EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000011816 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: H/ACA ribonucleoprotein complex subunit 4 pseudogene
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 1563 bases
Position: chrJH651547.1:2452316-2453878
Accession: 101572770
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000016055	TruB_N	PF01509.18	1.4e-21	1	1
ENSODEP00000016055	PUA	PF01472.20	5e-18	1	1
ENSODEP00000016055	DKCLD	PF08068.12	1e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000016259	-	1533	-	ENSODEP00000016055	510 (aa)	-	-

Gene Model

Click here to download ENSODEG00000011816's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000011816's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000011816	-	59	83.333	ENSODEG00000000549	-	100	83.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000011816	-	91	93.978	ENSG00000130826	DKC1	99	98.049	Homo_sapiens
ENSODEG00000011816	-	85	82.989	ENSAPOG00000007799	dkc1	81	85.401	Acanthochromis_polyacanthus
ENSODEG00000011816	-	89	93.612	ENSAMEG00000002776	DKC1	86	94.495	Ailuropoda_melanoleuca
ENSODEG00000011816	-	79	86.849	ENSACIG00000022614	dkc1	84	86.849	Amphilophus_citrinellus
ENSODEG00000011816	-	85	82.529	ENSAOCG00000013159	dkc1	80	86.616	Amphiprion_ocellaris
ENSODEG00000011816	-	85	82.529	ENSAPEG00000002284	dkc1	81	86.616	Amphiprion_percula
ENSODEG00000011816	-	79	85.158	ENSATEG00000013682	dkc1	81	84.746	Anabas_testudineus
ENSODEG00000011816	-	91	83.621	ENSACAG00000015600	DKC1	75	87.097	Anolis_carolinensis
ENSODEG00000011816	-	91	92.903	ENSANAG00000022732	DKC1	85	95.642	Aotus_nancymaae
ENSODEG00000011816	-	78	87.879	ENSACLG00000015605	dkc1	81	87.437	Astatotilapia_calliptera
ENSODEG00000011816	-	86	82.766	ENSAMXG00000017108	dkc1	79	87.719	Astyanax_mexicanus
ENSODEG00000011816	-	90	92.842	ENSBTAG00000013045	DKC1	88	93.049	Bos_taurus
ENSODEG00000011816	-	89	63.436	WBGene00010478	K01G5.5	91	67.726	Caenorhabditis_elegans
ENSODEG00000011816	-	90	94.118	ENSCJAG00000004210	DKC1	85	95.413	Callithrix_jacchus
ENSODEG00000011816	-	85	81.922	ENSCAFG00000009311	-	86	81.136	Canis_familiaris
ENSODEG00000011816	-	89	91.810	ENSCAFG00000019620	-	84	94.725	Canis_familiaris
ENSODEG00000011816	-	85	81.986	ENSCAFG00020009379	-	83	81.193	Canis_lupus_dingo
ENSODEG00000011816	-	89	91.810	ENSCAFG00020008918	-	84	94.725	Canis_lupus_dingo
ENSODEG00000011816	-	90	92.842	ENSCHIG00000017392	DKC1	88	93.049	Capra_hircus
ENSODEG00000011816	-	90	92.751	ENSTSYG00000007681	DKC1	82	95.833	Carlito_syrichta
ENSODEG00000011816	-	84	91.860	ENSCAPG00000003342	DKC1	86	97.098	Cavia_aperea
ENSODEG00000011816	-	100	91.033	ENSCPOG00000008825	DKC1	100	91.033	Cavia_porcellus
ENSODEG00000011816	-	91	83.871	ENSCCAG00000027418	DKC1	83	85.550	Cebus_capucinus
ENSODEG00000011816	-	91	93.118	ENSCATG00000033602	DKC1	85	95.183	Cercocebus_atys
ENSODEG00000011816	-	99	92.110	ENSCLAG00000000720	DKC1	85	97.203	Chinchilla_lanigera
ENSODEG00000011816	-	91	93.333	ENSCSAG00000006706	DKC1	85	95.183	Chlorocebus_sabaeus
ENSODEG00000011816	-	89	84.396	ENSCPBG00000005858	DKC1	88	90.268	Chrysemys_picta_bellii
ENSODEG00000011816	-	83	75.414	ENSCING00000004599	-	79	76.942	Ciona_intestinalis
ENSODEG00000011816	-	82	75.060	ENSCSAVG00000010047	-	93	75.300	Ciona_savignyi
ENSODEG00000011816	-	91	93.333	ENSCANG00000027987	DKC1	85	95.183	Colobus_angolensis_palliatus
ENSODEG00000011816	-	90	66.157	ENSCGRG00001016789	-	83	69.249	Cricetulus_griseus_chok1gshd
ENSODEG00000011816	-	91	91.613	ENSCGRG00001014574	-	85	94.037	Cricetulus_griseus_chok1gshd
ENSODEG00000011816	-	90	66.157	ENSCGRG00000014809	-	81	69.249	Cricetulus_griseus_crigri
ENSODEG00000011816	-	91	91.613	ENSCGRG00000016075	-	85	94.037	Cricetulus_griseus_crigri
ENSODEG00000011816	-	87	80.269	ENSCSEG00000012633	dkc1	84	87.626	Cynoglossus_semilaevis
ENSODEG00000011816	-	77	87.563	ENSCVAG00000010155	dkc1	77	87.374	Cyprinodon_variegatus
ENSODEG00000011816	-	79	86.139	ENSDARG00000016484	dkc1	79	86.967	Danio_rerio
ENSODEG00000011816	-	100	89.084	ENSDNOG00000004218	DKC1	85	95.183	Dasypus_novemcinctus
ENSODEG00000011816	-	59	82.333	ENSDORG00000013566	-	100	82.333	Dipodomys_ordii
ENSODEG00000011816	-	87	69.457	FBgn0259937	Nop60B	89	68.473	Drosophila_melanogaster
ENSODEG00000011816	-	91	86.695	ENSETEG00000016095	DKC1	85	93.079	Echinops_telfairi
ENSODEG00000011816	-	50	63.281	ENSEBUG00000016062	dkc1	76	73.196	Eptatretus_burgeri
ENSODEG00000011816	-	67	77.126	ENSEBUG00000015962	dkc1	99	81.570	Eptatretus_burgeri
ENSODEG00000011816	-	91	90.275	ENSEASG00005007484	DKC1	84	94.495	Equus_asinus_asinus
ENSODEG00000011816	-	91	90.275	ENSECAG00000023524	DKC1	84	94.495	Equus_caballus
ENSODEG00000011816	-	83	90.588	ENSEEUG00000003323	DKC1	96	92.875	Erinaceus_europaeus
ENSODEG00000011816	-	91	80.086	ENSELUG00000014538	dkc1	83	84.915	Esox_lucius
ENSODEG00000011816	-	90	92.157	ENSFCAG00000006577	DKC1	86	94.037	Felis_catus
ENSODEG00000011816	-	86	84.199	ENSFALG00000011496	DKC1	79	86.298	Ficedula_albicollis
ENSODEG00000011816	-	89	93.640	ENSFDAG00000002516	DKC1	85	95.128	Fukomys_damarensis
ENSODEG00000011816	-	85	82.028	ENSFHEG00000004627	dkc1	79	86.650	Fundulus_heteroclitus
ENSODEG00000011816	-	77	84.143	ENSGMOG00000017277	dkc1	100	84.143	Gadus_morhua
ENSODEG00000011816	-	85	87.615	ENSGALG00000005054	DKC1	80	88.702	Gallus_gallus
ENSODEG00000011816	-	85	82.339	ENSGAFG00000011486	dkc1	69	86.967	Gambusia_affinis
ENSODEG00000011816	-	78	88.384	ENSGACG00000004373	dkc1	96	89.666	Gasterosteus_aculeatus
ENSODEG00000011816	-	89	84.176	ENSGAGG00000011330	DKC1	84	88.194	Gopherus_agassizii
ENSODEG00000011816	-	91	93.978	ENSGGOG00000001045	DKC1	85	95.872	Gorilla_gorilla
ENSODEG00000011816	-	86	82.192	ENSHBUG00000012436	dkc1	80	87.032	Haplochromis_burtoni
ENSODEG00000011816	-	91	92.751	ENSHGLG00000000649	DKC1	84	94.495	Heterocephalus_glaber_female
ENSODEG00000011816	-	90	93.275	ENSHGLG00100001153	DKC1	84	95.093	Heterocephalus_glaber_male
ENSODEG00000011816	-	85	82.609	ENSHCOG00000021099	dkc1	79	87.218	Hippocampus_comes
ENSODEG00000011816	-	86	81.777	ENSIPUG00000010309	dkc1	79	85.610	Ictalurus_punctatus
ENSODEG00000011816	-	91	92.275	ENSSTOG00000001074	-	90	94.279	Ictidomys_tridecemlineatus
ENSODEG00000011816	-	91	80.728	ENSSTOG00000011904	-	81	81.963	Ictidomys_tridecemlineatus
ENSODEG00000011816	-	91	83.226	ENSSTOG00000020149	-	86	84.174	Ictidomys_tridecemlineatus
ENSODEG00000011816	-	59	82.000	ENSJJAG00000010086	-	100	82.000	Jaculus_jaculus
ENSODEG00000011816	-	86	79.863	ENSKMAG00000008010	dkc1	82	83.863	Kryptolebias_marmoratus
ENSODEG00000011816	-	85	81.839	ENSLBEG00000019122	dkc1	83	86.420	Labrus_bergylta
ENSODEG00000011816	-	86	83.184	ENSLACG00000014025	DKC1	91	88.945	Latimeria_chalumnae
ENSODEG00000011816	-	86	83.864	ENSLOCG00000013713	dkc1	82	89.086	Lepisosteus_oculatus
ENSODEG00000011816	-	87	92.841	ENSLAFG00000000221	DKC1	81	95.673	Loxodonta_africana
ENSODEG00000011816	-	91	93.118	ENSMFAG00000032398	DKC1	73	95.183	Macaca_fascicularis
ENSODEG00000011816	-	91	93.333	ENSMMUG00000005768	DKC1	85	95.183	Macaca_mulatta
ENSODEG00000011816	-	91	93.333	ENSMNEG00000034503	DKC1	85	95.183	Macaca_nemestrina
ENSODEG00000011816	-	91	93.333	ENSMLEG00000034422	DKC1	85	95.183	Mandrillus_leucophaeus
ENSODEG00000011816	-	80	86.946	ENSMAMG00000005427	dkc1	90	87.562	Mastacembelus_armatus
ENSODEG00000011816	-	86	82.420	ENSMZEG00005014503	dkc1	80	87.282	Maylandia_zebra
ENSODEG00000011816	-	78	87.437	ENSMGAG00000009238	DKC1	81	88.654	Meleagris_gallopavo
ENSODEG00000011816	-	59	82.333	ENSMAUG00000016454	-	100	82.333	Mesocricetus_auratus
ENSODEG00000011816	-	80	82.927	ENSMICG00000002818	-	99	82.692	Microcebus_murinus
ENSODEG00000011816	-	91	91.613	ENSMICG00000038751	-	87	94.483	Microcebus_murinus
ENSODEG00000011816	-	59	79.333	ENSMOCG00000001169	-	100	79.333	Microtus_ochrogaster
ENSODEG00000011816	-	78	87.626	ENSMMOG00000020348	dkc1	87	87.186	Mola_mola
ENSODEG00000011816	-	86	80.638	ENSMALG00000009454	dkc1	81	85.122	Monopterus_albus
ENSODEG00000011816	-	90	81.370	MGP_CAROLIEiJ_G0033191	Dkc1	100	91.892	Mus_caroli
ENSODEG00000011816	-	90	92.157	ENSMUSG00000031403	Dkc1	100	82.759	Mus_musculus
ENSODEG00000011816	-	91	91.398	MGP_PahariEiJ_G0031735	Dkc1	100	82.333	Mus_pahari
ENSODEG00000011816	-	90	92.375	MGP_SPRETEiJ_G0034351	Dkc1	100	82.333	Mus_spretus
ENSODEG00000011816	-	90	90.832	ENSMPUG00000016136	DKC1	81	94.037	Mustela_putorius_furo
ENSODEG00000011816	-	90	86.057	ENSMLUG00000011918	DKC1	83	89.607	Myotis_lucifugus
ENSODEG00000011816	-	59	82.333	ENSNGAG00000015724	-	100	82.333	Nannospalax_galili
ENSODEG00000011816	-	78	88.384	ENSNBRG00000005638	dkc1	80	87.940	Neolamprologus_brichardi
ENSODEG00000011816	-	91	93.763	ENSNLEG00000014323	DKC1	85	95.872	Nomascus_leucogenys
ENSODEG00000011816	-	82	85.782	ENSMEUG00000001066	DKC1	91	86.364	Notamacropus_eugenii
ENSODEG00000011816	-	99	73.465	ENSOPRG00000005248	DKC1	73	88.251	Ochotona_princeps
ENSODEG00000011816	-	86	83.790	ENSONIG00000013889	dkc1	83	86.019	Oreochromis_niloticus
ENSODEG00000011816	-	57	65.333	ENSOANG00000022295	-	70	73.016	Ornithorhynchus_anatinus
ENSODEG00000011816	-	83	91.038	ENSOANG00000008713	-	81	93.924	Ornithorhynchus_anatinus
ENSODEG00000011816	-	91	93.333	ENSOCUG00000012646	DKC1	85	95.183	Oryctolagus_cuniculus
ENSODEG00000011816	-	85	81.149	ENSORLG00000018748	dkc1	79	85.500	Oryzias_latipes
ENSODEG00000011816	-	79	85.360	ENSOMEG00000005786	dkc1	82	85.774	Oryzias_melastigma
ENSODEG00000011816	-	91	91.789	ENSOGAG00000003399	DKC1	83	95.172	Otolemur_garnettii
ENSODEG00000011816	-	90	91.974	ENSOARG00000003047	DKC1	88	92.152	Ovis_aries
ENSODEG00000011816	-	91	94.194	ENSPPAG00000023820	DKC1	85	95.872	Pan_paniscus
ENSODEG00000011816	-	90	92.157	ENSPPRG00000009104	DKC1	86	94.037	Panthera_pardus
ENSODEG00000011816	-	89	90.088	ENSPTIG00000017469	DKC1	84	95.904	Panthera_tigris_altaica
ENSODEG00000011816	-	91	93.978	ENSPTRG00000022449	DKC1	85	95.872	Pan_troglodytes
ENSODEG00000011816	-	91	93.978	ENSPTRG00000043416	-	74	95.872	Pan_troglodytes
ENSODEG00000011816	-	91	93.333	ENSPANG00000011978	DKC1	85	95.183	Papio_anubis
ENSODEG00000011816	-	86	81.963	ENSPKIG00000008443	dkc1	86	86.275	Paramormyrops_kingsleyae
ENSODEG00000011816	-	72	90.323	ENSPSIG00000013765	DKC1	86	93.277	Pelodiscus_sinensis
ENSODEG00000011816	-	86	76.802	ENSPMGG00000004097	dkc1	73	83.333	Periophthalmus_magnuspinnatus
ENSODEG00000011816	-	72	94.872	ENSPEMG00000013348	Dkc1	82	94.872	Peromyscus_maniculatus_bairdii
ENSODEG00000011816	-	88	87.528	ENSPCIG00000016706	DKC1	72	89.744	Phascolarctos_cinereus
ENSODEG00000011816	-	86	82.609	ENSPFOG00000018653	dkc1	80	87.250	Poecilia_formosa
ENSODEG00000011816	-	86	82.609	ENSPLAG00000003272	dkc1	72	87.250	Poecilia_latipinna
ENSODEG00000011816	-	86	82.167	ENSPMEG00000010413	dkc1	80	87.250	Poecilia_mexicana
ENSODEG00000011816	-	86	82.380	ENSPREG00000004100	dkc1	77	87.626	Poecilia_reticulata
ENSODEG00000011816	-	90	94.130	ENSPPYG00000020892	DKC1	84	96.495	Pongo_abelii
ENSODEG00000011816	-	73	93.583	ENSPCAG00000015034	DKC1	73	93.583	Procavia_capensis
ENSODEG00000011816	-	100	90.078	ENSPCOG00000026874	DKC1	85	94.954	Propithecus_coquereli
ENSODEG00000011816	-	91	89.827	ENSPVAG00000009222	DKC1	87	92.890	Pteropus_vampyrus
ENSODEG00000011816	-	86	80.942	ENSPNYG00000020063	dkc1	79	87.879	Pundamilia_nyererei
ENSODEG00000011816	-	90	80.828	ENSPNAG00000005780	dkc1	80	86.816	Pygocentrus_nattereri
ENSODEG00000011816	-	90	84.416	ENSRNOG00000055562	Dkc1	86	86.728	Rattus_norvegicus
ENSODEG00000011816	-	91	93.333	ENSRBIG00000028457	DKC1	73	95.183	Rhinopithecus_bieti
ENSODEG00000011816	-	91	93.333	ENSRROG00000044780	DKC1	85	95.183	Rhinopithecus_roxellana
ENSODEG00000011816	-	76	71.100	YLR175W	-	81	71.100	Saccharomyces_cerevisiae
ENSODEG00000011816	-	90	94.105	ENSSBOG00000033746	DKC1	85	95.413	Saimiri_boliviensis_boliviensis
ENSODEG00000011816	-	89	87.500	ENSSHAG00000002463	DKC1	92	89.474	Sarcophilus_harrisii
ENSODEG00000011816	-	91	79.870	ENSSFOG00015009585	dkc1	85	82.989	Scleropages_formosus
ENSODEG00000011816	-	90	79.783	ENSSMAG00000002552	dkc1	82	86.241	Scophthalmus_maximus
ENSODEG00000011816	-	89	80.828	ENSSDUG00000009963	dkc1	82	86.585	Seriola_dumerili
ENSODEG00000011816	-	87	81.778	ENSSLDG00000019342	dkc1	85	87.010	Seriola_lalandi_dorsalis
ENSODEG00000011816	-	89	84.649	ENSSARG00000001822	DKC1	86	87.179	Sorex_araneus
ENSODEG00000011816	-	88	84.279	ENSSPUG00000018907	DKC1	81	87.588	Sphenodon_punctatus
ENSODEG00000011816	-	85	82.069	ENSSPAG00000002585	dkc1	77	86.600	Stegastes_partitus
ENSODEG00000011816	-	100	85.988	ENSSSCG00000012823	DKC1	91	94.037	Sus_scrofa
ENSODEG00000011816	-	78	86.500	ENSTGUG00000006781	DKC1	84	88.064	Taeniopygia_guttata
ENSODEG00000011816	-	77	88.101	ENSTRUG00000004413	dkc1	79	88.101	Takifugu_rubripes
ENSODEG00000011816	-	85	66.890	ENSTNIG00000002582	dkc1	82	69.286	Tetraodon_nigroviridis
ENSODEG00000011816	-	61	91.346	ENSTBEG00000011262	DKC1	79	94.406	Tupaia_belangeri
ENSODEG00000011816	-	54	98.195	ENSTTRG00000008089	DKC1	55	98.195	Tursiops_truncatus
ENSODEG00000011816	-	89	91.810	ENSUAMG00000022721	DKC1	91	95.128	Ursus_americanus
ENSODEG00000011816	-	89	91.757	ENSUMAG00000016899	DKC1	92	97.619	Ursus_maritimus
ENSODEG00000011816	-	85	75.854	ENSVVUG00000021671	-	81	77.169	Vulpes_vulpes
ENSODEG00000011816	-	88	90.773	ENSVVUG00000020734	-	75	94.226	Vulpes_vulpes
ENSODEG00000011816	-	90	81.659	ENSXETG00000032517	DKC1	82	88.107	Xenopus_tropicalis
ENSODEG00000011816	-	86	81.735	ENSXCOG00000005498	dkc1	85	87.121	Xiphophorus_couchianus
ENSODEG00000011816	-	86	82.151	ENSXMAG00000004919	dkc1	80	86.967	Xiphophorus_maculatus