EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000011481 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 16735 bases
Position: chrJH651737.1:638904-655638
Accession: 101578623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000015550	RRM_1	PF00076.22	1.3e-33	1	2
ENSODEP00000015550	RRM_1	PF00076.22	1.3e-33	2	2
ENSODEP00000015551	RRM_1	PF00076.22	1.4e-33	1	2
ENSODEP00000015551	RRM_1	PF00076.22	1.4e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000015752	-	762	-	ENSODEP00000015551	253 (aa)	-	-
ENSODET00000015751	-	975	XM_012517853	ENSODEP00000015550	248 (aa)	XP_012373307	-

Gene Model

Click here to download ENSODEG00000011481's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000011481's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000011481	-	65	46.988	ENSODEG00000013469	-	60	45.509
ENSODEG00000011481	-	65	46.386	ENSODEG00000000700	-	61	44.910

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000011481	-	100	99.597	ENSG00000136450	SRSF1	100	99.597	Homo_sapiens
ENSODEG00000011481	-	78	91.710	ENSAPOG00000002748	-	98	84.362	Acanthochromis_polyacanthus
ENSODEG00000011481	-	79	90.640	ENSAPOG00000008542	-	99	86.166	Acanthochromis_polyacanthus
ENSODEG00000011481	-	100	96.774	ENSAMEG00000002635	SRSF1	100	96.774	Ailuropoda_melanoleuca
ENSODEG00000011481	-	88	86.099	ENSACIG00000008091	srsf1a	98	78.926	Amphilophus_citrinellus
ENSODEG00000011481	-	88	86.547	ENSAOCG00000010671	-	98	85.185	Amphiprion_ocellaris
ENSODEG00000011481	-	79	90.640	ENSAOCG00000000337	-	99	86.454	Amphiprion_ocellaris
ENSODEG00000011481	-	79	90.640	ENSAPEG00000023352	-	98	86.508	Amphiprion_percula
ENSODEG00000011481	-	88	86.547	ENSAPEG00000009915	-	98	85.185	Amphiprion_percula
ENSODEG00000011481	-	82	86.700	ENSATEG00000021567	-	99	84.898	Anabas_testudineus
ENSODEG00000011481	-	78	92.228	ENSATEG00000022403	-	98	84.898	Anabas_testudineus
ENSODEG00000011481	-	100	97.984	ENSACAG00000005542	-	100	97.984	Anolis_carolinensis
ENSODEG00000011481	-	100	99.209	ENSANAG00000020583	-	100	99.209	Aotus_nancymaae
ENSODEG00000011481	-	81	73.000	ENSANAG00000025417	-	99	75.918	Aotus_nancymaae
ENSODEG00000011481	-	54	78.065	ENSAMXG00000024373	-	94	77.778	Astyanax_mexicanus
ENSODEG00000011481	-	94	91.632	ENSAMXG00000035996	srsf1a	98	93.145	Astyanax_mexicanus
ENSODEG00000011481	-	100	99.597	ENSBTAG00000014766	SRSF1	100	99.597	Bos_taurus
ENSODEG00000011481	-	79	91.878	ENSCJAG00000008111	-	88	91.878	Callithrix_jacchus
ENSODEG00000011481	-	100	99.209	ENSCJAG00000041713	-	100	99.209	Callithrix_jacchus
ENSODEG00000011481	-	100	99.209	ENSCAFG00000017430	SRSF1	100	99.209	Canis_familiaris
ENSODEG00000011481	-	100	99.209	ENSCAFG00020025632	-	100	99.209	Canis_lupus_dingo
ENSODEG00000011481	-	100	99.597	ENSCHIG00000010787	SRSF1	100	99.597	Capra_hircus
ENSODEG00000011481	-	100	99.209	ENSTSYG00000013899	-	100	99.209	Carlito_syrichta
ENSODEG00000011481	-	100	99.597	ENSCPOG00000032681	-	100	99.597	Cavia_porcellus
ENSODEG00000011481	-	100	99.597	ENSCCAG00000029484	-	100	99.597	Cebus_capucinus
ENSODEG00000011481	-	100	99.209	ENSCATG00000042294	-	100	99.209	Cercocebus_atys
ENSODEG00000011481	-	100	99.597	ENSCLAG00000014707	-	100	99.597	Chinchilla_lanigera
ENSODEG00000011481	-	100	98.419	ENSCSAG00000005642	-	100	98.419	Chlorocebus_sabaeus
ENSODEG00000011481	-	100	99.597	ENSCHOG00000001899	SRSF1	100	99.597	Choloepus_hoffmanni
ENSODEG00000011481	-	100	98.387	ENSCPBG00000009851	-	100	98.387	Chrysemys_picta_bellii
ENSODEG00000011481	-	100	99.209	ENSCANG00000029726	-	100	99.209	Colobus_angolensis_palliatus
ENSODEG00000011481	-	100	99.209	ENSCGRG00001000670	Srsf1	100	99.209	Cricetulus_griseus_chok1gshd
ENSODEG00000011481	-	100	99.597	ENSCGRG00000005590	Srsf1	100	99.597	Cricetulus_griseus_crigri
ENSODEG00000011481	-	79	83.491	ENSCSEG00000009973	-	99	80.228	Cynoglossus_semilaevis
ENSODEG00000011481	-	78	91.327	ENSCSEG00000014272	-	98	84.553	Cynoglossus_semilaevis
ENSODEG00000011481	-	78	92.228	ENSCVAG00000018617	-	98	85.185	Cyprinodon_variegatus
ENSODEG00000011481	-	78	89.744	ENSCVAG00000005458	-	98	86.179	Cyprinodon_variegatus
ENSODEG00000011481	-	78	89.706	ENSDARG00000057691	srsf1a	98	92.095	Danio_rerio
ENSODEG00000011481	-	99	96.735	ENSDARG00000017843	srsf1b	99	96.735	Danio_rerio
ENSODEG00000011481	-	100	99.209	ENSDNOG00000011737	-	100	99.209	Dasypus_novemcinctus
ENSODEG00000011481	-	100	99.597	ENSDORG00000015082	Srsf1	100	99.597	Dipodomys_ordii
ENSODEG00000011481	-	74	98.370	ENSETEG00000005349	-	63	98.370	Echinops_telfairi
ENSODEG00000011481	-	100	99.209	ENSEASG00005002922	-	100	99.209	Equus_asinus_asinus
ENSODEG00000011481	-	100	99.597	ENSECAG00000016654	SRSF1	100	99.597	Equus_caballus
ENSODEG00000011481	-	74	99.457	ENSEEUG00000009255	-	63	99.457	Erinaceus_europaeus
ENSODEG00000011481	-	78	93.299	ENSELUG00000021646	srsf1a	98	79.839	Esox_lucius
ENSODEG00000011481	-	100	99.209	ENSFCAG00000002250	-	100	99.209	Felis_catus
ENSODEG00000011481	-	100	81.423	ENSFALG00000005062	-	100	81.423	Ficedula_albicollis
ENSODEG00000011481	-	100	99.597	ENSFDAG00000010646	-	100	99.597	Fukomys_damarensis
ENSODEG00000011481	-	88	86.547	ENSFHEG00000003174	srsf1a	98	85.185	Fundulus_heteroclitus
ENSODEG00000011481	-	90	86.404	ENSGMOG00000014787	-	99	82.645	Gadus_morhua
ENSODEG00000011481	-	100	98.387	ENSGALG00000005525	SRSF1	100	98.387	Gallus_gallus
ENSODEG00000011481	-	79	86.294	ENSGACG00000020621	srsf1b	99	74.286	Gasterosteus_aculeatus
ENSODEG00000011481	-	100	98.024	ENSGAGG00000022965	-	100	98.024	Gopherus_agassizii
ENSODEG00000011481	-	100	99.209	ENSGGOG00000004386	SRSF1	100	99.209	Gorilla_gorilla
ENSODEG00000011481	-	88	86.099	ENSHBUG00000016788	srsf1a	98	84.774	Haplochromis_burtoni
ENSODEG00000011481	-	87	100.000	ENSHGLG00000000669	-	100	100.000	Heterocephalus_glaber_female
ENSODEG00000011481	-	87	100.000	ENSHGLG00000000600	-	100	100.000	Heterocephalus_glaber_female
ENSODEG00000011481	-	100	99.597	ENSHGLG00100016906	-	100	99.597	Heterocephalus_glaber_male
ENSODEG00000011481	-	78	87.310	ENSHCOG00000018918	srsf1a	97	81.928	Hippocampus_comes
ENSODEG00000011481	-	100	95.565	ENSIPUG00000008750	srsf1b	100	95.565	Ictalurus_punctatus
ENSODEG00000011481	-	94	91.213	ENSIPUG00000017039	srsf1a	98	93.145	Ictalurus_punctatus
ENSODEG00000011481	-	100	99.597	ENSSTOG00000000243	-	100	99.597	Ictidomys_tridecemlineatus
ENSODEG00000011481	-	51	91.339	ENSJJAG00000014464	-	95	87.402	Jaculus_jaculus
ENSODEG00000011481	-	100	99.597	ENSJJAG00000000102	-	100	99.597	Jaculus_jaculus
ENSODEG00000011481	-	78	92.228	ENSKMAG00000019232	srsf1a	98	83.951	Kryptolebias_marmoratus
ENSODEG00000011481	-	88	85.650	ENSLBEG00000020864	-	98	84.362	Labrus_bergylta
ENSODEG00000011481	-	79	84.000	ENSLBEG00000015294	-	98	83.065	Labrus_bergylta
ENSODEG00000011481	-	79	93.401	ENSLACG00000014160	srsf1a	92	93.878	Latimeria_chalumnae
ENSODEG00000011481	-	100	96.774	ENSLOCG00000005994	srsf1a	100	96.774	Lepisosteus_oculatus
ENSODEG00000011481	-	100	99.597	ENSLAFG00000025743	SRSF1	100	99.597	Loxodonta_africana
ENSODEG00000011481	-	100	99.597	ENSMFAG00000040003	-	100	99.597	Macaca_fascicularis
ENSODEG00000011481	-	100	99.209	ENSMMUG00000004725	SRSF1	100	99.209	Macaca_mulatta
ENSODEG00000011481	-	100	96.443	ENSMMUG00000003260	-	100	96.443	Macaca_mulatta
ENSODEG00000011481	-	100	99.209	ENSMNEG00000027680	-	100	99.209	Macaca_nemestrina
ENSODEG00000011481	-	100	96.047	ENSMNEG00000015983	-	100	96.047	Macaca_nemestrina
ENSODEG00000011481	-	99	93.902	ENSMLEG00000015243	-	99	92.857	Mandrillus_leucophaeus
ENSODEG00000011481	-	100	99.597	ENSMLEG00000040509	SRSF1	100	99.597	Mandrillus_leucophaeus
ENSODEG00000011481	-	79	89.848	ENSMAMG00000019687	-	99	85.020	Mastacembelus_armatus
ENSODEG00000011481	-	78	92.228	ENSMAMG00000018454	-	98	85.185	Mastacembelus_armatus
ENSODEG00000011481	-	79	94.416	ENSMAMG00000019691	-	99	88.163	Mastacembelus_armatus
ENSODEG00000011481	-	100	99.597	ENSMAUG00000021845	Srsf1	100	99.597	Mesocricetus_auratus
ENSODEG00000011481	-	100	99.209	ENSMICG00000013639	-	100	99.209	Microcebus_murinus
ENSODEG00000011481	-	100	99.597	ENSMOCG00000001996	Srsf1	100	99.597	Microtus_ochrogaster
ENSODEG00000011481	-	88	85.202	ENSMMOG00000014354	srsf1a	98	78.099	Mola_mola
ENSODEG00000011481	-	74	98.378	ENSMODG00000014781	-	63	98.378	Monodelphis_domestica
ENSODEG00000011481	-	78	91.710	ENSMALG00000017129	-	75	88.601	Monopterus_albus
ENSODEG00000011481	-	82	77.451	ENSMALG00000007763	-	79	79.592	Monopterus_albus
ENSODEG00000011481	-	100	99.597	MGP_CAROLIEiJ_G0016943	Srsf1	100	99.597	Mus_caroli
ENSODEG00000011481	-	100	99.597	ENSMUSG00000018379	Srsf1	100	99.597	Mus_musculus
ENSODEG00000011481	-	100	99.597	MGP_PahariEiJ_G0018074	Srsf1	100	99.597	Mus_pahari
ENSODEG00000011481	-	100	99.597	MGP_SPRETEiJ_G0017790	Srsf1	100	99.597	Mus_spretus
ENSODEG00000011481	-	100	99.597	ENSMPUG00000015369	SRSF1	100	99.597	Mustela_putorius_furo
ENSODEG00000011481	-	100	99.597	ENSMLUG00000011040	SRSF1	100	99.597	Myotis_lucifugus
ENSODEG00000011481	-	82	90.148	ENSMLUG00000023995	-	99	90.283	Myotis_lucifugus
ENSODEG00000011481	-	100	99.597	ENSNGAG00000011395	Srsf1	100	99.597	Nannospalax_galili
ENSODEG00000011481	-	100	79.435	ENSNBRG00000008041	srsf1b	79	82.653	Neolamprologus_brichardi
ENSODEG00000011481	-	100	99.209	ENSNLEG00000008088	-	100	99.209	Nomascus_leucogenys
ENSODEG00000011481	-	51	97.638	ENSMEUG00000002783	-	100	97.638	Notamacropus_eugenii
ENSODEG00000011481	-	74	100.000	ENSOPRG00000001234	-	100	100.000	Ochotona_princeps
ENSODEG00000011481	-	78	91.710	ENSONIG00000013160	-	98	84.774	Oreochromis_niloticus
ENSODEG00000011481	-	96	90.295	ENSONIG00000004860	-	80	90.816	Oreochromis_niloticus
ENSODEG00000011481	-	98	70.565	ENSOCUG00000010894	-	75	72.251	Oryctolagus_cuniculus
ENSODEG00000011481	-	78	92.228	ENSORLG00000004580	srsf1a	98	85.185	Oryzias_latipes
ENSODEG00000011481	-	88	86.547	ENSORLG00020009456	srsf1a	98	85.185	Oryzias_latipes_hni
ENSODEG00000011481	-	88	86.547	ENSORLG00015014384	srsf1a	98	84.774	Oryzias_latipes_hsok
ENSODEG00000011481	-	71	90.341	ENSOMEG00000004106	srsf1a	92	82.743	Oryzias_melastigma
ENSODEG00000011481	-	100	99.597	ENSOGAG00000025950	-	100	99.597	Otolemur_garnettii
ENSODEG00000011481	-	100	94.758	ENSOARG00000008323	SRSF1	100	94.758	Ovis_aries
ENSODEG00000011481	-	100	99.597	ENSPPAG00000043403	-	100	99.597	Pan_paniscus
ENSODEG00000011481	-	100	99.597	ENSPPRG00000004238	-	100	99.597	Panthera_pardus
ENSODEG00000011481	-	100	99.209	ENSPTRG00000049077	SRSF1	100	99.209	Pan_troglodytes
ENSODEG00000011481	-	100	99.209	ENSPANG00000022305	-	100	99.209	Papio_anubis
ENSODEG00000011481	-	100	76.285	ENSPANG00000030275	-	79	96.324	Papio_anubis
ENSODEG00000011481	-	99	95.102	ENSPKIG00000007204	srsf1a	99	95.102	Paramormyrops_kingsleyae
ENSODEG00000011481	-	100	95.565	ENSPKIG00000012857	srsf1b	100	95.565	Paramormyrops_kingsleyae
ENSODEG00000011481	-	79	90.452	ENSPSIG00000009000	-	99	91.968	Pelodiscus_sinensis
ENSODEG00000011481	-	95	86.383	ENSPMGG00000005467	-	99	85.470	Periophthalmus_magnuspinnatus
ENSODEG00000011481	-	88	83.857	ENSPMGG00000013112	-	99	85.654	Periophthalmus_magnuspinnatus
ENSODEG00000011481	-	100	99.597	ENSPEMG00000021416	Srsf1	100	99.597	Peromyscus_maniculatus_bairdii
ENSODEG00000011481	-	100	98.795	ENSPCIG00000006076	-	100	98.795	Phascolarctos_cinereus
ENSODEG00000011481	-	79	89.899	ENSPFOG00000018325	-	86	85.714	Poecilia_formosa
ENSODEG00000011481	-	79	89.899	ENSPLAG00000008416	srsf1b	98	85.714	Poecilia_latipinna
ENSODEG00000011481	-	50	89.431	ENSPMEG00000014312	-	98	87.805	Poecilia_mexicana
ENSODEG00000011481	-	79	89.899	ENSPMEG00000002388	-	98	85.714	Poecilia_mexicana
ENSODEG00000011481	-	50	89.431	ENSPMEG00000020607	-	98	87.805	Poecilia_mexicana
ENSODEG00000011481	-	78	92.228	ENSPREG00000009667	srsf1a	98	85.185	Poecilia_reticulata
ENSODEG00000011481	-	100	99.597	ENSPPYG00000008240	SRSF1	100	99.597	Pongo_abelii
ENSODEG00000011481	-	100	99.597	ENSPCAG00000005199	SRSF1	100	99.597	Procavia_capensis
ENSODEG00000011481	-	100	99.597	ENSPCOG00000023654	-	100	99.597	Propithecus_coquereli
ENSODEG00000011481	-	80	76.238	ENSPCOG00000025736	-	94	76.410	Propithecus_coquereli
ENSODEG00000011481	-	75	100.000	ENSPVAG00000000519	-	75	100.000	Pteropus_vampyrus
ENSODEG00000011481	-	94	93.162	ENSPNAG00000022241	srsf1a	98	90.947	Pygocentrus_nattereri
ENSODEG00000011481	-	100	93.952	ENSPNAG00000014601	srsf1b	100	93.952	Pygocentrus_nattereri
ENSODEG00000011481	-	100	99.597	ENSRNOG00000050323	Srsf1	100	99.597	Rattus_norvegicus
ENSODEG00000011481	-	100	99.209	ENSRBIG00000034445	-	100	99.209	Rhinopithecus_bieti
ENSODEG00000011481	-	100	99.597	ENSRROG00000041506	-	100	99.597	Rhinopithecus_roxellana
ENSODEG00000011481	-	100	99.597	ENSSBOG00000025377	-	100	99.597	Saimiri_boliviensis_boliviensis
ENSODEG00000011481	-	100	98.795	ENSSHAG00000002552	-	100	98.795	Sarcophilus_harrisii
ENSODEG00000011481	-	100	95.968	ENSSFOG00015004800	srsf1a	99	95.968	Scleropages_formosus
ENSODEG00000011481	-	78	90.674	ENSSMAG00000007018	-	98	83.128	Scophthalmus_maximus
ENSODEG00000011481	-	94	86.667	ENSSMAG00000009719	-	99	86.220	Scophthalmus_maximus
ENSODEG00000011481	-	100	76.096	ENSSDUG00000003929	-	98	78.455	Seriola_dumerili
ENSODEG00000011481	-	88	85.650	ENSSDUG00000011303	-	98	84.362	Seriola_dumerili
ENSODEG00000011481	-	78	91.192	ENSSLDG00000010543	-	98	84.362	Seriola_lalandi_dorsalis
ENSODEG00000011481	-	95	76.271	ENSSLDG00000016895	-	98	76.230	Seriola_lalandi_dorsalis
ENSODEG00000011481	-	79	83.333	ENSSLDG00000016868	-	98	82.591	Seriola_lalandi_dorsalis
ENSODEG00000011481	-	74	99.457	ENSSARG00000010949	-	63	99.457	Sorex_araneus
ENSODEG00000011481	-	100	98.024	ENSSPUG00000000804	-	100	98.024	Sphenodon_punctatus
ENSODEG00000011481	-	79	87.560	ENSSPAG00000014152	-	98	84.496	Stegastes_partitus
ENSODEG00000011481	-	78	92.746	ENSSPAG00000022562	-	98	85.597	Stegastes_partitus
ENSODEG00000011481	-	100	99.597	ENSSSCG00000017626	-	100	99.597	Sus_scrofa
ENSODEG00000011481	-	74	98.370	ENSTGUG00000008416	-	100	98.370	Taeniopygia_guttata
ENSODEG00000011481	-	78	91.192	ENSTRUG00000003691	srsf1a	98	84.362	Takifugu_rubripes
ENSODEG00000011481	-	78	91.192	ENSTNIG00000016223	srsf1a	98	84.362	Tetraodon_nigroviridis
ENSODEG00000011481	-	74	97.826	ENSTBEG00000015378	-	63	97.826	Tupaia_belangeri
ENSODEG00000011481	-	74	100.000	ENSTTRG00000007310	SRSF1	100	100.000	Tursiops_truncatus
ENSODEG00000011481	-	100	99.597	ENSUAMG00000009858	SRSF1	100	99.597	Ursus_americanus
ENSODEG00000011481	-	100	99.209	ENSUMAG00000000455	-	100	99.209	Ursus_maritimus
ENSODEG00000011481	-	100	99.194	ENSVPAG00000010094	SRSF1	100	99.194	Vicugna_pacos
ENSODEG00000011481	-	100	99.209	ENSVVUG00000011882	-	100	99.209	Vulpes_vulpes
ENSODEG00000011481	-	100	95.565	ENSXETG00000008954	srsf1	100	91.011	Xenopus_tropicalis
ENSODEG00000011481	-	78	92.228	ENSXMAG00000011766	srsf1a	98	85.185	Xiphophorus_maculatus