EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000011502 (Gene tree)
Gene ID: 101591601
Gene Symbol: SND1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 442320 bases
Position: chrJH651675.1:3935360-4377679
Accession: 101591601
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000015577	TUDOR	PF00567.24	1.2e-28	1	1
ENSODEP00000015577	SNase	PF00565.17	1.6e-69	1	5
ENSODEP00000015577	SNase	PF00565.17	1.6e-69	2	5
ENSODEP00000015577	SNase	PF00565.17	1.6e-69	3	5
ENSODEP00000015577	SNase	PF00565.17	1.6e-69	4	5
ENSODEP00000015577	SNase	PF00565.17	1.6e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000015778	SND1-201	2730	XM_004642716	ENSODEP00000015577	909 (aa)	XP_004642773	UPI0003340096

Gene Model

Click here to download ENSODEG00000011502's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000011502's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000011502	SND1	100	98.242	ENSG00000197157	SND1	100	98.242	Homo_sapiens
ENSODEG00000011502	SND1	100	84.101	ENSAPOG00000017599	snd1	99	84.761	Acanthochromis_polyacanthus
ENSODEG00000011502	SND1	100	98.246	ENSAMEG00000004664	SND1	94	98.246	Ailuropoda_melanoleuca
ENSODEG00000011502	SND1	98	82.195	ENSACIG00000003551	snd1	99	82.071	Amphilophus_citrinellus
ENSODEG00000011502	SND1	100	83.991	ENSAOCG00000014166	snd1	99	84.538	Amphiprion_ocellaris
ENSODEG00000011502	SND1	100	83.991	ENSAPEG00000007067	snd1	99	84.538	Amphiprion_percula
ENSODEG00000011502	SND1	98	82.998	ENSATEG00000018475	snd1	88	84.265	Anabas_testudineus
ENSODEG00000011502	SND1	100	98.462	ENSANAG00000034463	SND1	100	98.462	Aotus_nancymaae
ENSODEG00000011502	SND1	100	83.315	ENSACLG00000022897	snd1	99	84.187	Astatotilapia_calliptera
ENSODEG00000011502	SND1	100	83.807	ENSAMXG00000016318	snd1	98	84.855	Astyanax_mexicanus
ENSODEG00000011502	SND1	100	98.352	ENSBTAG00000010692	SND1	100	98.352	Bos_taurus
ENSODEG00000011502	SND1	98	46.930	WBGene00006626	tsn-1	98	47.530	Caenorhabditis_elegans
ENSODEG00000011502	SND1	100	98.242	ENSCJAG00000017668	SND1	100	98.242	Callithrix_jacchus
ENSODEG00000011502	SND1	100	98.462	ENSCAFG00000001700	SND1	100	98.462	Canis_familiaris
ENSODEG00000011502	SND1	100	98.462	ENSCAFG00020021639	SND1	100	98.462	Canis_lupus_dingo
ENSODEG00000011502	SND1	100	98.681	ENSCHIG00000023390	SND1	100	98.681	Capra_hircus
ENSODEG00000011502	SND1	73	99.120	ENSTSYG00000004979	SND1	96	99.120	Carlito_syrichta
ENSODEG00000011502	SND1	99	85.333	ENSCAPG00000010677	SND1	98	85.317	Cavia_aperea
ENSODEG00000011502	SND1	100	98.462	ENSCPOG00000006251	SND1	100	98.462	Cavia_porcellus
ENSODEG00000011502	SND1	100	98.571	ENSCCAG00000036847	SND1	100	98.571	Cebus_capucinus
ENSODEG00000011502	SND1	100	98.462	ENSCATG00000035214	SND1	100	98.462	Cercocebus_atys
ENSODEG00000011502	SND1	100	98.791	ENSCLAG00000011796	SND1	100	98.791	Chinchilla_lanigera
ENSODEG00000011502	SND1	100	98.462	ENSCSAG00000010182	SND1	100	98.462	Chlorocebus_sabaeus
ENSODEG00000011502	SND1	78	88.235	ENSCHOG00000002218	SND1	86	88.235	Choloepus_hoffmanni
ENSODEG00000011502	SND1	99	91.951	ENSCPBG00000018094	SND1	99	92.531	Chrysemys_picta_bellii
ENSODEG00000011502	SND1	98	56.969	ENSCING00000000524	-	98	56.969	Ciona_intestinalis
ENSODEG00000011502	SND1	99	57.393	ENSCSAVG00000008807	-	99	57.743	Ciona_savignyi
ENSODEG00000011502	SND1	100	98.462	ENSCANG00000035119	SND1	100	98.462	Colobus_angolensis_palliatus
ENSODEG00000011502	SND1	100	97.143	ENSCGRG00001022514	Snd1	100	97.143	Cricetulus_griseus_chok1gshd
ENSODEG00000011502	SND1	97	97.398	ENSCGRG00000012277	Snd1	99	97.398	Cricetulus_griseus_crigri
ENSODEG00000011502	SND1	100	82.876	ENSCSEG00000008661	snd1	98	84.116	Cynoglossus_semilaevis
ENSODEG00000011502	SND1	100	83.974	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSODEG00000011502	SND1	99	84.607	ENSDARG00000006766	snd1	97	87.590	Danio_rerio
ENSODEG00000011502	SND1	97	95.603	ENSDNOG00000006795	SND1	100	95.603	Dasypus_novemcinctus
ENSODEG00000011502	SND1	100	98.571	ENSDORG00000000336	Snd1	100	98.571	Dipodomys_ordii
ENSODEG00000011502	SND1	97	51.092	FBgn0035121	Tudor-SN	97	51.092	Drosophila_melanogaster
ENSODEG00000011502	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSODEG00000011502	SND1	60	66.142	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSODEG00000011502	SND1	100	96.760	ENSEASG00005008513	SND1	100	96.760	Equus_asinus_asinus
ENSODEG00000011502	SND1	100	98.352	ENSECAG00000011451	SND1	100	98.352	Equus_caballus
ENSODEG00000011502	SND1	100	86.703	ENSEEUG00000014737	SND1	100	86.703	Erinaceus_europaeus
ENSODEG00000011502	SND1	99	82.237	ENSELUG00000001805	snd1	95	82.943	Esox_lucius
ENSODEG00000011502	SND1	100	98.462	ENSFCAG00000008289	SND1	100	98.462	Felis_catus
ENSODEG00000011502	SND1	100	98.791	ENSFDAG00000015881	SND1	100	98.791	Fukomys_damarensis
ENSODEG00000011502	SND1	100	81.847	ENSFHEG00000004093	snd1	97	84.848	Fundulus_heteroclitus
ENSODEG00000011502	SND1	64	74.011	ENSGMOG00000018932	snd1	64	74.011	Gadus_morhua
ENSODEG00000011502	SND1	99	85.206	ENSGAFG00000008421	snd1	99	85.231	Gambusia_affinis
ENSODEG00000011502	SND1	100	54.072	ENSGACG00000019793	snd1	98	54.264	Gasterosteus_aculeatus
ENSODEG00000011502	SND1	100	98.462	ENSGGOG00000009614	SND1	100	98.462	Gorilla_gorilla
ENSODEG00000011502	SND1	99	83.757	ENSHBUG00000019135	snd1	99	84.187	Haplochromis_burtoni
ENSODEG00000011502	SND1	100	98.462	ENSHGLG00000003618	SND1	100	98.462	Heterocephalus_glaber_female
ENSODEG00000011502	SND1	99	98.228	ENSHGLG00100012449	SND1	99	98.228	Heterocephalus_glaber_male
ENSODEG00000011502	SND1	100	82.895	ENSHCOG00000005266	snd1	98	83.893	Hippocampus_comes
ENSODEG00000011502	SND1	100	82.913	ENSIPUG00000013279	snd1	98	83.853	Ictalurus_punctatus
ENSODEG00000011502	SND1	100	98.571	ENSSTOG00000002140	SND1	100	98.571	Ictidomys_tridecemlineatus
ENSODEG00000011502	SND1	100	98.571	ENSJJAG00000009561	Snd1	100	98.571	Jaculus_jaculus
ENSODEG00000011502	SND1	100	83.754	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSODEG00000011502	SND1	100	85.235	ENSLBEG00000013563	snd1	99	83.537	Labrus_bergylta
ENSODEG00000011502	SND1	99	85.336	ENSLOCG00000015537	snd1	98	85.336	Lepisosteus_oculatus
ENSODEG00000011502	SND1	100	97.363	ENSLAFG00000009696	SND1	100	97.363	Loxodonta_africana
ENSODEG00000011502	SND1	100	98.462	ENSMFAG00000038114	SND1	100	98.462	Macaca_fascicularis
ENSODEG00000011502	SND1	100	98.462	ENSMMUG00000015432	SND1	100	98.462	Macaca_mulatta
ENSODEG00000011502	SND1	100	98.462	ENSMNEG00000039808	SND1	100	98.644	Macaca_nemestrina
ENSODEG00000011502	SND1	100	98.352	ENSMLEG00000029040	SND1	100	98.531	Mandrillus_leucophaeus
ENSODEG00000011502	SND1	100	83.425	ENSMAMG00000011739	snd1	98	84.487	Mastacembelus_armatus
ENSODEG00000011502	SND1	100	83.315	ENSMZEG00005005681	snd1	99	84.187	Maylandia_zebra
ENSODEG00000011502	SND1	100	98.462	ENSMICG00000000097	SND1	100	98.462	Microcebus_murinus
ENSODEG00000011502	SND1	100	97.802	ENSMOCG00000005040	Snd1	100	97.802	Microtus_ochrogaster
ENSODEG00000011502	SND1	100	83.772	ENSMMOG00000001795	snd1	99	84.316	Mola_mola
ENSODEG00000011502	SND1	99	95.318	ENSMODG00000015182	SND1	99	95.318	Monodelphis_domestica
ENSODEG00000011502	SND1	100	83.205	ENSMALG00000012071	snd1	99	84.205	Monopterus_albus
ENSODEG00000011502	SND1	100	97.692	MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	Mus_caroli
ENSODEG00000011502	SND1	100	97.473	ENSMUSG00000001424	Snd1	100	97.473	Mus_musculus
ENSODEG00000011502	SND1	100	97.692	MGP_PahariEiJ_G0021917	Snd1	100	97.976	Mus_pahari
ENSODEG00000011502	SND1	100	97.692	MGP_SPRETEiJ_G0029159	Snd1	100	97.692	Mus_spretus
ENSODEG00000011502	SND1	100	97.912	ENSMPUG00000006545	SND1	100	97.912	Mustela_putorius_furo
ENSODEG00000011502	SND1	97	96.760	ENSMLUG00000017130	SND1	99	96.760	Myotis_lucifugus
ENSODEG00000011502	SND1	100	97.912	ENSNGAG00000011186	Snd1	100	97.912	Nannospalax_galili
ENSODEG00000011502	SND1	100	83.205	ENSNBRG00000006681	snd1	99	84.076	Neolamprologus_brichardi
ENSODEG00000011502	SND1	100	98.462	ENSNLEG00000012263	SND1	100	98.644	Nomascus_leucogenys
ENSODEG00000011502	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSODEG00000011502	SND1	100	83.205	ENSONIG00000011481	snd1	96	84.076	Oreochromis_niloticus
ENSODEG00000011502	SND1	98	94.707	ENSOANG00000000817	SND1	99	94.091	Ornithorhynchus_anatinus
ENSODEG00000011502	SND1	100	97.582	ENSOCUG00000001620	SND1	100	97.582	Oryctolagus_cuniculus
ENSODEG00000011502	SND1	98	84.004	ENSORLG00000015201	snd1	98	84.004	Oryzias_latipes
ENSODEG00000011502	SND1	98	84.116	ENSORLG00020013991	snd1	98	84.116	Oryzias_latipes_hni
ENSODEG00000011502	SND1	98	84.116	ENSORLG00015012436	snd1	98	84.116	Oryzias_latipes_hsok
ENSODEG00000011502	SND1	100	82.986	ENSOMEG00000006406	snd1	98	84.228	Oryzias_melastigma
ENSODEG00000011502	SND1	100	97.917	ENSOGAG00000013356	SND1	94	97.917	Otolemur_garnettii
ENSODEG00000011502	SND1	97	96.045	ENSOARG00000002149	SND1	100	96.045	Ovis_aries
ENSODEG00000011502	SND1	100	98.352	ENSPPAG00000042947	SND1	100	98.352	Pan_paniscus
ENSODEG00000011502	SND1	100	98.462	ENSPPRG00000004494	SND1	100	98.462	Panthera_pardus
ENSODEG00000011502	SND1	100	98.352	ENSPTIG00000014214	SND1	100	98.352	Panthera_tigris_altaica
ENSODEG00000011502	SND1	100	98.352	ENSPTRG00000023911	SND1	100	98.352	Pan_troglodytes
ENSODEG00000011502	SND1	97	98.643	ENSPANG00000011997	SND1	99	98.643	Papio_anubis
ENSODEG00000011502	SND1	99	81.319	ENSPKIG00000023494	snd1	98	81.798	Paramormyrops_kingsleyae
ENSODEG00000011502	SND1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSODEG00000011502	SND1	100	97.912	ENSPEMG00000010240	Snd1	100	97.912	Peromyscus_maniculatus_bairdii
ENSODEG00000011502	SND1	97	73.898	ENSPMAG00000007915	-	99	73.898	Petromyzon_marinus
ENSODEG00000011502	SND1	99	95.764	ENSPCIG00000011561	SND1	99	95.764	Phascolarctos_cinereus
ENSODEG00000011502	SND1	99	84.650	ENSPFOG00000001557	snd1	99	84.650	Poecilia_formosa
ENSODEG00000011502	SND1	99	84.650	ENSPLAG00000018459	snd1	96	84.650	Poecilia_latipinna
ENSODEG00000011502	SND1	99	85.095	ENSPMEG00000006803	snd1	99	85.095	Poecilia_mexicana
ENSODEG00000011502	SND1	99	84.983	ENSPREG00000002189	snd1	99	84.983	Poecilia_reticulata
ENSODEG00000011502	SND1	93	98.263	ENSPPYG00000017972	SND1	100	98.263	Pongo_abelii
ENSODEG00000011502	SND1	99	86.065	ENSPCAG00000011305	SND1	99	86.065	Procavia_capensis
ENSODEG00000011502	SND1	100	98.242	ENSPCOG00000026791	SND1	100	98.418	Propithecus_coquereli
ENSODEG00000011502	SND1	100	96.593	ENSPVAG00000013945	SND1	100	96.593	Pteropus_vampyrus
ENSODEG00000011502	SND1	100	83.315	ENSPNYG00000000932	snd1	99	84.187	Pundamilia_nyererei
ENSODEG00000011502	SND1	100	83.899	ENSPNAG00000001206	snd1	98	84.667	Pygocentrus_nattereri
ENSODEG00000011502	SND1	100	97.250	ENSRNOG00000031173	Snd1	100	97.250	Rattus_norvegicus
ENSODEG00000011502	SND1	73	99.248	ENSRBIG00000027782	-	93	99.430	Rhinopithecus_bieti
ENSODEG00000011502	SND1	100	98.462	ENSRROG00000033020	SND1	100	98.462	Rhinopithecus_roxellana
ENSODEG00000011502	SND1	100	98.462	ENSSBOG00000032461	SND1	100	98.462	Saimiri_boliviensis_boliviensis
ENSODEG00000011502	SND1	98	92.568	ENSSHAG00000015359	SND1	100	92.568	Sarcophilus_harrisii
ENSODEG00000011502	SND1	98	83.685	ENSSFOG00015001103	snd1	98	83.685	Scleropages_formosus
ENSODEG00000011502	SND1	98	83.669	ENSSMAG00000001932	snd1	93	83.669	Scophthalmus_maximus
ENSODEG00000011502	SND1	100	83.882	ENSSDUG00000002699	snd1	92	84.538	Seriola_dumerili
ENSODEG00000011502	SND1	100	76.645	ENSSLDG00000001950	snd1	98	77.197	Seriola_lalandi_dorsalis
ENSODEG00000011502	SND1	86	98.113	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSODEG00000011502	SND1	73	87.826	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSODEG00000011502	SND1	76	84.915	ENSSPAG00000021398	snd1	96	86.911	Stegastes_partitus
ENSODEG00000011502	SND1	100	98.242	ENSSSCG00000016590	SND1	100	98.242	Sus_scrofa
ENSODEG00000011502	SND1	100	82.918	ENSTRUG00000014067	snd1	99	83.315	Takifugu_rubripes
ENSODEG00000011502	SND1	100	83.443	ENSTNIG00000011019	snd1	96	86.986	Tetraodon_nigroviridis
ENSODEG00000011502	SND1	93	92.807	ENSTBEG00000003999	SND1	100	92.807	Tupaia_belangeri
ENSODEG00000011502	SND1	100	93.736	ENSTTRG00000006059	SND1	100	93.736	Tursiops_truncatus
ENSODEG00000011502	SND1	71	90.130	ENSUAMG00000002820	-	86	90.054	Ursus_americanus
ENSODEG00000011502	SND1	91	98.099	ENSUAMG00000005604	-	93	98.099	Ursus_americanus
ENSODEG00000011502	SND1	100	98.462	ENSUMAG00000005960	SND1	100	98.462	Ursus_maritimus
ENSODEG00000011502	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSODEG00000011502	SND1	100	98.242	ENSVVUG00000007226	SND1	100	98.242	Vulpes_vulpes
ENSODEG00000011502	SND1	97	84.972	ENSXETG00000023043	snd1	100	84.897	Xenopus_tropicalis
ENSODEG00000011502	SND1	92	81.710	ENSXCOG00000013629	snd1	99	81.710	Xiphophorus_couchianus
ENSODEG00000011502	SND1	99	85.206	ENSXMAG00000011469	snd1	99	85.206	Xiphophorus_maculatus