EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000011181 (Gene tree)
Gene ID: 101565992
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 17752 bases
Position: chrJH651546.1:18351140-18368891
Accession: 101565992
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000015143	zf-CCCH	PF00642.24	3.1e-20	1	2
ENSODEP00000015143	zf-CCCH	PF00642.24	3.1e-20	2	2
ENSODEP00000015144	zf-CCCH	PF00642.24	1.2e-15	1	2
ENSODEP00000015144	zf-CCCH	PF00642.24	1.2e-15	2	2
ENSODEP00000015144	zf-CCHC	PF00098.23	2.9e-06	1	1
ENSODEP00000015143	zf-CCHC	PF00098.23	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000015343	-	636	XM_012514401	ENSODEP00000015144	211 (aa)	XP_012369855	UPI00000EAEAB
ENSODET00000015342	-	810	XM_004629642	ENSODEP00000015143	269 (aa)	XP_004629699	UPI00001F345B

Gene Model

Click here to download ENSODEG00000011181's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000011181's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000011181	-	98	78.774	ENSODEG00000018283	-	89	78.774
ENSODEG00000011181	-	100	75.092	ENSODEG00000009779	-	100	75.092

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000011181	-	100	99.257	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSODEG00000011181	-	67	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSODEG00000011181	-	100	100.000	ENSAMEG00000006252	CPSF4	100	100.000	Ailuropoda_melanoleuca
ENSODEG00000011181	-	100	79.554	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSODEG00000011181	-	100	85.185	ENSAOCG00000019616	cpsf4	100	85.185	Amphiprion_ocellaris
ENSODEG00000011181	-	100	85.185	ENSAPEG00000011679	cpsf4	100	85.185	Amphiprion_percula
ENSODEG00000011181	-	100	84.559	ENSATEG00000007010	cpsf4	100	84.559	Anabas_testudineus
ENSODEG00000011181	-	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSODEG00000011181	-	100	99.257	ENSANAG00000021360	CPSF4	100	99.257	Aotus_nancymaae
ENSODEG00000011181	-	100	83.704	ENSACLG00000010374	cpsf4	100	83.704	Astatotilapia_calliptera
ENSODEG00000011181	-	100	85.782	ENSAMXG00000031647	cpsf4	100	86.256	Astyanax_mexicanus
ENSODEG00000011181	-	100	89.591	ENSBTAG00000002090	CPSF4	100	89.591	Bos_taurus
ENSODEG00000011181	-	100	99.257	ENSCJAG00000015826	CPSF4	100	99.257	Callithrix_jacchus
ENSODEG00000011181	-	100	99.628	ENSCAFG00000015036	CPSF4	100	99.628	Canis_familiaris
ENSODEG00000011181	-	100	93.309	ENSCAFG00020014462	CPSF4	100	93.309	Canis_lupus_dingo
ENSODEG00000011181	-	100	99.257	ENSCHIG00000014313	CPSF4	100	99.257	Capra_hircus
ENSODEG00000011181	-	100	88.732	ENSTSYG00000014604	-	100	88.732	Carlito_syrichta
ENSODEG00000011181	-	85	90.055	ENSTSYG00000008195	-	100	90.055	Carlito_syrichta
ENSODEG00000011181	-	100	99.052	ENSTSYG00000005712	-	100	99.052	Carlito_syrichta
ENSODEG00000011181	-	81	100.000	ENSCAPG00000013881	CPSF4	87	100.000	Cavia_aperea
ENSODEG00000011181	-	100	100.000	ENSCPOG00000001783	CPSF4	100	100.000	Cavia_porcellus
ENSODEG00000011181	-	100	99.257	ENSCCAG00000028291	CPSF4	100	99.257	Cebus_capucinus
ENSODEG00000011181	-	100	99.257	ENSCATG00000038440	CPSF4	100	99.257	Cercocebus_atys
ENSODEG00000011181	-	100	99.628	ENSCLAG00000007050	CPSF4	100	99.628	Chinchilla_lanigera
ENSODEG00000011181	-	100	99.257	ENSCSAG00000017795	CPSF4	100	99.257	Chlorocebus_sabaeus
ENSODEG00000011181	-	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSODEG00000011181	-	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSODEG00000011181	-	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSODEG00000011181	-	96	53.357	ENSCSAVG00000011469	-	97	53.025	Ciona_savignyi
ENSODEG00000011181	-	100	99.257	ENSCANG00000019384	CPSF4	100	99.257	Colobus_angolensis_palliatus
ENSODEG00000011181	-	100	100.000	ENSCGRG00001024184	Cpsf4	100	100.000	Cricetulus_griseus_chok1gshd
ENSODEG00000011181	-	100	100.000	ENSCGRG00000013892	Cpsf4	100	100.000	Cricetulus_griseus_crigri
ENSODEG00000011181	-	100	84.834	ENSCSEG00000019055	cpsf4	100	84.834	Cynoglossus_semilaevis
ENSODEG00000011181	-	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSODEG00000011181	-	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSODEG00000011181	-	100	99.628	ENSDNOG00000006344	CPSF4	100	99.628	Dasypus_novemcinctus
ENSODEG00000011181	-	81	99.539	ENSDORG00000000742	Cpsf4	100	99.539	Dipodomys_ordii
ENSODEG00000011181	-	100	54.795	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSODEG00000011181	-	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSODEG00000011181	-	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSODEG00000011181	-	100	90.706	ENSEASG00005002487	CPSF4	100	90.706	Equus_asinus_asinus
ENSODEG00000011181	-	100	100.000	ENSECAG00000007525	CPSF4	100	100.000	Equus_caballus
ENSODEG00000011181	-	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSODEG00000011181	-	100	82.847	ENSELUG00000011481	cpsf4	100	80.657	Esox_lucius
ENSODEG00000011181	-	100	100.000	ENSFCAG00000015070	CPSF4	100	100.000	Felis_catus
ENSODEG00000011181	-	100	85.874	ENSFALG00000013799	CPSF4	100	84.387	Ficedula_albicollis
ENSODEG00000011181	-	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSODEG00000011181	-	90	99.177	ENSFDAG00000014092	CPSF4	100	99.177	Fukomys_damarensis
ENSODEG00000011181	-	100	83.333	ENSFHEG00000010880	cpsf4	100	83.333	Fundulus_heteroclitus
ENSODEG00000011181	-	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSODEG00000011181	-	99	38.421	ENSGALG00000004441	-	98	32.609	Gallus_gallus
ENSODEG00000011181	-	100	85.874	ENSGALG00000004714	CPSF4	100	84.758	Gallus_gallus
ENSODEG00000011181	-	100	82.963	ENSGAFG00000010580	cpsf4	100	82.963	Gambusia_affinis
ENSODEG00000011181	-	100	77.491	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSODEG00000011181	-	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSODEG00000011181	-	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSODEG00000011181	-	100	99.257	ENSGGOG00000015131	CPSF4	100	99.257	Gorilla_gorilla
ENSODEG00000011181	-	100	83.704	ENSHBUG00000013699	cpsf4	100	83.704	Haplochromis_burtoni
ENSODEG00000011181	-	100	99.526	ENSHGLG00000017150	CPSF4	100	99.526	Heterocephalus_glaber_female
ENSODEG00000011181	-	87	96.186	ENSHGLG00100009215	-	100	97.159	Heterocephalus_glaber_male
ENSODEG00000011181	-	100	71.090	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSODEG00000011181	-	100	81.111	ENSHCOG00000004397	cpsf4	100	78.519	Hippocampus_comes
ENSODEG00000011181	-	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSODEG00000011181	-	100	100.000	ENSSTOG00000001688	CPSF4	100	100.000	Ictidomys_tridecemlineatus
ENSODEG00000011181	-	100	99.628	ENSJJAG00000019426	Cpsf4	100	99.628	Jaculus_jaculus
ENSODEG00000011181	-	100	82.222	ENSKMAG00000015642	cpsf4	100	82.222	Kryptolebias_marmoratus
ENSODEG00000011181	-	100	88.889	ENSLACG00000010938	CPSF4	100	88.889	Latimeria_chalumnae
ENSODEG00000011181	-	100	60.741	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSODEG00000011181	-	100	89.591	ENSLOCG00000004814	cpsf4	100	89.591	Lepisosteus_oculatus
ENSODEG00000011181	-	100	99.628	ENSLAFG00000000159	CPSF4	100	99.628	Loxodonta_africana
ENSODEG00000011181	-	100	99.257	ENSMFAG00000001462	CPSF4	100	99.257	Macaca_fascicularis
ENSODEG00000011181	-	100	99.257	ENSMMUG00000019191	CPSF4	100	99.257	Macaca_mulatta
ENSODEG00000011181	-	100	99.257	ENSMNEG00000032306	CPSF4	100	99.257	Macaca_nemestrina
ENSODEG00000011181	-	100	99.257	ENSMLEG00000034721	CPSF4	100	99.257	Mandrillus_leucophaeus
ENSODEG00000011181	-	100	84.074	ENSMAMG00000006244	cpsf4	100	83.516	Mastacembelus_armatus
ENSODEG00000011181	-	100	83.704	ENSMZEG00005007515	cpsf4	100	83.704	Maylandia_zebra
ENSODEG00000011181	-	87	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSODEG00000011181	-	100	100.000	ENSMAUG00000021253	Cpsf4	100	100.000	Mesocricetus_auratus
ENSODEG00000011181	-	100	99.257	ENSMICG00000017429	CPSF4	100	99.257	Microcebus_murinus
ENSODEG00000011181	-	100	100.000	ENSMOCG00000014901	Cpsf4	100	100.000	Microtus_ochrogaster
ENSODEG00000011181	-	100	84.834	ENSMMOG00000001813	cpsf4	100	84.834	Mola_mola
ENSODEG00000011181	-	100	97.026	ENSMODG00000001367	CPSF4	100	97.026	Monodelphis_domestica
ENSODEG00000011181	-	100	82.963	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSODEG00000011181	-	100	100.000	MGP_CAROLIEiJ_G0028012	Cpsf4	100	100.000	Mus_caroli
ENSODEG00000011181	-	100	100.000	ENSMUSG00000029625	Cpsf4	100	100.000	Mus_musculus
ENSODEG00000011181	-	100	100.000	MGP_PahariEiJ_G0024581	Cpsf4	100	100.000	Mus_pahari
ENSODEG00000011181	-	100	99.628	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.628	Mus_spretus
ENSODEG00000011181	-	100	100.000	ENSMPUG00000016508	CPSF4	100	100.000	Mustela_putorius_furo
ENSODEG00000011181	-	87	88.085	ENSMLUG00000010980	CPSF4	100	88.085	Myotis_lucifugus
ENSODEG00000011181	-	100	99.628	ENSNGAG00000001567	Cpsf4	100	99.628	Nannospalax_galili
ENSODEG00000011181	-	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSODEG00000011181	-	100	99.052	ENSNLEG00000011074	CPSF4	100	99.052	Nomascus_leucogenys
ENSODEG00000011181	-	100	97.026	ENSMEUG00000006955	CPSF4	100	97.026	Notamacropus_eugenii
ENSODEG00000011181	-	100	99.257	ENSOPRG00000013663	CPSF4	100	99.257	Ochotona_princeps
ENSODEG00000011181	-	100	83.704	ENSONIG00000008495	cpsf4	100	83.704	Oreochromis_niloticus
ENSODEG00000011181	-	100	55.036	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSODEG00000011181	-	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSODEG00000011181	-	100	99.257	ENSOCUG00000002437	CPSF4	70	99.257	Oryctolagus_cuniculus
ENSODEG00000011181	-	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSODEG00000011181	-	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSODEG00000011181	-	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSODEG00000011181	-	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSODEG00000011181	-	100	99.628	ENSOGAG00000010884	CPSF4	100	99.628	Otolemur_garnettii
ENSODEG00000011181	-	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSODEG00000011181	-	100	98.885	ENSPPAG00000043355	CPSF4	100	98.885	Pan_paniscus
ENSODEG00000011181	-	100	100.000	ENSPPRG00000003134	CPSF4	100	100.000	Panthera_pardus
ENSODEG00000011181	-	90	99.587	ENSPTIG00000005604	CPSF4	90	99.587	Panthera_tigris_altaica
ENSODEG00000011181	-	100	98.885	ENSPTRG00000019453	CPSF4	100	98.885	Pan_troglodytes
ENSODEG00000011181	-	100	99.257	ENSPANG00000023123	CPSF4	100	99.257	Papio_anubis
ENSODEG00000011181	-	100	83.942	ENSPKIG00000014278	cpsf4	100	83.942	Paramormyrops_kingsleyae
ENSODEG00000011181	-	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSODEG00000011181	-	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSODEG00000011181	-	100	72.862	ENSPMGG00000017735	cpsf4	100	71.587	Periophthalmus_magnuspinnatus
ENSODEG00000011181	-	100	100.000	ENSPEMG00000004508	Cpsf4	100	100.000	Peromyscus_maniculatus_bairdii
ENSODEG00000011181	-	100	97.026	ENSPCIG00000024776	CPSF4	100	97.026	Phascolarctos_cinereus
ENSODEG00000011181	-	100	82.963	ENSPFOG00000014912	cpsf4	100	82.963	Poecilia_formosa
ENSODEG00000011181	-	100	75.465	ENSPLAG00000009599	cpsf4	100	75.465	Poecilia_latipinna
ENSODEG00000011181	-	100	82.963	ENSPMEG00000009790	cpsf4	100	82.963	Poecilia_mexicana
ENSODEG00000011181	-	100	82.222	ENSPREG00000018166	cpsf4	100	78.889	Poecilia_reticulata
ENSODEG00000011181	-	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSODEG00000011181	-	100	98.885	ENSPCAG00000001892	CPSF4	100	98.885	Procavia_capensis
ENSODEG00000011181	-	100	99.628	ENSPCOG00000012771	CPSF4	100	99.628	Propithecus_coquereli
ENSODEG00000011181	-	100	93.309	ENSPVAG00000007531	CPSF4	100	93.309	Pteropus_vampyrus
ENSODEG00000011181	-	100	83.704	ENSPNYG00000018559	cpsf4	100	83.704	Pundamilia_nyererei
ENSODEG00000011181	-	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSODEG00000011181	-	100	100.000	ENSRNOG00000000985	Cpsf4	100	100.000	Rattus_norvegicus
ENSODEG00000011181	-	87	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSODEG00000011181	-	100	99.052	ENSRROG00000040431	CPSF4	100	99.052	Rhinopithecus_roxellana
ENSODEG00000011181	-	100	99.257	ENSSBOG00000020493	CPSF4	100	99.257	Saimiri_boliviensis_boliviensis
ENSODEG00000011181	-	100	97.026	ENSSHAG00000011533	CPSF4	100	97.026	Sarcophilus_harrisii
ENSODEG00000011181	-	100	85.145	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSODEG00000011181	-	100	79.182	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSODEG00000011181	-	100	83.704	ENSSDUG00000018887	cpsf4	100	83.704	Seriola_dumerili
ENSODEG00000011181	-	100	83.704	ENSSLDG00000019078	cpsf4	100	83.704	Seriola_lalandi_dorsalis
ENSODEG00000011181	-	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSODEG00000011181	-	96	58.915	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSODEG00000011181	-	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSODEG00000011181	-	100	79.926	ENSSPAG00000006174	cpsf4	100	76.952	Stegastes_partitus
ENSODEG00000011181	-	100	90.335	ENSSSCG00000026896	CPSF4	100	90.335	Sus_scrofa
ENSODEG00000011181	-	100	84.871	ENSTGUG00000007552	CPSF4	100	83.395	Taeniopygia_guttata
ENSODEG00000011181	-	100	80.952	ENSTRUG00000024220	cpsf4	100	80.952	Takifugu_rubripes
ENSODEG00000011181	-	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSODEG00000011181	-	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSODEG00000011181	-	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSODEG00000011181	-	92	89.474	ENSUAMG00000008051	CPSF4	85	89.474	Ursus_americanus
ENSODEG00000011181	-	100	90.335	ENSUMAG00000009474	CPSF4	100	90.335	Ursus_maritimus
ENSODEG00000011181	-	100	90.335	ENSVVUG00000008824	CPSF4	100	90.335	Vulpes_vulpes
ENSODEG00000011181	-	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSODEG00000011181	-	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSODEG00000011181	-	100	84.360	ENSXCOG00000016040	cpsf4	100	84.360	Xiphophorus_couchianus
ENSODEG00000011181	-	100	82.963	ENSXMAG00000024670	cpsf4	100	82.963	Xiphophorus_maculatus