EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000011712 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 5774 bases
Position: chrJH651797.1:1004292-1010065
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000015896	LSM	PF01423.22	2.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000016098	-	321	-	ENSODEP00000015896	106 (aa)	-	-
ENSODET00000016099	-	222	-	ENSODEP00000015897	73 (aa)	-	-

Gene Model

Click here to download ENSODEG00000011712's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000011712's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000011712	-	100	71.324	ENSODEG00000004519	-	100	63.971
ENSODEG00000011712	-	100	76.259	ENSODEG00000020549	-	100	76.259

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000011712	-	100	73.381	ENSG00000130520	LSM4	100	73.381	Homo_sapiens
ENSODEG00000011712	-	70	60.215	ENSAPOG00000005643	lsm4	97	59.459	Acanthochromis_polyacanthus
ENSODEG00000011712	-	99	73.188	ENSAMEG00000011162	LSM4	95	73.188	Ailuropoda_melanoleuca
ENSODEG00000011712	-	98	46.853	ENSAOCG00000006414	lsm4	97	60.690	Amphiprion_ocellaris
ENSODEG00000011712	-	70	60.215	ENSAPEG00000006238	lsm4	97	60.274	Amphiprion_percula
ENSODEG00000011712	-	96	62.222	ENSATEG00000016559	lsm4	88	62.222	Anabas_testudineus
ENSODEG00000011712	-	100	73.381	ENSANAG00000034659	LSM4	100	73.381	Aotus_nancymaae
ENSODEG00000011712	-	98	50.350	ENSACLG00000022738	lsm4	97	59.028	Astatotilapia_calliptera
ENSODEG00000011712	-	98	64.748	ENSAMXG00000016932	lsm4	96	64.748	Astyanax_mexicanus
ENSODEG00000011712	-	100	73.381	ENSBTAG00000008578	LSM4	100	73.381	Bos_taurus
ENSODEG00000011712	-	100	73.381	ENSCJAG00000014171	LSM4	100	73.381	Callithrix_jacchus
ENSODEG00000011712	-	99	73.188	ENSCAFG00000014900	LSM4	90	73.188	Canis_familiaris
ENSODEG00000011712	-	100	73.381	ENSCAFG00020012137	LSM4	100	73.381	Canis_lupus_dingo
ENSODEG00000011712	-	99	73.188	ENSCHIG00000010928	LSM4	91	73.188	Capra_hircus
ENSODEG00000011712	-	100	72.662	ENSTSYG00000030906	LSM4	100	72.662	Carlito_syrichta
ENSODEG00000011712	-	100	72.662	ENSCAPG00000014140	LSM4	100	72.662	Cavia_aperea
ENSODEG00000011712	-	100	72.662	ENSCPOG00000024117	LSM4	100	72.662	Cavia_porcellus
ENSODEG00000011712	-	100	73.381	ENSCCAG00000036308	LSM4	100	73.381	Cebus_capucinus
ENSODEG00000011712	-	100	73.381	ENSCATG00000029311	LSM4	100	73.381	Cercocebus_atys
ENSODEG00000011712	-	100	75.540	ENSCLAG00000010828	LSM4	100	75.540	Chinchilla_lanigera
ENSODEG00000011712	-	100	73.381	ENSCSAG00000005370	LSM4	100	73.381	Chlorocebus_sabaeus
ENSODEG00000011712	-	100	68.345	ENSCPBG00000012925	LSM4	100	68.345	Chrysemys_picta_bellii
ENSODEG00000011712	-	100	73.381	ENSCANG00000043686	LSM4	100	73.381	Colobus_angolensis_palliatus
ENSODEG00000011712	-	100	70.290	ENSCGRG00001014436	Lsm4	100	70.290	Cricetulus_griseus_chok1gshd
ENSODEG00000011712	-	70	60.215	ENSCSEG00000016127	lsm4	96	61.871	Cynoglossus_semilaevis
ENSODEG00000011712	-	68	60.440	ENSCVAG00000010601	lsm4	97	61.429	Cyprinodon_variegatus
ENSODEG00000011712	-	96	61.268	ENSDARG00000023852	lsm4	99	61.268	Danio_rerio
ENSODEG00000011712	-	100	74.101	ENSDORG00000024225	Lsm4	100	74.101	Dipodomys_ordii
ENSODEG00000011712	-	86	69.355	ENSETEG00000007762	-	100	69.355	Echinops_telfairi
ENSODEG00000011712	-	100	73.381	ENSECAG00000010141	LSM4	57	73.381	Equus_caballus
ENSODEG00000011712	-	100	73.381	ENSFCAG00000040580	LSM4	100	73.381	Felis_catus
ENSODEG00000011712	-	99	55.797	ENSFALG00000009478	LSM4	99	64.493	Ficedula_albicollis
ENSODEG00000011712	-	99	74.638	ENSFDAG00000010124	LSM4	100	74.638	Fukomys_damarensis
ENSODEG00000011712	-	100	68.345	ENSGALG00000003385	LSM4	100	68.345	Gallus_gallus
ENSODEG00000011712	-	98	51.799	ENSGAFG00000004903	lsm4	73	60.000	Gambusia_affinis
ENSODEG00000011712	-	92	61.364	ENSGACG00000008140	lsm4	87	61.364	Gasterosteus_aculeatus
ENSODEG00000011712	-	100	68.345	ENSGAGG00000017812	LSM4	100	68.345	Gopherus_agassizii
ENSODEG00000011712	-	100	73.381	ENSGGOG00000012914	-	100	73.381	Gorilla_gorilla
ENSODEG00000011712	-	98	50.704	ENSHBUG00000008858	lsm4	77	59.441	Haplochromis_burtoni
ENSODEG00000011712	-	100	73.381	ENSHGLG00000006568	LSM4	100	73.381	Heterocephalus_glaber_female
ENSODEG00000011712	-	57	64.516	ENSHGLG00100007894	LSM4	100	64.516	Heterocephalus_glaber_male
ENSODEG00000011712	-	70	60.215	ENSHCOG00000008819	lsm4	96	60.870	Hippocampus_comes
ENSODEG00000011712	-	98	64.748	ENSIPUG00000005368	Lsm4	96	64.748	Ictalurus_punctatus
ENSODEG00000011712	-	100	73.381	ENSSTOG00000016494	LSM4	100	73.381	Ictidomys_tridecemlineatus
ENSODEG00000011712	-	100	71.223	ENSJJAG00000017420	Lsm4	100	71.223	Jaculus_jaculus
ENSODEG00000011712	-	98	61.702	ENSKMAG00000005073	lsm4	97	61.702	Kryptolebias_marmoratus
ENSODEG00000011712	-	70	60.215	ENSLBEG00000027930	lsm4	97	59.310	Labrus_bergylta
ENSODEG00000011712	-	98	66.667	ENSLACG00000015861	LSM4	98	66.667	Latimeria_chalumnae
ENSODEG00000011712	-	98	65.217	ENSLOCG00000002025	lsm4	96	65.217	Lepisosteus_oculatus
ENSODEG00000011712	-	99	72.464	ENSLAFG00000017459	LSM4	99	72.464	Loxodonta_africana
ENSODEG00000011712	-	100	73.381	ENSMFAG00000031194	LSM4	100	73.381	Macaca_fascicularis
ENSODEG00000011712	-	100	73.381	ENSMMUG00000004405	LSM4	100	73.381	Macaca_mulatta
ENSODEG00000011712	-	100	73.381	ENSMNEG00000042899	LSM4	100	73.381	Macaca_nemestrina
ENSODEG00000011712	-	100	73.381	ENSMLEG00000027948	LSM4	100	73.381	Mandrillus_leucophaeus
ENSODEG00000011712	-	98	51.825	ENSMAMG00000006190	lsm4	65	54.206	Mastacembelus_armatus
ENSODEG00000011712	-	98	50.704	ENSMZEG00005016420	lsm4	97	59.441	Maylandia_zebra
ENSODEG00000011712	-	99	58.273	ENSMGAG00000004976	LSM4	99	63.768	Meleagris_gallopavo
ENSODEG00000011712	-	100	72.662	ENSMICG00000000222	LSM4	100	72.662	Microcebus_murinus
ENSODEG00000011712	-	100	71.014	ENSMOCG00000020861	Lsm4	100	71.014	Microtus_ochrogaster
ENSODEG00000011712	-	86	66.935	ENSMODG00000015044	-	100	66.935	Monodelphis_domestica
ENSODEG00000011712	-	98	62.143	ENSMALG00000018159	lsm4	97	62.143	Monopterus_albus
ENSODEG00000011712	-	100	71.014	MGP_CAROLIEiJ_G0031158	Lsm4	100	71.014	Mus_caroli
ENSODEG00000011712	-	100	71.014	ENSMUSG00000031848	Lsm4	100	71.014	Mus_musculus
ENSODEG00000011712	-	100	71.014	MGP_PahariEiJ_G0021623	Lsm4	100	71.014	Mus_pahari
ENSODEG00000011712	-	100	71.014	MGP_SPRETEiJ_G0032276	Lsm4	100	71.014	Mus_spretus
ENSODEG00000011712	-	100	73.381	ENSMPUG00000015589	LSM4	100	73.381	Mustela_putorius_furo
ENSODEG00000011712	-	99	73.188	ENSMLUG00000004010	LSM4	99	73.188	Myotis_lucifugus
ENSODEG00000011712	-	100	70.504	ENSNGAG00000008644	Lsm4	100	70.504	Nannospalax_galili
ENSODEG00000011712	-	86	64.516	ENSMEUG00000013229	LSM4	100	64.516	Notamacropus_eugenii
ENSODEG00000011712	-	86	64.516	ENSOPRG00000005575	LSM4	100	64.516	Ochotona_princeps
ENSODEG00000011712	-	98	50.350	ENSONIG00000012724	lsm4	97	59.028	Oreochromis_niloticus
ENSODEG00000011712	-	98	62.411	ENSORLG00000008391	lsm4	97	62.411	Oryzias_latipes
ENSODEG00000011712	-	98	62.411	ENSORLG00020014829	lsm4	97	62.411	Oryzias_latipes_hni
ENSODEG00000011712	-	98	63.121	ENSORLG00015010205	lsm4	97	63.121	Oryzias_latipes_hsok
ENSODEG00000011712	-	100	59.712	ENSOMEG00000003606	lsm4	95	59.712	Oryzias_melastigma
ENSODEG00000011712	-	93	70.455	ENSOARG00000012553	LSM4	94	68.908	Ovis_aries
ENSODEG00000011712	-	100	73.381	ENSPPAG00000044045	-	100	73.381	Pan_paniscus
ENSODEG00000011712	-	100	73.381	ENSPPRG00000018264	LSM4	100	73.381	Panthera_pardus
ENSODEG00000011712	-	99	73.188	ENSPTIG00000006306	LSM4	100	73.188	Panthera_tigris_altaica
ENSODEG00000011712	-	100	73.381	ENSPTRG00000031470	LSM4	100	73.381	Pan_troglodytes
ENSODEG00000011712	-	100	73.381	ENSPANG00000014399	LSM4	100	73.381	Papio_anubis
ENSODEG00000011712	-	98	65.942	ENSPKIG00000006154	lsm4	96	65.942	Paramormyrops_kingsleyae
ENSODEG00000011712	-	100	71.014	ENSPEMG00000001358	Lsm4	100	71.014	Peromyscus_maniculatus_bairdii
ENSODEG00000011712	-	98	51.799	ENSPFOG00000000570	lsm4	73	60.714	Poecilia_formosa
ENSODEG00000011712	-	98	50.725	ENSPLAG00000016267	lsm4	97	60.714	Poecilia_latipinna
ENSODEG00000011712	-	97	54.676	ENSPMEG00000016378	lsm4	97	60.714	Poecilia_mexicana
ENSODEG00000011712	-	70	60.215	ENSPREG00000011290	lsm4	73	61.429	Poecilia_reticulata
ENSODEG00000011712	-	100	73.381	ENSPPYG00000009736	LSM4	100	73.381	Pongo_abelii
ENSODEG00000011712	-	86	69.355	ENSPCAG00000008513	LSM4	100	69.355	Procavia_capensis
ENSODEG00000011712	-	100	72.662	ENSPCOG00000019837	LSM4	100	72.662	Propithecus_coquereli
ENSODEG00000011712	-	100	73.381	ENSPVAG00000015383	LSM4	100	73.381	Pteropus_vampyrus
ENSODEG00000011712	-	98	50.704	ENSPNYG00000016794	lsm4	97	59.441	Pundamilia_nyererei
ENSODEG00000011712	-	100	71.014	ENSRNOG00000019572	Lsm4	100	71.014	Rattus_norvegicus
ENSODEG00000011712	-	100	73.381	ENSRBIG00000024717	LSM4	100	73.381	Rhinopithecus_bieti
ENSODEG00000011712	-	100	73.381	ENSRROG00000045706	LSM4	100	73.381	Rhinopithecus_roxellana
ENSODEG00000011712	-	87	70.400	ENSSBOG00000022455	LSM4	100	70.400	Saimiri_boliviensis_boliviensis
ENSODEG00000011712	-	100	70.504	ENSSHAG00000011559	LSM4	100	70.504	Sarcophilus_harrisii
ENSODEG00000011712	-	98	63.768	ENSSFOG00015021067	lsm4	96	63.768	Scleropages_formosus
ENSODEG00000011712	-	70	60.215	ENSSMAG00000021020	lsm4	93	61.429	Scophthalmus_maximus
ENSODEG00000011712	-	70	60.215	ENSSDUG00000009588	lsm4	82	60.432	Seriola_dumerili
ENSODEG00000011712	-	70	60.215	ENSSLDG00000006827	lsm4	82	60.432	Seriola_lalandi_dorsalis
ENSODEG00000011712	-	70	60.215	ENSSPAG00000011615	lsm4	97	59.459	Stegastes_partitus
ENSODEG00000011712	-	100	73.381	ENSSSCG00000034314	LSM4	100	73.381	Sus_scrofa
ENSODEG00000011712	-	98	60.714	ENSTRUG00000021737	lsm4	97	60.714	Takifugu_rubripes
ENSODEG00000011712	-	98	60.284	ENSTNIG00000010191	lsm4	97	60.284	Tetraodon_nigroviridis
ENSODEG00000011712	-	99	73.188	ENSUAMG00000000665	LSM4	99	73.188	Ursus_americanus
ENSODEG00000011712	-	100	73.381	ENSUMAG00000009013	LSM4	100	73.381	Ursus_maritimus
ENSODEG00000011712	-	99	73.188	ENSVVUG00000008136	LSM4	71	73.188	Vulpes_vulpes
ENSODEG00000011712	-	100	66.906	ENSXETG00000024933	lsm4	100	66.906	Xenopus_tropicalis
ENSODEG00000011712	-	98	60.000	ENSXMAG00000026672	lsm4	73	60.000	Xiphophorus_maculatus