EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSODEG00000012313 (Gene tree)
Gene ID: 101585752
Gene Symbol: -
Alias: -
Full Name: high density lipoprotein binding protein
Gene Type: protein_coding
Species: Octodon_degus
Status: putative
Strand: Minus strand
Length: 70072 bases
Position: chrJH651604.1:10213416-10283487
Accession: 101585752
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	1	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	2	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	3	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	4	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	5	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	6	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	7	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	8	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	9	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	10	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	11	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	12	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	13	14
ENSODEP00000016717	KH_1	PF00013.29	7.9e-189	14	14
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	1	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	2	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	3	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	4	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	5	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	6	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	7	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	8	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	9	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	10	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	11	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	12	13
ENSODEP00000016718	KH_1	PF00013.29	2.2e-176	13	13

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSODET00000016929	-	4440	XM_004637367	ENSODEP00000016717	1264 (aa)	XP_004637424	UPI000333CFD6
ENSODET00000016930	-	3988	XM_004637368	ENSODEP00000016718	1195 (aa)	XP_004637425	UPI000334112F

Gene Model

Click here to download ENSODEG00000012313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSODEG00000012313's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSODEG00000012313	-	100	93.671	ENSODEG00000017391	-	100	93.671

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSODEG00000012313	-	100	96.688	ENSG00000115677	HDLBP	100	100.000	Homo_sapiens
ENSODEG00000012313	-	100	78.885	ENSAPOG00000012609	hdlbpa	99	78.964	Acanthochromis_polyacanthus
ENSODEG00000012313	-	100	95.594	ENSAMEG00000016552	HDLBP	100	95.594	Ailuropoda_melanoleuca
ENSODEG00000012313	-	100	77.216	ENSACIG00000006015	hdlbpa	99	77.216	Amphilophus_citrinellus
ENSODEG00000012313	-	100	78.885	ENSAOCG00000000300	hdlbpa	99	78.964	Amphiprion_ocellaris
ENSODEG00000012313	-	100	78.807	ENSAPEG00000000522	hdlbpa	99	79.883	Amphiprion_percula
ENSODEG00000012313	-	100	78.728	ENSATEG00000009748	hdlbpa	99	78.728	Anabas_testudineus
ENSODEG00000012313	-	100	88.328	ENSACAG00000001556	HDLBP	100	88.328	Anolis_carolinensis
ENSODEG00000012313	-	100	96.451	ENSANAG00000020545	HDLBP	100	96.451	Aotus_nancymaae
ENSODEG00000012313	-	100	78.728	ENSACLG00000025965	hdlbpa	99	78.728	Astatotilapia_calliptera
ENSODEG00000012313	-	93	80.102	ENSAMXG00000004221	hdlbpa	99	80.102	Astyanax_mexicanus
ENSODEG00000012313	-	100	95.426	ENSBTAG00000004315	HDLBP	100	95.426	Bos_taurus
ENSODEG00000012313	-	100	96.163	ENSCJAG00000006152	HDLBP	100	96.142	Callithrix_jacchus
ENSODEG00000012313	-	100	96.057	ENSCAFG00000012913	HDLBP	100	96.177	Canis_familiaris
ENSODEG00000012313	-	100	96.057	ENSCAFG00020025089	HDLBP	100	96.057	Canis_lupus_dingo
ENSODEG00000012313	-	100	95.347	ENSCHIG00000022364	HDLBP	100	95.347	Capra_hircus
ENSODEG00000012313	-	100	96.057	ENSTSYG00000002379	HDLBP	100	96.057	Carlito_syrichta
ENSODEG00000012313	-	100	93.829	ENSCAPG00000008584	HDLBP	100	93.829	Cavia_aperea
ENSODEG00000012313	-	100	98.180	ENSCPOG00000006297	HDLBP	100	98.180	Cavia_porcellus
ENSODEG00000012313	-	92	69.618	ENSCCAG00000037920	-	100	69.618	Cebus_capucinus
ENSODEG00000012313	-	100	96.609	ENSCCAG00000023361	-	100	96.609	Cebus_capucinus
ENSODEG00000012313	-	100	96.688	ENSCATG00000039363	HDLBP	100	96.688	Cercocebus_atys
ENSODEG00000012313	-	100	98.339	ENSCLAG00000002365	HDLBP	100	98.339	Chinchilla_lanigera
ENSODEG00000012313	-	100	95.257	ENSCSAG00000005781	HDLBP	100	95.257	Chlorocebus_sabaeus
ENSODEG00000012313	-	96	66.488	ENSCHOG00000003882	-	100	66.488	Choloepus_hoffmanni
ENSODEG00000012313	-	100	88.170	ENSCPBG00000002442	HDLBP	100	88.170	Chrysemys_picta_bellii
ENSODEG00000012313	-	100	96.451	ENSCANG00000033571	HDLBP	100	96.451	Colobus_angolensis_palliatus
ENSODEG00000012313	-	100	96.530	ENSCGRG00001006086	Hdlbp	100	96.530	Cricetulus_griseus_chok1gshd
ENSODEG00000012313	-	91	47.146	ENSCGRG00001010570	4921511C20Rik	100	47.146	Cricetulus_griseus_chok1gshd
ENSODEG00000012313	-	97	53.452	ENSCGRG00000015720	Gm382	98	53.452	Cricetulus_griseus_crigri
ENSODEG00000012313	-	100	96.530	ENSCGRG00000014444	Hdlbp	100	96.530	Cricetulus_griseus_crigri
ENSODEG00000012313	-	100	78.442	ENSCSEG00000008853	hdlbpa	99	78.442	Cynoglossus_semilaevis
ENSODEG00000012313	-	100	78.285	ENSCVAG00000017892	hdlbpa	99	78.285	Cyprinodon_variegatus
ENSODEG00000012313	-	100	78.292	ENSDARG00000009830	hdlbpa	100	79.263	Danio_rerio
ENSODEG00000012313	-	100	93.873	ENSDNOG00000006753	HDLBP	100	93.873	Dasypus_novemcinctus
ENSODEG00000012313	-	98	92.793	ENSETEG00000005416	-	79	92.793	Echinops_telfairi
ENSODEG00000012313	-	100	96.451	ENSEASG00005008249	HDLBP	100	96.451	Equus_asinus_asinus
ENSODEG00000012313	-	99	55.872	ENSECAG00000028723	-	99	55.872	Equus_caballus
ENSODEG00000012313	-	100	96.451	ENSECAG00000012829	HDLBP	100	96.451	Equus_caballus
ENSODEG00000012313	-	99	56.440	ENSECAG00000030885	-	99	56.440	Equus_caballus
ENSODEG00000012313	-	93	93.980	ENSEEUG00000014648	HDLBP	95	93.980	Erinaceus_europaeus
ENSODEG00000012313	-	100	76.875	ENSELUG00000010700	hdlbpa	99	76.875	Esox_lucius
ENSODEG00000012313	-	100	96.136	ENSFCAG00000010455	HDLBP	100	96.136	Felis_catus
ENSODEG00000012313	-	100	89.826	ENSFALG00000003437	HDLBP	100	89.984	Ficedula_albicollis
ENSODEG00000012313	-	100	97.708	ENSFDAG00000000456	HDLBP	100	97.708	Fukomys_damarensis
ENSODEG00000012313	-	100	78.005	ENSFHEG00000004848	hdlbpa	99	78.005	Fundulus_heteroclitus
ENSODEG00000012313	-	100	76.567	ENSGMOG00000009932	hdlbpa	99	76.567	Gadus_morhua
ENSODEG00000012313	-	100	90.063	ENSGALG00000005823	HDLBP	100	90.142	Gallus_gallus
ENSODEG00000012313	-	100	58.678	ENSGAFG00000016766	hdlbpa	99	55.024	Gambusia_affinis
ENSODEG00000012313	-	100	77.141	ENSGACG00000004648	hdlbpa	99	77.298	Gasterosteus_aculeatus
ENSODEG00000012313	-	100	90.773	ENSGAGG00000004256	HDLBP	100	90.773	Gopherus_agassizii
ENSODEG00000012313	-	100	96.688	ENSGGOG00000004392	HDLBP	100	96.688	Gorilla_gorilla
ENSODEG00000012313	-	100	78.728	ENSHBUG00000001136	hdlbpa	99	78.728	Haplochromis_burtoni
ENSODEG00000012313	-	100	96.996	ENSHGLG00000004910	HDLBP	100	96.996	Heterocephalus_glaber_female
ENSODEG00000012313	-	100	96.996	ENSHGLG00100013326	HDLBP	100	97.191	Heterocephalus_glaber_male
ENSODEG00000012313	-	100	78.108	ENSHCOG00000014837	hdlbpa	99	78.108	Hippocampus_comes
ENSODEG00000012313	-	100	78.505	ENSIPUG00000013088	hdlbp	99	78.505	Ictalurus_punctatus
ENSODEG00000012313	-	84	69.030	ENSIPUG00000013177	-	91	69.030	Ictalurus_punctatus
ENSODEG00000012313	-	100	96.364	ENSSTOG00000013331	HDLBP	100	96.364	Ictidomys_tridecemlineatus
ENSODEG00000012313	-	100	96.924	ENSJJAG00000003596	Hdlbp	100	96.924	Jaculus_jaculus
ENSODEG00000012313	-	92	42.119	ENSJJAG00000013712	-	94	46.525	Jaculus_jaculus
ENSODEG00000012313	-	100	78.459	ENSKMAG00000007571	hdlbpa	99	78.459	Kryptolebias_marmoratus
ENSODEG00000012313	-	100	78.142	ENSLBEG00000027461	hdlbpa	99	78.220	Labrus_bergylta
ENSODEG00000012313	-	100	83.792	ENSLACG00000003592	HDLBP	99	83.792	Latimeria_chalumnae
ENSODEG00000012313	-	100	80.440	ENSLOCG00000006278	hdlbpa	99	80.440	Lepisosteus_oculatus
ENSODEG00000012313	-	100	95.978	ENSLAFG00000014826	HDLBP	100	95.978	Loxodonta_africana
ENSODEG00000012313	-	100	96.688	ENSMFAG00000033641	HDLBP	100	96.688	Macaca_fascicularis
ENSODEG00000012313	-	100	96.497	ENSMMUG00000004730	HDLBP	100	96.372	Macaca_mulatta
ENSODEG00000012313	-	100	96.688	ENSMNEG00000024260	HDLBP	100	96.688	Macaca_nemestrina
ENSODEG00000012313	-	100	96.688	ENSMLEG00000042734	HDLBP	100	96.688	Mandrillus_leucophaeus
ENSODEG00000012313	-	100	78.650	ENSMAMG00000008611	hdlbpa	99	78.650	Mastacembelus_armatus
ENSODEG00000012313	-	100	78.728	ENSMZEG00005009513	hdlbpa	99	78.728	Maylandia_zebra
ENSODEG00000012313	-	100	87.539	ENSMGAG00000003686	HDLBP	100	90.283	Meleagris_gallopavo
ENSODEG00000012313	-	100	96.688	ENSMAUG00000017743	Hdlbp	100	96.688	Mesocricetus_auratus
ENSODEG00000012313	-	100	95.662	ENSMICG00000004569	HDLBP	100	95.662	Microcebus_murinus
ENSODEG00000012313	-	100	96.845	ENSMOCG00000006679	Hdlbp	100	96.845	Microtus_ochrogaster
ENSODEG00000012313	-	98	74.295	ENSMMOG00000006880	hdlbpa	99	74.295	Mola_mola
ENSODEG00000012313	-	100	91.393	ENSMODG00000016033	HDLBP	100	91.393	Monodelphis_domestica
ENSODEG00000012313	-	100	78.448	ENSMALG00000015095	hdlbpa	99	78.448	Monopterus_albus
ENSODEG00000012313	-	100	96.924	MGP_CAROLIEiJ_G0014456	Hdlbp	100	97.753	Mus_caroli
ENSODEG00000012313	-	91	47.269	MGP_CAROLIEiJ_G0033374	4921511C20Rik	100	47.269	Mus_caroli
ENSODEG00000012313	-	95	50.664	MGP_CAROLIEiJ_G0033373	Gm382	96	50.664	Mus_caroli
ENSODEG00000012313	-	91	46.398	ENSMUSG00000049815	4921511C20Rik	100	46.398	Mus_musculus
ENSODEG00000012313	-	100	96.924	ENSMUSG00000034088	Hdlbp	100	97.753	Mus_musculus
ENSODEG00000012313	-	94	50.221	ENSMUSG00000062791	Gm382	95	50.221	Mus_musculus
ENSODEG00000012313	-	91	45.551	MGP_PahariEiJ_G0031914	4921511C20Rik	100	45.551	Mus_pahari
ENSODEG00000012313	-	96	51.325	MGP_PahariEiJ_G0031913	Gm382	96	51.325	Mus_pahari
ENSODEG00000012313	-	100	96.845	MGP_PahariEiJ_G0027692	Hdlbp	100	97.753	Mus_pahari
ENSODEG00000012313	-	100	96.924	MGP_SPRETEiJ_G0015260	Hdlbp	100	97.753	Mus_spretus
ENSODEG00000012313	-	94	49.779	MGP_SPRETEiJ_G0034538	Gm382	95	49.779	Mus_spretus
ENSODEG00000012313	-	91	45.763	MGP_SPRETEiJ_G0034539	4921511C20Rik	100	45.763	Mus_spretus
ENSODEG00000012313	-	100	96.057	ENSMPUG00000000163	HDLBP	100	96.057	Mustela_putorius_furo
ENSODEG00000012313	-	100	96.206	ENSMLUG00000005628	HDLBP	100	96.206	Myotis_lucifugus
ENSODEG00000012313	-	100	96.767	ENSNGAG00000014873	Hdlbp	100	96.767	Nannospalax_galili
ENSODEG00000012313	-	98	79.355	ENSNBRG00000000051	hdlbpa	98	79.355	Neolamprologus_brichardi
ENSODEG00000012313	-	100	96.609	ENSNLEG00000013818	HDLBP	100	96.609	Nomascus_leucogenys
ENSODEG00000012313	-	97	86.315	ENSNLEG00000031018	-	99	91.815	Nomascus_leucogenys
ENSODEG00000012313	-	99	92.150	ENSMEUG00000008427	HDLBP	88	92.150	Notamacropus_eugenii
ENSODEG00000012313	-	100	90.694	ENSOPRG00000011965	-	100	90.694	Ochotona_princeps
ENSODEG00000012313	-	100	78.571	ENSONIG00000019272	hdlbpa	99	78.571	Oreochromis_niloticus
ENSODEG00000012313	-	100	92.180	ENSOANG00000011759	-	100	92.180	Ornithorhynchus_anatinus
ENSODEG00000012313	-	62	93.662	ENSOANG00000021864	-	99	93.525	Ornithorhynchus_anatinus
ENSODEG00000012313	-	100	95.899	ENSOCUG00000012667	HDLBP	100	95.899	Oryctolagus_cuniculus
ENSODEG00000012313	-	100	77.535	ENSORLG00000002226	hdlbpa	99	77.535	Oryzias_latipes
ENSODEG00000012313	-	100	77.847	ENSORLG00020007905	hdlbpa	97	80.656	Oryzias_latipes_hni
ENSODEG00000012313	-	100	77.691	ENSORLG00015004126	hdlbpa	99	77.691	Oryzias_latipes_hsok
ENSODEG00000012313	-	100	75.743	ENSOMEG00000000247	hdlbpa	99	77.867	Oryzias_melastigma
ENSODEG00000012313	-	100	95.662	ENSOGAG00000000738	HDLBP	100	95.662	Otolemur_garnettii
ENSODEG00000012313	-	100	93.725	ENSOARG00000017870	HDLBP	100	93.725	Ovis_aries
ENSODEG00000012313	-	100	96.530	ENSPPAG00000023318	HDLBP	100	96.530	Pan_paniscus
ENSODEG00000012313	-	100	96.136	ENSPPRG00000010215	HDLBP	100	96.136	Panthera_pardus
ENSODEG00000012313	-	85	96.977	ENSPTIG00000009328	HDLBP	97	96.977	Panthera_tigris_altaica
ENSODEG00000012313	-	100	96.688	ENSPTRG00000013121	HDLBP	100	96.688	Pan_troglodytes
ENSODEG00000012313	-	100	96.530	ENSPANG00000011832	HDLBP	100	96.530	Papio_anubis
ENSODEG00000012313	-	100	78.807	ENSPKIG00000002392	hdlbpa	99	78.807	Paramormyrops_kingsleyae
ENSODEG00000012313	-	96	90.000	ENSPSIG00000010068	HDLBP	100	90.000	Pelodiscus_sinensis
ENSODEG00000012313	-	100	78.268	ENSPMGG00000002102	hdlbpa	99	78.268	Periophthalmus_magnuspinnatus
ENSODEG00000012313	-	100	97.003	ENSPEMG00000017704	Hdlbp	100	97.003	Peromyscus_maniculatus_bairdii
ENSODEG00000012313	-	99	92.393	ENSPCIG00000015375	HDLBP	94	92.393	Phascolarctos_cinereus
ENSODEG00000012313	-	100	77.769	ENSPFOG00000000236	hdlbpa	99	77.769	Poecilia_formosa
ENSODEG00000012313	-	95	78.589	ENSPLAG00000006033	hdlbpa	100	78.589	Poecilia_latipinna
ENSODEG00000012313	-	100	77.769	ENSPMEG00000006627	hdlbpa	99	77.769	Poecilia_mexicana
ENSODEG00000012313	-	100	58.312	ENSPREG00000014450	hdlbpa	99	58.312	Poecilia_reticulata
ENSODEG00000012313	-	100	96.530	ENSPPYG00000013351	HDLBP	100	96.530	Pongo_abelii
ENSODEG00000012313	-	100	91.860	ENSPCAG00000011136	HDLBP	79	91.860	Procavia_capensis
ENSODEG00000012313	-	100	95.329	ENSPCOG00000021622	HDLBP	100	95.329	Propithecus_coquereli
ENSODEG00000012313	-	100	94.625	ENSPVAG00000000555	HDLBP	100	94.625	Pteropus_vampyrus
ENSODEG00000012313	-	100	78.807	ENSPNYG00000020753	hdlbpa	99	78.807	Pundamilia_nyererei
ENSODEG00000012313	-	100	73.982	ENSPNAG00000029610	hdlbpa	99	76.397	Pygocentrus_nattereri
ENSODEG00000012313	-	100	96.924	ENSRNOG00000031479	Hdlbp	100	96.924	Rattus_norvegicus
ENSODEG00000012313	-	96	46.776	ENSRNOG00000031294	RGD1563104	97	51.542	Rattus_norvegicus
ENSODEG00000012313	-	91	45.000	ENSRNOG00000028847	AABR07040251.1	100	45.000	Rattus_norvegicus
ENSODEG00000012313	-	92	43.759	ENSRNOG00000042823	RGD1561230	97	43.759	Rattus_norvegicus
ENSODEG00000012313	-	100	96.530	ENSRBIG00000041381	HDLBP	100	96.530	Rhinopithecus_bieti
ENSODEG00000012313	-	100	96.530	ENSRROG00000034263	HDLBP	100	96.530	Rhinopithecus_roxellana
ENSODEG00000012313	-	92	83.955	ENSSBOG00000033067	-	96	83.955	Saimiri_boliviensis_boliviensis
ENSODEG00000012313	-	99	96.212	ENSSBOG00000029714	-	99	97.245	Saimiri_boliviensis_boliviensis
ENSODEG00000012313	-	100	93.060	ENSSHAG00000012422	HDLBP	100	93.060	Sarcophilus_harrisii
ENSODEG00000012313	-	100	79.419	ENSSFOG00015018627	hdlbp	99	79.419	Scleropages_formosus
ENSODEG00000012313	-	100	78.878	ENSSMAG00000002382	hdlbpa	99	78.878	Scophthalmus_maximus
ENSODEG00000012313	-	100	78.605	ENSSDUG00000022258	hdlbpa	99	78.605	Seriola_dumerili
ENSODEG00000012313	-	100	78.527	ENSSLDG00000004437	hdlbpa	99	78.527	Seriola_lalandi_dorsalis
ENSODEG00000012313	-	100	77.233	ENSSARG00000012639	HDLBP	100	77.233	Sorex_araneus
ENSODEG00000012313	-	100	89.038	ENSSPUG00000009182	HDLBP	100	89.038	Sphenodon_punctatus
ENSODEG00000012313	-	100	78.196	ENSSPAG00000009145	hdlbpa	99	78.431	Stegastes_partitus
ENSODEG00000012313	-	100	94.795	ENSSSCG00000016379	HDLBP	100	94.987	Sus_scrofa
ENSODEG00000012313	-	96	89.616	ENSTGUG00000006189	HDLBP	100	89.804	Taeniopygia_guttata
ENSODEG00000012313	-	100	77.165	ENSTRUG00000012148	hdlbpa	99	77.165	Takifugu_rubripes
ENSODEG00000012313	-	99	77.327	ENSTNIG00000004185	hdlbpa	100	77.327	Tetraodon_nigroviridis
ENSODEG00000012313	-	94	75.505	ENSTBEG00000001860	HDLBP	95	75.505	Tupaia_belangeri
ENSODEG00000012313	-	100	96.187	ENSTTRG00000015251	HDLBP	77	96.187	Tursiops_truncatus
ENSODEG00000012313	-	100	95.978	ENSUAMG00000018383	HDLBP	100	95.978	Ursus_americanus
ENSODEG00000012313	-	100	95.899	ENSUMAG00000010539	HDLBP	100	95.899	Ursus_maritimus
ENSODEG00000012313	-	92	60.908	ENSVPAG00000003112	HDLBP	93	60.889	Vicugna_pacos
ENSODEG00000012313	-	96	96.117	ENSVVUG00000022797	HDLBP	99	96.117	Vulpes_vulpes
ENSODEG00000012313	-	100	82.783	ENSXETG00000012164	hdlbp	99	82.783	Xenopus_tropicalis
ENSODEG00000012313	-	100	77.795	ENSXCOG00000005943	hdlbpa	99	77.795	Xiphophorus_couchianus
ENSODEG00000012313	-	100	77.326	ENSXMAG00000003787	hdlbpa	99	77.326	Xiphophorus_maculatus