EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000012163 (Gene tree)
Gene ID: 101568693
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 93487 bases
Position: chrJH651578.1:8223163-8316649
Accession: 101568693
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000016518	ResIII	PF04851.15	4.8e-12	1	1
ENSODEP00000016518	DEAD	PF00270.29	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000016730	SMARCA1-201	3162	XM_004634520	ENSODEP00000016518	1053 (aa)	XP_012370881	UPI0003340014

Gene Model

Click here to download ENSODEG00000012163's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000012163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000012163	SMARCA1	55	41.455	ENSODEG00000002494	CHD1L	62	41.624
ENSODEG00000012163	SMARCA1	52	32.231	ENSODEG00000002650	-	78	32.231
ENSODEG00000012163	SMARCA1	52	31.856	ENSODEG00000019564	-	65	31.856
ENSODEG00000012163	SMARCA1	53	30.152	ENSODEG00000002328	ERCC6L	53	30.152
ENSODEG00000012163	SMARCA1	50	46.591	ENSODEG00000015916	HELLS	64	46.591

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000012163	SMARCA1	100	96.490	ENSG00000102038	SMARCA1	100	96.490	Homo_sapiens
ENSODEG00000012163	SMARCA1	90	83.246	ENSAPOG00000016035	smarca5	96	83.260	Acanthochromis_polyacanthus
ENSODEG00000012163	SMARCA1	99	94.842	ENSAMEG00000015218	SMARCA1	96	95.521	Ailuropoda_melanoleuca
ENSODEG00000012163	SMARCA1	83	83.676	ENSACIG00000016982	smarca5	97	83.597	Amphilophus_citrinellus
ENSODEG00000012163	SMARCA1	90	83.246	ENSAOCG00000015578	smarca5	96	80.437	Amphiprion_ocellaris
ENSODEG00000012163	SMARCA1	90	83.246	ENSAPEG00000011117	smarca5	97	83.852	Amphiprion_percula
ENSODEG00000012163	SMARCA1	95	80.259	ENSATEG00000012894	smarca5	96	80.259	Anabas_testudineus
ENSODEG00000012163	SMARCA1	91	91.509	ENSAPLG00000013149	SMARCA1	97	91.228	Anas_platyrhynchos
ENSODEG00000012163	SMARCA1	97	88.813	ENSACAG00000011376	SMARCA1	96	88.813	Anolis_carolinensis
ENSODEG00000012163	SMARCA1	97	91.042	ENSANAG00000023098	SMARCA1	96	91.237	Aotus_nancymaae
ENSODEG00000012163	SMARCA1	91	83.037	ENSACLG00000025356	smarca5	97	80.217	Astatotilapia_calliptera
ENSODEG00000012163	SMARCA1	88	87.097	ENSAMXG00000011227	smarca1	99	87.796	Astyanax_mexicanus
ENSODEG00000012163	SMARCA1	95	80.558	ENSAMXG00000005709	smarca5	96	80.452	Astyanax_mexicanus
ENSODEG00000012163	SMARCA1	99	95.243	ENSBTAG00000002292	SMARCA1	98	96.023	Bos_taurus
ENSODEG00000012163	SMARCA1	92	63.136	WBGene00002169	isw-1	95	63.136	Caenorhabditis_elegans
ENSODEG00000012163	SMARCA1	99	96.371	ENSCJAG00000002868	SMARCA1	98	96.371	Callithrix_jacchus
ENSODEG00000012163	SMARCA1	99	86.325	ENSCAFG00000018673	SMARCA1	97	85.936	Canis_familiaris
ENSODEG00000012163	SMARCA1	99	95.224	ENSCAFG00020001751	SMARCA1	98	95.224	Canis_lupus_dingo
ENSODEG00000012163	SMARCA1	100	95.270	ENSCHIG00000009837	SMARCA1	98	96.046	Capra_hircus
ENSODEG00000012163	SMARCA1	95	96.100	ENSTSYG00000004240	SMARCA1	99	95.205	Carlito_syrichta
ENSODEG00000012163	SMARCA1	100	96.300	ENSCPOG00000013601	SMARCA1	100	96.300	Cavia_porcellus
ENSODEG00000012163	SMARCA1	97	92.989	ENSCCAG00000030817	SMARCA1	96	93.184	Cebus_capucinus
ENSODEG00000012163	SMARCA1	99	96.466	ENSCATG00000015921	SMARCA1	100	95.446	Cercocebus_atys
ENSODEG00000012163	SMARCA1	100	97.533	ENSCLAG00000002171	SMARCA1	100	97.533	Chinchilla_lanigera
ENSODEG00000012163	SMARCA1	99	95.511	ENSCSAG00000008460	SMARCA1	98	95.511	Chlorocebus_sabaeus
ENSODEG00000012163	SMARCA1	94	90.900	ENSCPBG00000001146	SMARCA1	94	90.986	Chrysemys_picta_bellii
ENSODEG00000012163	SMARCA1	92	73.511	ENSCING00000004110	swi/snf	95	73.511	Ciona_intestinalis
ENSODEG00000012163	SMARCA1	92	72.403	ENSCSAVG00000004620	-	100	73.077	Ciona_savignyi
ENSODEG00000012163	SMARCA1	99	96.371	ENSCANG00000007183	SMARCA1	98	96.371	Colobus_angolensis_palliatus
ENSODEG00000012163	SMARCA1	100	93.460	ENSCGRG00001010776	Smarca1	98	94.686	Cricetulus_griseus_chok1gshd
ENSODEG00000012163	SMARCA1	95	94.985	ENSCGRG00000015301	Smarca1	99	95.080	Cricetulus_griseus_crigri
ENSODEG00000012163	SMARCA1	92	82.730	ENSCSEG00000000328	smarca5	96	80.478	Cynoglossus_semilaevis
ENSODEG00000012163	SMARCA1	91	82.513	ENSCVAG00000008668	smarca5	97	83.154	Cyprinodon_variegatus
ENSODEG00000012163	SMARCA1	91	82.672	ENSDARG00000052348	smarca5	92	83.178	Danio_rerio
ENSODEG00000012163	SMARCA1	93	84.294	ENSDARG00000012776	smarca1	97	82.739	Danio_rerio
ENSODEG00000012163	SMARCA1	98	93.191	ENSDNOG00000004315	SMARCA1	98	93.191	Dasypus_novemcinctus
ENSODEG00000012163	SMARCA1	100	94.682	ENSDORG00000009270	Smarca1	98	94.773	Dipodomys_ordii
ENSODEG00000012163	SMARCA1	91	72.718	FBgn0011604	Iswi	94	72.755	Drosophila_melanogaster
ENSODEG00000012163	SMARCA1	79	92.857	ENSETEG00000017426	SMARCA1	86	92.857	Echinops_telfairi
ENSODEG00000012163	SMARCA1	90	81.356	ENSEBUG00000001239	smarca5	95	80.678	Eptatretus_burgeri
ENSODEG00000012163	SMARCA1	95	92.247	ENSEASG00005008218	SMARCA1	99	92.346	Equus_asinus_asinus
ENSODEG00000012163	SMARCA1	99	94.476	ENSECAG00000012106	SMARCA1	96	95.243	Equus_caballus
ENSODEG00000012163	SMARCA1	77	95.364	ENSEEUG00000014927	SMARCA1	84	95.364	Erinaceus_europaeus
ENSODEG00000012163	SMARCA1	95	84.048	ENSELUG00000010515	smarca1	97	83.741	Esox_lucius
ENSODEG00000012163	SMARCA1	99	96.750	ENSFCAG00000018496	SMARCA1	98	96.750	Felis_catus
ENSODEG00000012163	SMARCA1	88	91.135	ENSFALG00000000209	SMARCA1	98	91.135	Ficedula_albicollis
ENSODEG00000012163	SMARCA1	95	98.096	ENSFDAG00000009818	SMARCA1	98	98.096	Fukomys_damarensis
ENSODEG00000012163	SMARCA1	97	78.627	ENSFHEG00000007687	smarca5	91	83.852	Fundulus_heteroclitus
ENSODEG00000012163	SMARCA1	95	88.645	ENSGALG00000008431	SMARCA1	99	88.258	Gallus_gallus
ENSODEG00000012163	SMARCA1	91	82.827	ENSGAFG00000017731	smarca5	97	79.704	Gambusia_affinis
ENSODEG00000012163	SMARCA1	91	91.458	ENSGAGG00000023575	SMARCA1	98	91.458	Gopherus_agassizii
ENSODEG00000012163	SMARCA1	71	96.000	ENSGGOG00000012841	-	97	96.000	Gorilla_gorilla
ENSODEG00000012163	SMARCA1	100	97.154	ENSHGLG00000003080	SMARCA1	100	97.154	Heterocephalus_glaber_female
ENSODEG00000012163	SMARCA1	93	97.663	ENSHGLG00100001102	SMARCA1	98	97.663	Heterocephalus_glaber_male
ENSODEG00000012163	SMARCA1	90	83.281	ENSHCOG00000005458	smarca5	97	79.415	Hippocampus_comes
ENSODEG00000012163	SMARCA1	95	84.111	ENSIPUG00000016905	Smarca1	98	86.008	Ictalurus_punctatus
ENSODEG00000012163	SMARCA1	95	79.701	ENSIPUG00000005229	SMARCA5	95	82.238	Ictalurus_punctatus
ENSODEG00000012163	SMARCA1	100	96.205	ENSSTOG00000014524	SMARCA1	100	96.205	Ictidomys_tridecemlineatus
ENSODEG00000012163	SMARCA1	98	94.288	ENSJJAG00000002593	Smarca1	98	94.288	Jaculus_jaculus
ENSODEG00000012163	SMARCA1	90	83.070	ENSKMAG00000003777	smarca5	96	80.417	Kryptolebias_marmoratus
ENSODEG00000012163	SMARCA1	89	82.185	ENSLBEG00000013295	SMARCA1	100	83.313	Labrus_bergylta
ENSODEG00000012163	SMARCA1	91	82.139	ENSLBEG00000018112	smarca5	97	79.882	Labrus_bergylta
ENSODEG00000012163	SMARCA1	95	88.400	ENSLACG00000016697	SMARCA1	97	88.400	Latimeria_chalumnae
ENSODEG00000012163	SMARCA1	92	88.648	ENSLOCG00000014591	smarca1	95	88.516	Lepisosteus_oculatus
ENSODEG00000012163	SMARCA1	95	94.118	ENSLAFG00000000896	SMARCA1	100	94.118	Loxodonta_africana
ENSODEG00000012163	SMARCA1	99	96.466	ENSMFAG00000002117	SMARCA1	100	95.446	Macaca_fascicularis
ENSODEG00000012163	SMARCA1	99	96.466	ENSMMUG00000008818	SMARCA1	100	95.446	Macaca_mulatta
ENSODEG00000012163	SMARCA1	99	96.466	ENSMNEG00000041768	SMARCA1	100	95.446	Macaca_nemestrina
ENSODEG00000012163	SMARCA1	99	96.562	ENSMLEG00000043198	SMARCA1	98	96.562	Mandrillus_leucophaeus
ENSODEG00000012163	SMARCA1	91	83.037	ENSMAMG00000014294	smarca5	96	80.396	Mastacembelus_armatus
ENSODEG00000012163	SMARCA1	91	83.037	ENSMZEG00005009369	smarca5	97	80.217	Maylandia_zebra
ENSODEG00000012163	SMARCA1	93	90.872	ENSMGAG00000007042	SMARCA1	98	90.606	Meleagris_gallopavo
ENSODEG00000012163	SMARCA1	100	94.972	ENSMAUG00000008133	Smarca1	98	95.455	Mesocricetus_auratus
ENSODEG00000012163	SMARCA1	99	96.367	ENSMICG00000015768	SMARCA1	98	96.367	Microcebus_murinus
ENSODEG00000012163	SMARCA1	100	94.782	ENSMOCG00000009464	Smarca1	98	95.261	Microtus_ochrogaster
ENSODEG00000012163	SMARCA1	91	80.729	ENSMMOG00000005547	smarca5	97	80.470	Mola_mola
ENSODEG00000012163	SMARCA1	97	88.856	ENSMODG00000013187	-	97	88.856	Monodelphis_domestica
ENSODEG00000012163	SMARCA1	92	81.781	ENSMALG00000002081	smarca5	97	80.991	Monopterus_albus
ENSODEG00000012163	SMARCA1	100	93.478	MGP_CAROLIEiJ_G0033034	Smarca1	98	93.834	Mus_caroli
ENSODEG00000012163	SMARCA1	100	93.478	ENSMUSG00000031099	Smarca1	98	93.834	Mus_musculus
ENSODEG00000012163	SMARCA1	100	93.478	MGP_PahariEiJ_G0031579	Smarca1	98	93.738	Mus_pahari
ENSODEG00000012163	SMARCA1	100	93.573	MGP_SPRETEiJ_G0034192	Smarca1	98	93.931	Mus_spretus
ENSODEG00000012163	SMARCA1	99	96.275	ENSMPUG00000017423	SMARCA1	92	96.275	Mustela_putorius_furo
ENSODEG00000012163	SMARCA1	98	93.100	ENSMLUG00000029614	SMARCA1	96	92.704	Myotis_lucifugus
ENSODEG00000012163	SMARCA1	98	95.564	ENSNGAG00000006492	Smarca1	98	95.938	Nannospalax_galili
ENSODEG00000012163	SMARCA1	91	83.141	ENSNBRG00000004463	smarca5	97	82.515	Neolamprologus_brichardi
ENSODEG00000012163	SMARCA1	99	95.798	ENSNLEG00000015179	SMARCA1	99	94.895	Nomascus_leucogenys
ENSODEG00000012163	SMARCA1	90	82.038	ENSMEUG00000008819	SMARCA1	100	82.038	Notamacropus_eugenii
ENSODEG00000012163	SMARCA1	91	83.141	ENSONIG00000009993	smarca5	97	80.315	Oreochromis_niloticus
ENSODEG00000012163	SMARCA1	91	92.092	ENSOANG00000002862	SMARCA1	98	92.092	Ornithorhynchus_anatinus
ENSODEG00000012163	SMARCA1	98	93.586	ENSOCUG00000001047	SMARCA1	96	94.645	Oryctolagus_cuniculus
ENSODEG00000012163	SMARCA1	90	82.965	ENSORLG00000021998	smarca5	96	80.198	Oryzias_latipes
ENSODEG00000012163	SMARCA1	93	80.957	ENSORLG00020017679	smarca5	96	80.297	Oryzias_latipes_hni
ENSODEG00000012163	SMARCA1	90	82.965	ENSORLG00015017210	smarca5	97	79.686	Oryzias_latipes_hsok
ENSODEG00000012163	SMARCA1	90	82.965	ENSOMEG00000000086	smarca5	97	79.568	Oryzias_melastigma
ENSODEG00000012163	SMARCA1	100	96.395	ENSOGAG00000004399	SMARCA1	100	96.395	Otolemur_garnettii
ENSODEG00000012163	SMARCA1	94	95.455	ENSOARG00000014638	SMARCA1	98	95.769	Ovis_aries
ENSODEG00000012163	SMARCA1	99	96.466	ENSPPAG00000034647	SMARCA1	98	96.466	Pan_paniscus
ENSODEG00000012163	SMARCA1	99	96.750	ENSPPRG00000008929	SMARCA1	98	96.750	Panthera_pardus
ENSODEG00000012163	SMARCA1	94	95.176	ENSPTIG00000000915	SMARCA1	96	95.176	Panthera_tigris_altaica
ENSODEG00000012163	SMARCA1	99	96.466	ENSPTRG00000049876	SMARCA1	100	95.446	Pan_troglodytes
ENSODEG00000012163	SMARCA1	99	96.466	ENSPANG00000003871	SMARCA1	98	96.466	Papio_anubis
ENSODEG00000012163	SMARCA1	93	85.015	ENSPKIG00000013411	smarca1	98	85.015	Paramormyrops_kingsleyae
ENSODEG00000012163	SMARCA1	94	91.102	ENSPSIG00000010101	SMARCA1	98	91.146	Pelodiscus_sinensis
ENSODEG00000012163	SMARCA1	100	95.446	ENSPEMG00000017503	Smarca1	98	95.938	Peromyscus_maniculatus_bairdii
ENSODEG00000012163	SMARCA1	97	89.279	ENSPCIG00000015460	SMARCA1	97	90.836	Phascolarctos_cinereus
ENSODEG00000012163	SMARCA1	90	83.070	ENSPFOG00000007649	smarca5	96	80.219	Poecilia_formosa
ENSODEG00000012163	SMARCA1	90	83.070	ENSPLAG00000003363	smarca5	96	80.219	Poecilia_latipinna
ENSODEG00000012163	SMARCA1	90	82.965	ENSPMEG00000019849	smarca5	96	80.119	Poecilia_mexicana
ENSODEG00000012163	SMARCA1	90	82.965	ENSPREG00000023250	smarca5	96	80.119	Poecilia_reticulata
ENSODEG00000012163	SMARCA1	97	92.502	ENSPPYG00000020703	SMARCA1	96	92.697	Pongo_abelii
ENSODEG00000012163	SMARCA1	79	90.909	ENSPCOG00000020722	SMARCA1	94	89.899	Propithecus_coquereli
ENSODEG00000012163	SMARCA1	92	96.429	ENSPVAG00000003805	SMARCA1	92	96.429	Pteropus_vampyrus
ENSODEG00000012163	SMARCA1	56	83.562	ENSPNYG00000012299	smarca5	91	82.038	Pundamilia_nyererei
ENSODEG00000012163	SMARCA1	99	93.977	ENSRNOG00000003762	Smarca1	96	94.250	Rattus_norvegicus
ENSODEG00000012163	SMARCA1	99	96.371	ENSRROG00000034167	SMARCA1	98	96.371	Rhinopithecus_roxellana
ENSODEG00000012163	SMARCA1	95	95.916	ENSSBOG00000020641	SMARCA1	98	96.285	Saimiri_boliviensis_boliviensis
ENSODEG00000012163	SMARCA1	91	85.373	ENSSHAG00000013518	SMARCA1	97	85.373	Sarcophilus_harrisii
ENSODEG00000012163	SMARCA1	95	85.089	ENSSFOG00015009043	smarca1	98	84.863	Scleropages_formosus
ENSODEG00000012163	SMARCA1	94	80.648	ENSSFOG00015016794	smarca5	98	83.003	Scleropages_formosus
ENSODEG00000012163	SMARCA1	91	82.188	ENSSMAG00000004801	smarca5	97	79.510	Scophthalmus_maximus
ENSODEG00000012163	SMARCA1	91	82.723	ENSSDUG00000020690	smarca5	96	80.616	Seriola_dumerili
ENSODEG00000012163	SMARCA1	91	82.723	ENSSLDG00000025190	smarca5	96	80.616	Seriola_lalandi_dorsalis
ENSODEG00000012163	SMARCA1	87	89.674	ENSSARG00000000842	SMARCA1	92	89.674	Sorex_araneus
ENSODEG00000012163	SMARCA1	97	88.184	ENSSPUG00000000590	SMARCA1	98	88.184	Sphenodon_punctatus
ENSODEG00000012163	SMARCA1	91	82.932	ENSSPAG00000002894	smarca5	94	83.703	Stegastes_partitus
ENSODEG00000012163	SMARCA1	98	94.277	ENSSSCG00000012649	SMARCA1	98	94.956	Sus_scrofa
ENSODEG00000012163	SMARCA1	91	91.405	ENSTGUG00000003899	-	97	91.125	Taeniopygia_guttata
ENSODEG00000012163	SMARCA1	91	82.932	ENSTRUG00000014094	smarca5	97	79.804	Takifugu_rubripes
ENSODEG00000012163	SMARCA1	90	82.192	ENSTNIG00000017717	smarca5	94	79.187	Tetraodon_nigroviridis
ENSODEG00000012163	SMARCA1	95	90.462	ENSTBEG00000014973	SMARCA1	100	90.462	Tupaia_belangeri
ENSODEG00000012163	SMARCA1	94	94.040	ENSTTRG00000006168	SMARCA1	100	94.040	Tursiops_truncatus
ENSODEG00000012163	SMARCA1	99	94.651	ENSUAMG00000020201	SMARCA1	96	95.131	Ursus_americanus
ENSODEG00000012163	SMARCA1	94	92.129	ENSUMAG00000004073	SMARCA1	97	97.080	Ursus_maritimus
ENSODEG00000012163	SMARCA1	79	98.089	ENSVPAG00000010492	-	86	98.089	Vicugna_pacos
ENSODEG00000012163	SMARCA1	94	95.753	ENSVVUG00000008878	SMARCA1	100	95.979	Vulpes_vulpes
ENSODEG00000012163	SMARCA1	92	88.648	ENSXETG00000001526	smarca1	98	88.505	Xenopus_tropicalis
ENSODEG00000012163	SMARCA1	91	82.723	ENSXCOG00000011170	smarca5	96	82.004	Xiphophorus_couchianus
ENSODEG00000012163	SMARCA1	91	82.723	ENSXMAG00000009678	smarca5	98	82.796	Xiphophorus_maculatus