mola_mola
ENSODEG00000009997	SBNO1	99	96.920	ENSMODG00000012470	SBNO1	98	94.325	Monodelphis_domestica
ENSODEG00000009997	SBNO1	99	83.666	ENSMALG00000001056	sbno1	95	83.666	Monopterus_albus
ENSODEG00000009997	SBNO1	99	99.094	MGP_CAROLIEiJ_G0027749	Sbno1	99	97.126	Mus_caroli
ENSODEG00000009997	SBNO1	99	99.094	ENSMUSG00000038095	Sbno1	99	97.428	Mus_musculus
ENSODEG00000009997	SBNO1	99	98.923	MGP_PahariEiJ_G0024329	Sbno1	99	97.126	Mus_pahari
ENSODEG00000009997	SBNO1	99	99.094	MGP_SPRETEiJ_G0028747	Sbno1	99	97.428	Mus_spretus
ENSODEG00000009997	SBNO1	100	97.487	ENSMPUG00000001658	SBNO1	100	97.487	Mustela_putorius_furo
ENSODEG00000009997	SBNO1	100	97.057	ENSMLUG00000017159	SBNO1	100	97.057	Myotis_lucifugus
ENSODEG00000009997	SBNO1	100	98.043	ENSNGAG00000012620	Sbno1	98	99.216	Nannospalax_galili
ENSODEG00000009997	SBNO1	99	74.517	ENSNBRG00000019189	sbno1	99	74.857	Neolamprologus_brichardi
ENSODEG00000009997	SBNO1	100	93.543	ENSNLEG00000001502	SBNO1	100	93.543	Nomascus_leucogenys
ENSODEG00000009997	SBNO1	60	95.699	ENSMEUG00000008768	-	93	88.608	Notamacropus_eugenii
ENSODEG00000009997	SBNO1	99	97.473	ENSOPRG00000011054	SBNO1	100	94.189	Ochotona_princeps
ENSODEG00000009997	SBNO1	99	83.755	ENSONIG00000015348	sbno1	99	75.775	Oreochromis_niloticus
ENSODEG00000009997	SBNO1	98	96.234	ENSOCUG00000002441	SBNO1	95	95.766	Oryctolagus_cuniculus
ENSODEG00000009997	SBNO1	99	83.183	ENSORLG00000001593	sbno1	95	83.183	Oryzias_latipes
ENSODEG00000009997	SBNO1	99	83.183	ENSORLG00020015216	sbno1	95	83.183	Oryzias_latipes_hni
ENSODEG00000009997	SBNO1	99	83.363	ENSORLG00015002726	sbno1	95	83.363	Oryzias_latipes_hsok
ENSODEG00000009997	SBNO1	99	83.485	ENSOMEG00000019313	sbno1	99	75.952	Oryzias_melastigma
ENSODEG00000009997	SBNO1	52	94.402	ENSOGAG00000010781	-	99	94.402	Otolemur_garnettii
ENSODEG00000009997	SBNO1	99	97.200	ENSOARG00000004404	SBNO1	99	97.200	Ovis_aries
ENSODEG00000009997	SBNO1	100	98.221	ENSPPAG00000024635	SBNO1	99	99.096	Pan_paniscus
ENSODEG00000009997	SBNO1	99	97.629	ENSPPRG00000022092	SBNO1	99	97.629	Panthera_pardus
ENSODEG00000009997	SBNO1	100	97.487	ENSPTIG00000017803	SBNO1	100	97.487	Panthera_tigris_altaica
ENSODEG00000009997	SBNO1	100	98.399	ENSPTRG00000005597	SBNO1	99	99.277	Pan_troglodytes
ENSODEG00000009997	SBNO1	99	99.277	ENSPANG00000011640	SBNO1	100	99.101	Papio_anubis
ENSODEG00000009997	SBNO1	99	86.486	ENSPKIG00000001441	sbno1	95	86.486	Paramormyrops_kingsleyae
ENSODEG00000009997	SBNO1	99	94.245	ENSPSIG00000009572	-	100	91.774	Pelodiscus_sinensis
ENSODEG00000009997	SBNO1	91	91.216	ENSPSIG00000009256	-	100	88.258	Pelodiscus_sinensis
ENSODEG00000009997	SBNO1	100	97.087	ENSPEMG00000016087	Sbno1	100	97.087	Peromyscus_maniculatus_bairdii
ENSODEG00000009997	SBNO1	99	96.558	ENSPCIG00000010985	SBNO1	99	93.826	Phascolarctos_cinereus
ENSODEG00000009997	SBNO1	99	83.842	ENSPFOG00000005069	sbno1	95	83.842	Poecilia_formosa
ENSODEG00000009997	SBNO1	99	83.842	ENSPLAG00000015015	sbno1	95	83.842	Poecilia_latipinna
ENSODEG00000009997	SBNO1	99	83.842	ENSPMEG00000021212	sbno1	95	83.842	Poecilia_mexicana
ENSODEG00000009997	SBNO1	99	83.483	ENSPREG00000017746	sbno1	95	83.483	Poecilia_reticulata
ENSODEG00000009997	SBNO1	99	99.277	ENSPPYG00000005084	SBNO1	100	96.839	Pongo_abelii
ENSODEG00000009997	SBNO1	89	91.358	ENSPCAG00000008634	SBNO1	88	91.436	Procavia_capensis
ENSODEG00000009997	SBNO1	100	97.642	ENSPCOG00000024277	SBNO1	99	98.909	Propithecus_coquereli
ENSODEG00000009997	SBNO1	92	99.206	ENSPVAG00000015304	SBNO1	87	99.206	Pteropus_vampyrus
ENSODEG00000009997	SBNO1	99	83.755	ENSPNYG00000004291	sbno1	95	83.755	Pundamilia_nyererei
ENSODEG00000009997	SBNO1	99	87.770	ENSPNAG00000015622	sbno1	95	87.770	Pygocentrus_nattereri
ENSODEG00000009997	SBNO1	99	99.094	ENSRNOG00000001064	Sbno1	99	99.094	Rattus_norvegicus
ENSODEG00000009997	SBNO1	99	99.277	ENSRROG00000034230	SBNO1	99	99.277	Rhinopithecus_roxellana
ENSODEG00000009997	SBNO1	97	92.262	ENSSBOG00000015422	SBNO1	100	92.262	Saimiri_boliviensis_boliviensis
ENSODEG00000009997	SBNO1	99	86.667	ENSSFOG00015019025	sbno1	95	86.667	Scleropages_formosus
ENSODEG00000009997	SBNO1	99	83.906	ENSSMAG00000013640	sbno1	95	83.906	Scophthalmus_maximus
ENSODEG00000009997	SBNO1	99	84.991	ENSSDUG00000023480	sbno1	95	84.991	Seriola_dumerili
ENSODEG00000009997	SBNO1	99	84.991	ENSSLDG00000007928	sbno1	95	84.991	Seriola_lalandi_dorsalis
ENSODEG00000009997	SBNO1	90	98.734	ENSSARG00000002594	SBNO1	89	98.058	Sorex_araneus
ENSODEG00000009997	SBNO1	99	93.502	ENSSPUG00000012640	SBNO1	100	89.447	Sphenodon_punctatus
ENSODEG00000009997	SBNO1	99	83.303	ENSSPAG00000016244	sbno1	95	83.303	Stegastes_partitus
ENSODEG00000009997	SBNO1	100	99.104	ENSSSCG00000009776	SBNO1	100	97.414	Sus_scrofa
ENSODEG00000009997	SBNO1	99	95.118	ENSTGUG00000005380	SBNO1	100	92.175	Taeniopygia_guttata
ENSODEG00000009997	SBNO1	99	84.810	ENSTRUG00000018490	sbno1	95	84.810	Takifugu_rubripes
ENSODEG00000009997	SBNO1	56	70.421	ENSTNIG00000013506	sbno1	99	71.163	Tetraodon_nigroviridis
ENSODEG00000009997	SBNO1	100	97.487	ENSUAMG00000019671	SBNO1	100	97.487	Ursus_americanus
ENSODEG00000009997	SBNO1	100	97.487	ENSUMAG00000004002	SBNO1	100	97.487	Ursus_maritimus
ENSODEG00000009997	SBNO1	95	97.826	ENSVPAG00000007024	SBNO1	95	97.826	Vicugna_pacos
ENSODEG00000009997	SBNO1	99	99.277	ENSVVUG00000027807	SBNO1	100	97.344	Vulpes_vulpes
ENSODEG00000009997	SBNO1	99	91.444	ENSXETG00000031930	SBNO1	95	91.444	Xenopus_tropicalis
ENSODEG00000009997	SBNO1	86	86.089	ENSXCOG00000011607	sbno1	90	85.864	Xiphophorus_couchianus
ENSODEG00000009997	SBNO1	99	83.483	ENSXMAG00000002140	sbno1	95	83.483	Xiphophorus_maculatus