EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSODEG00000012237 (Gene tree)
Gene ID: 101585298
Gene Symbol: SMG5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Plus strand
Length: 49357 bases
Position: chrJH651547.1:1306023-1355379
Accession: 101585298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000016619	EST1	PF10374.9	7.3e-24	1	1
ENSODEP00000016619	EST1_DNA_bind	PF10373.9	1.3e-39	1	2
ENSODEP00000016619	EST1_DNA_bind	PF10373.9	1.3e-39	2	2
ENSODEP00000016619	PIN_4	PF13638.6	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000016831	SMG5-201	3045	XM_004629735	ENSODEP00000016619	1014 (aa)	XP_004629792	-

Gene Model

Click here to download ENSODEG00000012237's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000012237's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000012237	SMG5	100	95.768	ENSG00000198952	SMG5	100	95.768	Homo_sapiens
ENSODEG00000012237	SMG5	99	67.713	ENSAPOG00000019690	smg5	99	66.309	Acanthochromis_polyacanthus
ENSODEG00000012237	SMG5	98	91.944	ENSAMEG00000014458	SMG5	100	91.944	Ailuropoda_melanoleuca
ENSODEG00000012237	SMG5	99	65.355	ENSACIG00000001353	smg5	99	66.282	Amphilophus_citrinellus
ENSODEG00000012237	SMG5	98	65.350	ENSAOCG00000019483	smg5	99	61.077	Amphiprion_ocellaris
ENSODEG00000012237	SMG5	98	66.534	ENSAPEG00000022949	smg5	98	66.368	Amphiprion_percula
ENSODEG00000012237	SMG5	99	65.772	ENSATEG00000005348	smg5	99	67.119	Anabas_testudineus
ENSODEG00000012237	SMG5	98	78.711	ENSAPLG00000010263	SMG5	100	78.516	Anas_platyrhynchos
ENSODEG00000012237	SMG5	100	95.177	ENSANAG00000032899	SMG5	100	95.177	Aotus_nancymaae
ENSODEG00000012237	SMG5	99	65.833	ENSACLG00000009311	smg5	99	65.222	Astatotilapia_calliptera
ENSODEG00000012237	SMG5	99	43.575	ENSBTAG00000021747	-	99	43.605	Bos_taurus
ENSODEG00000012237	SMG5	100	94.587	ENSBTAG00000009435	SMG5	100	94.587	Bos_taurus
ENSODEG00000012237	SMG5	100	95.177	ENSCJAG00000005684	SMG5	100	95.177	Callithrix_jacchus
ENSODEG00000012237	SMG5	100	93.504	ENSCAFG00000016839	SMG5	100	92.815	Canis_familiaris
ENSODEG00000012237	SMG5	100	93.504	ENSCAFG00020006061	SMG5	100	92.815	Canis_lupus_dingo
ENSODEG00000012237	SMG5	99	44.282	ENSCHIG00000006323	-	99	44.216	Capra_hircus
ENSODEG00000012237	SMG5	100	94.390	ENSCHIG00000007709	SMG5	100	94.390	Capra_hircus
ENSODEG00000012237	SMG5	100	95.084	ENSTSYG00000004099	SMG5	100	94.100	Carlito_syrichta
ENSODEG00000012237	SMG5	97	74.239	ENSCAPG00000003631	SMG5	100	75.312	Cavia_aperea
ENSODEG00000012237	SMG5	100	95.678	ENSCPOG00000015696	SMG5	100	95.678	Cavia_porcellus
ENSODEG00000012237	SMG5	100	95.276	ENSCCAG00000027409	SMG5	100	95.276	Cebus_capucinus
ENSODEG00000012237	SMG5	100	95.768	ENSCATG00000030539	SMG5	100	95.768	Cercocebus_atys
ENSODEG00000012237	SMG5	100	97.151	ENSCLAG00000003983	SMG5	100	97.151	Chinchilla_lanigera
ENSODEG00000012237	SMG5	100	95.669	ENSCSAG00000002120	SMG5	100	95.669	Chlorocebus_sabaeus
ENSODEG00000012237	SMG5	54	91.241	ENSCHOG00000008741	-	57	91.241	Choloepus_hoffmanni
ENSODEG00000012237	SMG5	93	77.868	ENSCPBG00000025848	SMG5	100	78.071	Chrysemys_picta_bellii
ENSODEG00000012237	SMG5	93	35.010	ENSCING00000008706	-	99	34.504	Ciona_intestinalis
ENSODEG00000012237	SMG5	100	91.929	ENSCANG00000029208	SMG5	100	91.929	Colobus_angolensis_palliatus
ENSODEG00000012237	SMG5	100	91.650	ENSCGRG00001006336	Smg5	100	91.650	Cricetulus_griseus_chok1gshd
ENSODEG00000012237	SMG5	98	91.650	ENSCGRG00000005111	Smg5	100	91.641	Cricetulus_griseus_crigri
ENSODEG00000012237	SMG5	99	65.527	ENSCSEG00000014220	smg5	99	64.941	Cynoglossus_semilaevis
ENSODEG00000012237	SMG5	99	61.052	ENSCVAG00000000529	smg5	99	61.187	Cyprinodon_variegatus
ENSODEG00000012237	SMG5	100	90.551	ENSDNOG00000000051	SMG5	100	90.551	Dasypus_novemcinctus
ENSODEG00000012237	SMG5	92	36.143	ENSDNOG00000039862	-	100	35.609	Dasypus_novemcinctus
ENSODEG00000012237	SMG5	100	93.811	ENSDORG00000010382	Smg5	100	93.713	Dipodomys_ordii
ENSODEG00000012237	SMG5	71	31.937	FBgn0019890	Smg5	65	31.937	Drosophila_melanogaster
ENSODEG00000012237	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSODEG00000012237	SMG5	90	47.660	ENSEBUG00000003739	smg5	98	47.065	Eptatretus_burgeri
ENSODEG00000012237	SMG5	100	94.882	ENSEASG00005019122	SMG5	100	94.882	Equus_asinus_asinus
ENSODEG00000012237	SMG5	100	94.882	ENSECAG00000001389	SMG5	100	94.882	Equus_caballus
ENSODEG00000012237	SMG5	72	97.406	ENSEEUG00000012690	SMG5	73	97.406	Erinaceus_europaeus
ENSODEG00000012237	SMG5	99	66.087	ENSELUG00000012585	smg5	99	65.990	Esox_lucius
ENSODEG00000012237	SMG5	100	93.412	ENSFCAG00000011783	SMG5	100	92.724	Felis_catus
ENSODEG00000012237	SMG5	58	80.936	ENSFALG00000001166	-	99	80.936	Ficedula_albicollis
ENSODEG00000012237	SMG5	98	93.857	ENSFDAG00000017388	SMG5	100	93.857	Fukomys_damarensis
ENSODEG00000012237	SMG5	97	61.616	ENSFHEG00000013939	smg5	100	62.159	Fundulus_heteroclitus
ENSODEG00000012237	SMG5	99	61.402	ENSGMOG00000007310	smg5	99	60.771	Gadus_morhua
ENSODEG00000012237	SMG5	99	77.220	ENSGALG00000029918	-	100	76.930	Gallus_gallus
ENSODEG00000012237	SMG5	86	75.847	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSODEG00000012237	SMG5	100	79.278	ENSGAGG00000016131	SMG5	100	78.992	Gopherus_agassizii
ENSODEG00000012237	SMG5	100	95.571	ENSGGOG00000010932	SMG5	100	95.571	Gorilla_gorilla
ENSODEG00000012237	SMG5	99	65.679	ENSHBUG00000008654	smg5	99	64.762	Haplochromis_burtoni
ENSODEG00000012237	SMG5	100	93.713	ENSHGLG00000019152	SMG5	100	93.713	Heterocephalus_glaber_female
ENSODEG00000012237	SMG5	90	93.866	ENSHGLG00100015948	SMG5	99	93.976	Heterocephalus_glaber_male
ENSODEG00000012237	SMG5	87	72.662	ENSHCOG00000010229	smg5	92	73.350	Hippocampus_comes
ENSODEG00000012237	SMG5	99	63.330	ENSIPUG00000006624	Smg5	99	63.230	Ictalurus_punctatus
ENSODEG00000012237	SMG5	100	96.067	ENSSTOG00000001780	SMG5	100	96.067	Ictidomys_tridecemlineatus
ENSODEG00000012237	SMG5	100	92.051	ENSJJAG00000022763	Smg5	100	92.051	Jaculus_jaculus
ENSODEG00000012237	SMG5	50	59.707	ENSKMAG00000014586	smg5	99	60.582	Kryptolebias_marmoratus
ENSODEG00000012237	SMG5	99	66.442	ENSLBEG00000002145	smg5	99	66.442	Labrus_bergylta
ENSODEG00000012237	SMG5	100	64.292	ENSLACG00000010521	SMG5	100	65.242	Latimeria_chalumnae
ENSODEG00000012237	SMG5	93	78.923	ENSLOCG00000008380	smg5	99	62.662	Lepisosteus_oculatus
ENSODEG00000012237	SMG5	100	93.701	ENSLAFG00000006241	SMG5	100	93.701	Loxodonta_africana
ENSODEG00000012237	SMG5	100	95.669	ENSMFAG00000045357	SMG5	100	95.669	Macaca_fascicularis
ENSODEG00000012237	SMG5	100	95.669	ENSMMUG00000000090	SMG5	100	95.669	Macaca_mulatta
ENSODEG00000012237	SMG5	100	95.571	ENSMNEG00000044425	SMG5	100	95.571	Macaca_nemestrina
ENSODEG00000012237	SMG5	100	89.412	ENSMLEG00000041192	SMG5	100	89.412	Mandrillus_leucophaeus
ENSODEG00000012237	SMG5	99	61.909	ENSMAMG00000010683	smg5	99	61.627	Mastacembelus_armatus
ENSODEG00000012237	SMG5	99	64.661	ENSMZEG00005015815	smg5	99	63.697	Maylandia_zebra
ENSODEG00000012237	SMG5	63	60.090	ENSMZEG00005016543	smg5	100	58.735	Maylandia_zebra
ENSODEG00000012237	SMG5	55	45.053	ENSMAUG00000000043	-	96	44.602	Mesocricetus_auratus
ENSODEG00000012237	SMG5	100	91.061	ENSMAUG00000010381	Smg5	100	91.257	Mesocricetus_auratus
ENSODEG00000012237	SMG5	100	95.177	ENSMICG00000002257	SMG5	100	95.177	Microcebus_murinus
ENSODEG00000012237	SMG5	100	90.784	ENSMOCG00000016590	Smg5	100	90.294	Microtus_ochrogaster
ENSODEG00000012237	SMG5	99	59.038	ENSMMOG00000017199	smg5	99	59.569	Mola_mola
ENSODEG00000012237	SMG5	81	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSODEG00000012237	SMG5	76	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSODEG00000012237	SMG5	75	39.895	ENSMODG00000004735	-	86	40.000	Monodelphis_domestica
ENSODEG00000012237	SMG5	97	34.483	ENSMODG00000004511	-	99	34.134	Monodelphis_domestica
ENSODEG00000012237	SMG5	87	89.189	ENSMODG00000016901	SMG5	98	89.189	Monodelphis_domestica
ENSODEG00000012237	SMG5	99	60.536	ENSMALG00000010375	smg5	99	59.682	Monopterus_albus
ENSODEG00000012237	SMG5	100	91.552	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSODEG00000012237	SMG5	100	91.650	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSODEG00000012237	SMG5	100	91.560	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSODEG00000012237	SMG5	100	91.454	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSODEG00000012237	SMG5	93	91.684	ENSMPUG00000004546	SMG5	100	90.947	Mustela_putorius_furo
ENSODEG00000012237	SMG5	100	93.444	ENSMLUG00000008518	SMG5	100	92.564	Myotis_lucifugus
ENSODEG00000012237	SMG5	100	92.724	ENSNGAG00000020706	Smg5	100	92.724	Nannospalax_galili
ENSODEG00000012237	SMG5	98	44.266	ENSNGAG00000012101	-	98	44.266	Nannospalax_galili
ENSODEG00000012237	SMG5	97	63.664	ENSNBRG00000004332	smg5	98	63.855	Neolamprologus_brichardi
ENSODEG00000012237	SMG5	100	95.374	ENSNLEG00000012439	SMG5	100	95.374	Nomascus_leucogenys
ENSODEG00000012237	SMG5	100	87.611	ENSMEUG00000012834	SMG5	100	87.611	Notamacropus_eugenii
ENSODEG00000012237	SMG5	100	93.307	ENSOPRG00000009152	SMG5	100	93.307	Ochotona_princeps
ENSODEG00000012237	SMG5	89	40.899	ENSOCUG00000023338	-	99	39.783	Oryctolagus_cuniculus
ENSODEG00000012237	SMG5	98	94.456	ENSOCUG00000012886	SMG5	100	94.456	Oryctolagus_cuniculus
ENSODEG00000012237	SMG5	99	65.171	ENSORLG00020013127	smg5	99	65.370	Oryzias_latipes_hni
ENSODEG00000012237	SMG5	99	64.981	ENSORLG00015019014	smg5	99	65.567	Oryzias_latipes_hsok
ENSODEG00000012237	SMG5	82	59.486	ENSOMEG00000021330	smg5	92	59.957	Oryzias_melastigma
ENSODEG00000012237	SMG5	100	94.390	ENSOGAG00000004966	SMG5	100	94.390	Otolemur_garnettii
ENSODEG00000012237	SMG5	100	94.488	ENSOARG00000005778	SMG5	100	94.488	Ovis_aries
ENSODEG00000012237	SMG5	99	44.098	ENSOARG00000011963	-	99	44.129	Ovis_aries
ENSODEG00000012237	SMG5	100	95.669	ENSPPAG00000011996	SMG5	100	95.669	Pan_paniscus
ENSODEG00000012237	SMG5	98	93.246	ENSPPRG00000011901	SMG5	100	92.540	Panthera_pardus
ENSODEG00000012237	SMG5	99	85.075	ENSPTIG00000007892	SMG5	98	85.061	Panthera_tigris_altaica
ENSODEG00000012237	SMG5	100	95.669	ENSPTRG00000049282	-	100	95.669	Pan_troglodytes
ENSODEG00000012237	SMG5	100	95.669	ENSPTRG00000023925	SMG5	100	95.669	Pan_troglodytes
ENSODEG00000012237	SMG5	100	95.768	ENSPANG00000011201	SMG5	100	95.768	Papio_anubis
ENSODEG00000012237	SMG5	99	66.211	ENSPKIG00000009402	smg5	99	67.025	Paramormyrops_kingsleyae
ENSODEG00000012237	SMG5	98	79.960	ENSPSIG00000015198	SMG5	100	79.861	Pelodiscus_sinensis
ENSODEG00000012237	SMG5	99	60.737	ENSPMGG00000010465	smg5	99	60.055	Periophthalmus_magnuspinnatus
ENSODEG00000012237	SMG5	56	45.870	ENSPEMG00000010022	-	95	44.578	Peromyscus_maniculatus_bairdii
ENSODEG00000012237	SMG5	100	91.749	ENSPEMG00000001819	Smg5	100	91.749	Peromyscus_maniculatus_bairdii
ENSODEG00000012237	SMG5	99	49.280	ENSPMAG00000000410	smg5	100	49.953	Petromyzon_marinus
ENSODEG00000012237	SMG5	100	88.998	ENSPCIG00000018938	SMG5	100	88.998	Phascolarctos_cinereus
ENSODEG00000012237	SMG5	50	61.152	ENSPFOG00000010191	smg5	99	61.973	Poecilia_formosa
ENSODEG00000012237	SMG5	50	60.297	ENSPLAG00000009332	smg5	99	61.883	Poecilia_latipinna
ENSODEG00000012237	SMG5	99	65.835	ENSPMEG00000014105	smg5	99	65.712	Poecilia_mexicana
ENSODEG00000012237	SMG5	93	76.072	ENSPREG00000017713	smg5	99	61.594	Poecilia_reticulata
ENSODEG00000012237	SMG5	100	95.965	ENSPPYG00000000723	SMG5	100	95.965	Pongo_abelii
ENSODEG00000012237	SMG5	75	96.685	ENSPCAG00000008412	SMG5	81	96.685	Procavia_capensis
ENSODEG00000012237	SMG5	100	95.079	ENSPCOG00000004741	SMG5	100	95.079	Propithecus_coquereli
ENSODEG00000012237	SMG5	100	86.024	ENSPVAG00000016748	SMG5	100	86.024	Pteropus_vampyrus
ENSODEG00000012237	SMG5	93	64.334	ENSPNYG00000013397	smg5	99	59.789	Pundamilia_nyererei
ENSODEG00000012237	SMG5	99	62.808	ENSPNAG00000028363	smg5	99	63.105	Pygocentrus_nattereri
ENSODEG00000012237	SMG5	100	91.749	ENSRNOG00000019590	Smg5	100	91.749	Rattus_norvegicus
ENSODEG00000012237	SMG5	100	95.669	ENSRBIG00000027428	SMG5	100	95.669	Rhinopithecus_bieti
ENSODEG00000012237	SMG5	100	95.571	ENSRROG00000030035	SMG5	100	95.571	Rhinopithecus_roxellana
ENSODEG00000012237	SMG5	100	95.276	ENSSBOG00000033339	SMG5	100	95.276	Saimiri_boliviensis_boliviensis
ENSODEG00000012237	SMG5	64	39.766	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSODEG00000012237	SMG5	98	88.388	ENSSHAG00000014163	SMG5	100	88.388	Sarcophilus_harrisii
ENSODEG00000012237	SMG5	78	42.752	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSODEG00000012237	SMG5	87	40.420	ENSSHAG00000000561	-	98	40.420	Sarcophilus_harrisii
ENSODEG00000012237	SMG5	99	66.667	ENSSFOG00015024175	smg5	99	66.442	Scleropages_formosus
ENSODEG00000012237	SMG5	99	61.456	ENSSMAG00000013059	smg5	99	61.219	Scophthalmus_maximus
ENSODEG00000012237	SMG5	99	60.699	ENSSDUG00000007122	smg5	99	61.087	Seriola_dumerili
ENSODEG00000012237	SMG5	99	61.293	ENSSLDG00000011418	smg5	99	61.302	Seriola_lalandi_dorsalis
ENSODEG00000012237	SMG5	90	80.916	ENSSARG00000012484	SMG5	100	80.807	Sorex_araneus
ENSODEG00000012237	SMG5	93	77.001	ENSSPUG00000002260	SMG5	100	77.406	Sphenodon_punctatus
ENSODEG00000012237	SMG5	92	76.674	ENSSPAG00000014266	smg5	99	65.284	Stegastes_partitus
ENSODEG00000012237	SMG5	99	73.990	ENSSSCG00000039308	-	100	74.187	Sus_scrofa
ENSODEG00000012237	SMG5	53	36.298	ENSSSCG00000037182	-	85	37.524	Sus_scrofa
ENSODEG00000012237	SMG5	100	95.669	ENSSSCG00000006490	-	100	95.669	Sus_scrofa
ENSODEG00000012237	SMG5	99	80.099	ENSTGUG00000003748	-	100	79.863	Taeniopygia_guttata
ENSODEG00000012237	SMG5	94	74.424	ENSTRUG00000012580	smg5	99	65.154	Takifugu_rubripes
ENSODEG00000012237	SMG5	99	65.767	ENSTNIG00000010303	smg5	99	65.150	Tetraodon_nigroviridis
ENSODEG00000012237	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSODEG00000012237	SMG5	100	89.961	ENSTTRG00000001401	SMG5	100	89.961	Tursiops_truncatus
ENSODEG00000012237	SMG5	100	92.913	ENSUAMG00000013721	SMG5	100	92.224	Ursus_americanus
ENSODEG00000012237	SMG5	98	88.442	ENSUMAG00000018041	SMG5	99	85.884	Ursus_maritimus
ENSODEG00000012237	SMG5	98	85.267	ENSVPAG00000009446	SMG5	99	85.267	Vicugna_pacos
ENSODEG00000012237	SMG5	100	93.307	ENSVVUG00000005887	SMG5	100	92.815	Vulpes_vulpes
ENSODEG00000012237	SMG5	77	65.909	ENSXETG00000033791	SMG5	99	65.404	Xenopus_tropicalis
ENSODEG00000012237	SMG5	68	77.778	ENSXCOG00000004379	smg5	95	69.231	Xiphophorus_couchianus
ENSODEG00000012237	SMG5	93	75.395	ENSXMAG00000013499	smg5	99	65.418	Xiphophorus_maculatus