EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000010854 (Gene tree)
Gene ID: 101567605
Gene Symbol: TRUB1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 37931 bases
Position: chrJH651557.1:15487718-15525648
Accession: 101567605
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000014685	TruB_N	PF01509.18	2.5e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000014876	TRUB1-201	1095	XM_004631559	ENSODEP00000014685	349 (aa)	XP_004631616	UPI000333CCB0

Gene Model

Click here to download ENSODEG00000010854's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000010854's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000010854	TRUB1	59	31.579	ENSODEG00000017292	TRUB2	64	31.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000010854	TRUB1	99	84.814	ENSG00000165832	TRUB1	99	84.814	Homo_sapiens
ENSODEG00000010854	TRUB1	70	66.531	ENSAPOG00000020565	trub1	89	66.260	Acanthochromis_polyacanthus
ENSODEG00000010854	TRUB1	96	85.799	ENSAMEG00000014931	TRUB1	99	84.900	Ailuropoda_melanoleuca
ENSODEG00000010854	TRUB1	70	60.976	ENSACIG00000003060	trub1	83	60.400	Amphilophus_citrinellus
ENSODEG00000010854	TRUB1	70	66.531	ENSAOCG00000017188	trub1	92	65.217	Amphiprion_ocellaris
ENSODEG00000010854	TRUB1	70	65.854	ENSAPEG00000015209	trub1	89	65.854	Amphiprion_percula
ENSODEG00000010854	TRUB1	76	63.910	ENSATEG00000023291	trub1	91	63.910	Anabas_testudineus
ENSODEG00000010854	TRUB1	78	71.324	ENSAPLG00000006808	TRUB1	97	71.324	Anas_platyrhynchos
ENSODEG00000010854	TRUB1	76	69.173	ENSACAG00000009282	TRUB1	96	69.173	Anolis_carolinensis
ENSODEG00000010854	TRUB1	96	86.228	ENSANAG00000022870	TRUB1	99	85.387	Aotus_nancymaae
ENSODEG00000010854	TRUB1	72	64.683	ENSACLG00000000823	trub1	91	64.683	Astatotilapia_calliptera
ENSODEG00000010854	TRUB1	76	62.782	ENSAMXG00000015845	trub1	89	62.782	Astyanax_mexicanus
ENSODEG00000010854	TRUB1	98	85.131	ENSBTAG00000012955	TRUB1	100	84.375	Bos_taurus
ENSODEG00000010854	TRUB1	99	84.571	ENSCJAG00000047815	TRUB1	99	84.571	Callithrix_jacchus
ENSODEG00000010854	TRUB1	99	84.814	ENSCAFG00000011688	TRUB1	99	84.814	Canis_familiaris
ENSODEG00000010854	TRUB1	99	84.814	ENSCAFG00020013237	TRUB1	99	84.814	Canis_lupus_dingo
ENSODEG00000010854	TRUB1	98	85.673	ENSCHIG00000020884	TRUB1	100	84.900	Capra_hircus
ENSODEG00000010854	TRUB1	99	82.286	ENSTSYG00000000446	TRUB1	99	83.714	Carlito_syrichta
ENSODEG00000010854	TRUB1	72	83.004	ENSCAPG00000017088	TRUB1	99	83.004	Cavia_aperea
ENSODEG00000010854	TRUB1	71	79.352	ENSCPOG00000030129	-	86	78.543	Cavia_porcellus
ENSODEG00000010854	TRUB1	70	86.475	ENSCPOG00000040236	-	100	86.475	Cavia_porcellus
ENSODEG00000010854	TRUB1	96	85.714	ENSCCAG00000028842	TRUB1	99	84.286	Cebus_capucinus
ENSODEG00000010854	TRUB1	99	85.387	ENSCATG00000033431	TRUB1	99	85.387	Cercocebus_atys
ENSODEG00000010854	TRUB1	70	88.934	ENSCLAG00000008664	TRUB1	100	88.934	Chinchilla_lanigera
ENSODEG00000010854	TRUB1	99	85.100	ENSCSAG00000004891	TRUB1	99	85.100	Chlorocebus_sabaeus
ENSODEG00000010854	TRUB1	98	72.464	ENSCHOG00000011931	TRUB1	99	72.464	Choloepus_hoffmanni
ENSODEG00000010854	TRUB1	78	74.265	ENSCPBG00000003051	TRUB1	94	74.265	Chrysemys_picta_bellii
ENSODEG00000010854	TRUB1	99	85.100	ENSCANG00000029445	TRUB1	99	85.100	Colobus_angolensis_palliatus
ENSODEG00000010854	TRUB1	81	75.089	ENSCGRG00001010322	-	80	74.915	Cricetulus_griseus_chok1gshd
ENSODEG00000010854	TRUB1	73	82.353	ENSCGRG00001016772	-	90	74.161	Cricetulus_griseus_chok1gshd
ENSODEG00000010854	TRUB1	81	83.630	ENSCGRG00000010806	Trub1	91	82.550	Cricetulus_griseus_crigri
ENSODEG00000010854	TRUB1	73	60.784	ENSCSEG00000011261	trub1	83	60.784	Cynoglossus_semilaevis
ENSODEG00000010854	TRUB1	72	66.000	ENSCVAG00000008791	trub1	76	66.000	Cyprinodon_variegatus
ENSODEG00000010854	TRUB1	78	63.971	ENSDARG00000053805	trub1	93	63.971	Danio_rerio
ENSODEG00000010854	TRUB1	96	80.597	ENSDNOG00000001069	TRUB1	99	79.714	Dasypus_novemcinctus
ENSODEG00000010854	TRUB1	98	83.673	ENSDORG00000010431	Trub1	98	83.673	Dipodomys_ordii
ENSODEG00000010854	TRUB1	64	85.211	ENSETEG00000009183	TRUB1	81	71.084	Echinops_telfairi
ENSODEG00000010854	TRUB1	96	86.012	ENSEASG00005014739	TRUB1	99	85.100	Equus_asinus_asinus
ENSODEG00000010854	TRUB1	96	86.012	ENSECAG00000007177	TRUB1	99	85.100	Equus_caballus
ENSODEG00000010854	TRUB1	100	73.259	ENSEEUG00000013993	TRUB1	100	74.095	Erinaceus_europaeus
ENSODEG00000010854	TRUB1	70	67.347	ENSELUG00000000502	trub1	86	67.347	Esox_lucius
ENSODEG00000010854	TRUB1	85	88.591	ENSFCAG00000031927	TRUB1	99	83.862	Felis_catus
ENSODEG00000010854	TRUB1	69	71.667	ENSFALG00000002232	TRUB1	92	71.667	Ficedula_albicollis
ENSODEG00000010854	TRUB1	70	84.016	ENSFDAG00000008140	TRUB1	100	84.016	Fukomys_damarensis
ENSODEG00000010854	TRUB1	72	64.800	ENSFHEG00000004016	trub1	86	64.800	Fundulus_heteroclitus
ENSODEG00000010854	TRUB1	78	70.588	ENSGALG00000009091	TRUB1	97	69.811	Gallus_gallus
ENSODEG00000010854	TRUB1	70	62.857	ENSGAFG00000009193	trub1	86	62.857	Gambusia_affinis
ENSODEG00000010854	TRUB1	56	65.641	ENSGACG00000015387	trub1	96	65.641	Gasterosteus_aculeatus
ENSODEG00000010854	TRUB1	90	69.649	ENSGAGG00000009758	TRUB1	81	73.852	Gopherus_agassizii
ENSODEG00000010854	TRUB1	99	84.814	ENSGGOG00000004583	TRUB1	99	84.814	Gorilla_gorilla
ENSODEG00000010854	TRUB1	77	62.172	ENSHBUG00000016787	trub1	96	62.030	Haplochromis_burtoni
ENSODEG00000010854	TRUB1	100	85.100	ENSHGLG00000015314	TRUB1	99	85.345	Heterocephalus_glaber_female
ENSODEG00000010854	TRUB1	70	83.607	ENSHGLG00100009183	TRUB1	100	81.148	Heterocephalus_glaber_male
ENSODEG00000010854	TRUB1	70	65.714	ENSHCOG00000017877	trub1	89	65.714	Hippocampus_comes
ENSODEG00000010854	TRUB1	76	64.286	ENSIPUG00000017559	trub1	94	64.286	Ictalurus_punctatus
ENSODEG00000010854	TRUB1	86	88.333	ENSSTOG00000003641	TRUB1	99	81.375	Ictidomys_tridecemlineatus
ENSODEG00000010854	TRUB1	86	85.333	ENSJJAG00000011800	Trub1	100	77.714	Jaculus_jaculus
ENSODEG00000010854	TRUB1	70	65.447	ENSKMAG00000006232	trub1	88	65.447	Kryptolebias_marmoratus
ENSODEG00000010854	TRUB1	76	62.030	ENSLBEG00000026722	trub1	92	62.030	Labrus_bergylta
ENSODEG00000010854	TRUB1	77	72.015	ENSLACG00000014885	TRUB1	89	72.015	Latimeria_chalumnae
ENSODEG00000010854	TRUB1	76	68.797	ENSLOCG00000012979	trub1	90	68.797	Lepisosteus_oculatus
ENSODEG00000010854	TRUB1	99	73.950	ENSLAFG00000015452	TRUB1	99	75.350	Loxodonta_africana
ENSODEG00000010854	TRUB1	99	84.814	ENSMFAG00000031767	TRUB1	99	84.814	Macaca_fascicularis
ENSODEG00000010854	TRUB1	99	85.100	ENSMMUG00000001902	TRUB1	99	85.100	Macaca_mulatta
ENSODEG00000010854	TRUB1	99	81.375	ENSMNEG00000044646	TRUB1	99	81.375	Macaca_nemestrina
ENSODEG00000010854	TRUB1	99	85.100	ENSMLEG00000042655	TRUB1	99	85.100	Mandrillus_leucophaeus
ENSODEG00000010854	TRUB1	72	64.683	ENSMZEG00005024095	trub1	91	64.683	Maylandia_zebra
ENSODEG00000010854	TRUB1	75	72.137	ENSMGAG00000011135	TRUB1	90	72.137	Meleagris_gallopavo
ENSODEG00000010854	TRUB1	81	81.139	ENSMAUG00000011101	Trub1	100	72.779	Mesocricetus_auratus
ENSODEG00000010854	TRUB1	99	85.057	ENSMICG00000016324	TRUB1	99	85.057	Microcebus_murinus
ENSODEG00000010854	TRUB1	81	82.206	ENSMOCG00000017759	Trub1	100	73.066	Microtus_ochrogaster
ENSODEG00000010854	TRUB1	82	78.322	ENSMODG00000009676	TRUB1	81	77.474	Monodelphis_domestica
ENSODEG00000010854	TRUB1	82	83.158	MGP_CAROLIEiJ_G0023100	Trub1	100	75.072	Mus_caroli
ENSODEG00000010854	TRUB1	82	82.105	ENSMUSG00000025086	Trub1	100	72.857	Mus_musculus
ENSODEG00000010854	TRUB1	85	82.215	MGP_PahariEiJ_G0014588	Trub1	88	82.215	Mus_pahari
ENSODEG00000010854	TRUB1	82	82.456	MGP_SPRETEiJ_G0024021	Trub1	100	73.143	Mus_spretus
ENSODEG00000010854	TRUB1	96	86.012	ENSMPUG00000003556	TRUB1	99	85.100	Mustela_putorius_furo
ENSODEG00000010854	TRUB1	86	87.708	ENSMLUG00000017686	TRUB1	99	81.143	Myotis_lucifugus
ENSODEG00000010854	TRUB1	100	79.083	ENSNGAG00000018682	Trub1	100	79.083	Nannospalax_galili
ENSODEG00000010854	TRUB1	73	65.098	ENSNBRG00000023393	trub1	91	65.098	Neolamprologus_brichardi
ENSODEG00000010854	TRUB1	96	85.119	ENSNLEG00000016345	TRUB1	99	84.241	Nomascus_leucogenys
ENSODEG00000010854	TRUB1	58	85.572	ENSMEUG00000006603	TRUB1	77	84.135	Notamacropus_eugenii
ENSODEG00000010854	TRUB1	86	80.268	ENSOPRG00000009371	TRUB1	99	74.425	Ochotona_princeps
ENSODEG00000010854	TRUB1	70	65.447	ENSONIG00000007249	trub1	89	65.447	Oreochromis_niloticus
ENSODEG00000010854	TRUB1	79	77.455	ENSOANG00000001556	TRUB1	91	77.455	Ornithorhynchus_anatinus
ENSODEG00000010854	TRUB1	86	82.943	ENSOCUG00000009456	TRUB1	96	79.758	Oryctolagus_cuniculus
ENSODEG00000010854	TRUB1	69	66.805	ENSORLG00000029719	trub1	89	65.737	Oryzias_latipes
ENSODEG00000010854	TRUB1	69	66.390	ENSORLG00020016767	trub1	88	65.339	Oryzias_latipes_hni
ENSODEG00000010854	TRUB1	69	66.390	ENSORLG00015014728	trub1	89	65.339	Oryzias_latipes_hsok
ENSODEG00000010854	TRUB1	76	63.333	ENSOMEG00000014556	trub1	92	63.333	Oryzias_melastigma
ENSODEG00000010854	TRUB1	99	85.591	ENSOGAG00000015895	TRUB1	99	85.591	Otolemur_garnettii
ENSODEG00000010854	TRUB1	85	88.779	ENSOARG00000015591	TRUB1	100	82.073	Ovis_aries
ENSODEG00000010854	TRUB1	99	85.100	ENSPPAG00000043645	TRUB1	99	85.100	Pan_paniscus
ENSODEG00000010854	TRUB1	96	84.478	ENSPPRG00000007096	TRUB1	99	83.862	Panthera_pardus
ENSODEG00000010854	TRUB1	96	84.776	ENSPTIG00000006378	TRUB1	99	84.150	Panthera_tigris_altaica
ENSODEG00000010854	TRUB1	99	85.100	ENSPTRG00000002964	TRUB1	99	85.100	Pan_troglodytes
ENSODEG00000010854	TRUB1	99	85.100	ENSPANG00000020712	TRUB1	99	85.100	Papio_anubis
ENSODEG00000010854	TRUB1	50	65.896	ENSPKIG00000003852	trub1	74	65.896	Paramormyrops_kingsleyae
ENSODEG00000010854	TRUB1	80	72.662	ENSPSIG00000012877	TRUB1	95	72.662	Pelodiscus_sinensis
ENSODEG00000010854	TRUB1	72	63.241	ENSPMGG00000000075	trub1	91	63.241	Periophthalmus_magnuspinnatus
ENSODEG00000010854	TRUB1	87	79.208	ENSPEMG00000011156	Trub1	100	73.352	Peromyscus_maniculatus_bairdii
ENSODEG00000010854	TRUB1	82	78.322	ENSPCIG00000009729	TRUB1	79	77.740	Phascolarctos_cinereus
ENSODEG00000010854	TRUB1	70	64.082	ENSPFOG00000009950	trub1	90	64.082	Poecilia_formosa
ENSODEG00000010854	TRUB1	70	64.082	ENSPLAG00000013855	trub1	86	64.082	Poecilia_latipinna
ENSODEG00000010854	TRUB1	70	64.082	ENSPMEG00000009064	trub1	88	64.082	Poecilia_mexicana
ENSODEG00000010854	TRUB1	70	64.898	ENSPREG00000003343	trub1	88	64.898	Poecilia_reticulata
ENSODEG00000010854	TRUB1	96	85.119	ENSPPYG00000002676	TRUB1	99	84.241	Pongo_abelii
ENSODEG00000010854	TRUB1	99	69.886	ENSPCAG00000008427	TRUB1	99	69.602	Procavia_capensis
ENSODEG00000010854	TRUB1	99	80.172	ENSPCOG00000024360	TRUB1	99	80.172	Propithecus_coquereli
ENSODEG00000010854	TRUB1	75	84.411	ENSPVAG00000007575	TRUB1	100	84.411	Pteropus_vampyrus
ENSODEG00000010854	TRUB1	77	62.222	ENSPNYG00000018614	trub1	91	64.683	Pundamilia_nyererei
ENSODEG00000010854	TRUB1	76	56.604	ENSPNAG00000006881	trub1	86	56.604	Pygocentrus_nattereri
ENSODEG00000010854	TRUB1	86	81.000	ENSRNOG00000017321	Trub1	100	75.358	Rattus_norvegicus
ENSODEG00000010854	TRUB1	99	76.218	ENSRBIG00000033423	TRUB1	99	76.218	Rhinopithecus_bieti
ENSODEG00000010854	TRUB1	99	85.100	ENSRROG00000033902	TRUB1	99	85.100	Rhinopithecus_roxellana
ENSODEG00000010854	TRUB1	96	86.310	ENSSBOG00000024237	TRUB1	99	84.857	Saimiri_boliviensis_boliviensis
ENSODEG00000010854	TRUB1	73	76.172	ENSSHAG00000009346	TRUB1	86	76.172	Sarcophilus_harrisii
ENSODEG00000010854	TRUB1	70	68.724	ENSSFOG00015022124	trub1	83	68.724	Scleropages_formosus
ENSODEG00000010854	TRUB1	70	66.260	ENSSMAG00000001020	trub1	88	66.260	Scophthalmus_maximus
ENSODEG00000010854	TRUB1	69	65.833	ENSSDUG00000016414	trub1	88	65.854	Seriola_dumerili
ENSODEG00000010854	TRUB1	69	66.250	ENSSLDG00000015486	trub1	90	65.600	Seriola_lalandi_dorsalis
ENSODEG00000010854	TRUB1	80	73.477	ENSSPUG00000001642	TRUB1	96	73.477	Sphenodon_punctatus
ENSODEG00000010854	TRUB1	75	64.639	ENSSPAG00000001217	trub1	94	64.639	Stegastes_partitus
ENSODEG00000010854	TRUB1	99	81.375	ENSSSCG00000010653	TRUB1	99	81.375	Sus_scrofa
ENSODEG00000010854	TRUB1	77	71.852	ENSTGUG00000010971	TRUB1	97	71.691	Taeniopygia_guttata
ENSODEG00000010854	TRUB1	72	73.123	ENSTBEG00000002880	TRUB1	99	73.123	Tupaia_belangeri
ENSODEG00000010854	TRUB1	61	91.121	ENSTTRG00000005767	TRUB1	100	82.955	Tursiops_truncatus
ENSODEG00000010854	TRUB1	97	86.053	ENSUAMG00000024876	TRUB1	99	85.387	Ursus_americanus
ENSODEG00000010854	TRUB1	85	91.186	ENSUMAG00000002411	TRUB1	99	83.954	Ursus_maritimus
ENSODEG00000010854	TRUB1	100	83.429	ENSVPAG00000005507	TRUB1	100	83.429	Vicugna_pacos
ENSODEG00000010854	TRUB1	99	83.954	ENSVVUG00000010085	TRUB1	83	84.241	Vulpes_vulpes
ENSODEG00000010854	TRUB1	76	66.038	ENSXETG00000023828	trub1	96	66.038	Xenopus_tropicalis
ENSODEG00000010854	TRUB1	76	60.755	ENSXCOG00000017847	trub1	86	63.115	Xiphophorus_couchianus
ENSODEG00000010854	TRUB1	70	63.265	ENSXMAG00000014701	trub1	88	63.265	Xiphophorus_maculatus