EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000011083 (Gene tree)
Gene ID: 101575769
Gene Symbol: GAR1
Alias: NOLA1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 6284 bases
Position: chrJH651531.1:20905795-20912078
Accession: 101575769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000015012	Gar1	PF04410.14	4.4e-39	1	1
ENSODEP00000015011	Gar1	PF04410.14	6.2e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000015208	GAR1-201	669	-	ENSODEP00000015011	222 (aa)	-	UPI000C9F685C
ENSODET00000015209	GAR1-202	684	XM_004626759	ENSODEP00000015012	194 (aa)	XP_004626816	-

Gene Model

Click here to download ENSODEG00000011083's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000011083's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000011083	GAR1	59	92.035	ENSAPOG00000019754	gar1	65	84.672	Acanthochromis_polyacanthus
ENSODEG00000011083	GAR1	63	96.748	ENSAMEG00000004605	GAR1	52	97.196	Ailuropoda_melanoleuca
ENSODEG00000011083	GAR1	68	81.679	ENSAOCG00000020947	gar1	50	93.458	Amphiprion_ocellaris
ENSODEG00000011083	GAR1	68	81.679	ENSAPEG00000001676	gar1	50	93.458	Amphiprion_percula
ENSODEG00000011083	GAR1	78	76.974	ENSATEG00000003733	gar1	50	93.458	Anabas_testudineus
ENSODEG00000011083	GAR1	55	88.679	ENSAPLG00000010926	GAR1	59	88.679	Anas_platyrhynchos
ENSODEG00000011083	GAR1	55	90.566	ENSACAG00000010031	GAR1	50	90.566	Anolis_carolinensis
ENSODEG00000011083	GAR1	56	98.165	ENSBTAG00000000748	GAR1	51	99.065	Bos_taurus
ENSODEG00000011083	GAR1	55	97.170	ENSCAFG00020015566	GAR1	56	98.131	Canis_lupus_dingo
ENSODEG00000011083	GAR1	57	98.182	ENSCHIG00000016026	-	51	99.065	Capra_hircus
ENSODEG00000011083	GAR1	51	91.837	ENSCHIG00000011049	-	54	85.981	Capra_hircus
ENSODEG00000011083	GAR1	56	88.991	ENSTSYG00000026632	-	55	89.720	Carlito_syrichta
ENSODEG00000011083	GAR1	56	97.248	ENSTSYG00000013668	-	50	98.131	Carlito_syrichta
ENSODEG00000011083	GAR1	57	97.273	ENSCATG00000021854	GAR1	54	98.131	Cercocebus_atys
ENSODEG00000011083	GAR1	57	96.364	ENSCLAG00000005335	GAR1	99	97.468	Chinchilla_lanigera
ENSODEG00000011083	GAR1	55	97.196	ENSCSAG00000003922	GAR1	54	98.131	Chlorocebus_sabaeus
ENSODEG00000011083	GAR1	58	96.429	ENSCHOG00000007484	-	51	95.000	Choloepus_hoffmanni
ENSODEG00000011083	GAR1	55	91.509	ENSCPBG00000004310	GAR1	69	77.372	Chrysemys_picta_bellii
ENSODEG00000011083	GAR1	51	67.347	ENSCING00000005744	-	74	62.931	Ciona_intestinalis
ENSODEG00000011083	GAR1	55	92.523	ENSCVAG00000002103	gar1	51	92.523	Cyprinodon_variegatus
ENSODEG00000011083	GAR1	56	96.330	ENSDNOG00000037632	GAR1	54	97.196	Dasypus_novemcinctus
ENSODEG00000011083	GAR1	50	81.443	ENSEBUG00000011178	gar1	66	59.589	Eptatretus_burgeri
ENSODEG00000011083	GAR1	57	96.364	ENSEASG00005004658	GAR1	50	97.196	Equus_asinus_asinus
ENSODEG00000011083	GAR1	57	97.273	ENSECAG00000013624	GAR1	54	98.131	Equus_caballus
ENSODEG00000011083	GAR1	67	58.462	ENSFCAG00000025841	-	57	62.185	Felis_catus
ENSODEG00000011083	GAR1	56	97.248	ENSFCAG00000040791	-	51	98.131	Felis_catus
ENSODEG00000011083	GAR1	57	90.991	ENSFHEG00000008068	gar1	50	91.589	Fundulus_heteroclitus
ENSODEG00000011083	GAR1	54	92.308	ENSGAGG00000004393	GAR1	54	91.429	Gopherus_agassizii
ENSODEG00000011083	GAR1	57	78.378	ENSGGOG00000036205	-	53	79.439	Gorilla_gorilla
ENSODEG00000011083	GAR1	99	92.188	ENSHGLG00000000493	GAR1	72	100.000	Heterocephalus_glaber_female
ENSODEG00000011083	GAR1	78	82.482	ENSIPUG00000003194	gar1	51	90.654	Ictalurus_punctatus
ENSODEG00000011083	GAR1	56	94.495	ENSSTOG00000005577	GAR1	99	94.805	Ictidomys_tridecemlineatus
ENSODEG00000011083	GAR1	57	89.189	ENSKMAG00000010402	gar1	51	90.654	Kryptolebias_marmoratus
ENSODEG00000011083	GAR1	80	84.127	ENSLACG00000003306	GAR1	89	84.127	Latimeria_chalumnae
ENSODEG00000011083	GAR1	56	82.407	ENSMFAG00000003572	-	52	82.243	Macaca_fascicularis
ENSODEG00000011083	GAR1	56	82.407	ENSMMUG00000038929	-	52	75.940	Macaca_mulatta
ENSODEG00000011083	GAR1	56	93.578	ENSMAUG00000016788	Gar1	99	94.937	Mesocricetus_auratus
ENSODEG00000011083	GAR1	56	95.413	ENSMOCG00000001340	Gar1	99	96.203	Microtus_ochrogaster
ENSODEG00000011083	GAR1	78	76.974	ENSMMOG00000004156	gar1	52	94.393	Mola_mola
ENSODEG00000011083	GAR1	55	91.589	ENSMALG00000009672	gar1	50	91.589	Monopterus_albus
ENSODEG00000011083	GAR1	56	93.578	MGP_CAROLIEiJ_G0025627	Gar1	99	96.203	Mus_caroli
ENSODEG00000011083	GAR1	57	93.636	ENSMUSG00000028010	Gar1	99	96.203	Mus_musculus
ENSODEG00000011083	GAR1	57	95.455	MGP_PahariEiJ_G0027076	Gar1	99	96.203	Mus_pahari
ENSODEG00000011083	GAR1	57	93.636	MGP_SPRETEiJ_G0026580	Gar1	99	96.203	Mus_spretus
ENSODEG00000011083	GAR1	56	97.248	ENSMPUG00000008615	GAR1	51	98.131	Mustela_putorius_furo
ENSODEG00000011083	GAR1	57	95.455	ENSNGAG00000008268	Gar1	99	96.104	Nannospalax_galili
ENSODEG00000011083	GAR1	71	73.723	ENSNLEG00000034282	-	54	81.308	Nomascus_leucogenys
ENSODEG00000011083	GAR1	57	97.273	ENSNLEG00000016578	GAR1	50	98.131	Nomascus_leucogenys
ENSODEG00000011083	GAR1	55	94.340	ENSOANG00000003665	GAR1	78	75.862	Ornithorhynchus_anatinus
ENSODEG00000011083	GAR1	56	96.330	ENSOCUG00000003901	GAR1	50	97.196	Oryctolagus_cuniculus
ENSODEG00000011083	GAR1	59	90.769	ENSORLG00000020583	gar1	69	86.093	Oryzias_latipes
ENSODEG00000011083	GAR1	59	90.769	ENSORLG00020008602	gar1	69	86.093	Oryzias_latipes_hni
ENSODEG00000011083	GAR1	59	90.769	ENSORLG00015017643	gar1	69	86.093	Oryzias_latipes_hsok
ENSODEG00000011083	GAR1	56	96.330	ENSOGAG00000004693	GAR1	50	97.196	Otolemur_garnettii
ENSODEG00000011083	GAR1	56	98.165	ENSOARG00000004910	GAR1	51	99.065	Ovis_aries
ENSODEG00000011083	GAR1	56	97.248	ENSPPAG00000014081	GAR1	54	98.131	Pan_paniscus
ENSODEG00000011083	GAR1	56	97.248	ENSPPRG00000023697	GAR1	51	98.131	Panthera_pardus
ENSODEG00000011083	GAR1	56	97.248	ENSPTIG00000021565	GAR1	51	98.131	Panthera_tigris_altaica
ENSODEG00000011083	GAR1	90	80.734	ENSPTRG00000049340	-	51	79.439	Pan_troglodytes
ENSODEG00000011083	GAR1	57	97.273	ENSPTRG00000016364	GAR1	54	98.131	Pan_troglodytes
ENSODEG00000011083	GAR1	56	84.259	ENSPANG00000033062	-	59	74.306	Papio_anubis
ENSODEG00000011083	GAR1	56	93.578	ENSPEMG00000015838	Gar1	99	94.937	Peromyscus_maniculatus_bairdii
ENSODEG00000011083	GAR1	78	80.132	ENSPFOG00000024155	gar1	51	91.589	Poecilia_formosa
ENSODEG00000011083	GAR1	78	80.132	ENSPLAG00000015056	gar1	51	91.589	Poecilia_latipinna
ENSODEG00000011083	GAR1	78	80.795	ENSPMEG00000009320	gar1	51	92.523	Poecilia_mexicana
ENSODEG00000011083	GAR1	64	91.200	ENSPCOG00000027049	GAR1	60	98.305	Propithecus_coquereli
ENSODEG00000011083	GAR1	57	94.545	ENSRNOG00000061146	Gar1	63	96.262	Rattus_norvegicus
ENSODEG00000011083	GAR1	55	98.131	ENSRBIG00000019547	GAR1	54	98.131	Rhinopithecus_bieti
ENSODEG00000011083	GAR1	58	80.357	ENSRBIG00000042411	-	52	80.374	Rhinopithecus_bieti
ENSODEG00000011083	GAR1	57	97.273	ENSRROG00000028454	GAR1	54	98.131	Rhinopithecus_roxellana
ENSODEG00000011083	GAR1	58	80.357	ENSRROG00000044348	-	51	80.374	Rhinopithecus_roxellana
ENSODEG00000011083	GAR1	64	51.587	YHR089C	-	95	48.503	Saccharomyces_cerevisiae
ENSODEG00000011083	GAR1	56	97.248	ENSSBOG00000024785	GAR1	50	98.131	Saimiri_boliviensis_boliviensis
ENSODEG00000011083	GAR1	65	82.677	ENSSMAG00000009976	gar1	65	84.507	Scophthalmus_maximus
ENSODEG00000011083	GAR1	55	92.523	ENSSLDG00000023264	gar1	50	92.523	Seriola_lalandi_dorsalis
ENSODEG00000011083	GAR1	62	84.298	ENSSPUG00000008707	GAR1	59	92.453	Sphenodon_punctatus
ENSODEG00000011083	GAR1	57	98.182	ENSSSCG00000009137	GAR1	53	99.065	Sus_scrofa
ENSODEG00000011083	GAR1	51	88.889	ENSTGUG00000004185	GAR1	67	88.889	Taeniopygia_guttata
ENSODEG00000011083	GAR1	55	89.720	ENSTRUG00000020580	gar1	51	89.720	Takifugu_rubripes
ENSODEG00000011083	GAR1	60	88.034	ENSTNIG00000013023	gar1	64	91.150	Tetraodon_nigroviridis
ENSODEG00000011083	GAR1	55	97.170	ENSUAMG00000005652	GAR1	56	98.131	Ursus_americanus
ENSODEG00000011083	GAR1	56	97.248	ENSUMAG00000000776	GAR1	52	98.131	Ursus_maritimus
ENSODEG00000011083	GAR1	63	97.561	ENSVVUG00000017612	GAR1	55	98.131	Vulpes_vulpes